[package - head-powerpc64-default][math/R-cran-sf] Failed for R-cran-sf-0.9.6_2 in stage

Thu Dec 24 12:18:59 UTC 2020

You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     tota at FreeBSD.org
Last committer: lbartoletti at FreeBSD.org
Ident:          $FreeBSD: head/math/R-cran-sf/Makefile 555622 2020-11-18 05:27:28Z lbartoletti $
Log URL:        http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p558707_s368819/logs/R-cran-sf-0.9.6_2.log
Build URL:      http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p558707_s368819
Log:

=>> Building math/R-cran-sf
build started at Thu Dec 24 12:15:24 UTC 2020
port directory: /usr/ports/math/R-cran-sf
package name: R-cran-sf-0.9.6_2
building for: FreeBSD head-powerpc64-default-job-14 13.0-CURRENT FreeBSD 13.0-CURRENT 1300132 powerpc
maintained by: tota at FreeBSD.org
Makefile ident:      $FreeBSD: head/math/R-cran-sf/Makefile 555622 2020-11-18 05:27:28Z lbartoletti $
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!!! Jail is newer than host. (Jail: 1300132, Host: 1300121) !!!
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=======================<phase: check-sanity   >============================
===>  License GPLv2 MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   R-cran-sf-0.9.6_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.15.10.txz
[head-powerpc64-default-job-14] Installing pkg-1.15.10...
[head-powerpc64-default-job-14] Extracting pkg-1.15.10: .......... done
===>   R-cran-sf-0.9.6_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of R-cran-sf-0.9.6_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 MIT accepted by the user
===> Fetching all distfiles required by R-cran-sf-0.9.6_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 MIT accepted by the user
===> Fetching all distfiles required by R-cran-sf-0.9.6_2 for building
=> SHA256 Checksum OK for sf_0.9-6.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 MIT accepted by the user
===> Fetching all distfiles required by R-cran-sf-0.9.6_2 for building
===>  Extracting for R-cran-sf-0.9.6_2
=> SHA256 Checksum OK for sf_0.9-6.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for R-cran-sf-0.9.6_2
===========================================================================
=======================<phase: build-depends  >============================
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-classInt>=0.4.1 - not found
===>   Installing existing package /packages/All/R-cran-classInt-0.4.3_1.txz
[head-powerpc64-default-job-14] Installing R-cran-classInt-0.4.3_1...
[head-powerpc64-default-job-14] `-- Installing R-4.0.3_1...
[head-powerpc64-default-job-14] |   `-- Installing cairo-1.16.0_1,3...
[head-powerpc64-default-job-14] |   | `-- Installing fontconfig-2.13.92_2,1...
[head-powerpc64-default-job-14] |   |   `-- Installing expat-2.2.10...
[head-powerpc64-default-job-14] |   |   `-- Extracting expat-2.2.10: .......... done
[head-powerpc64-default-job-14] |   |   `-- Installing freetype2-2.10.4...
<snip>
# pw groupmod _tss -m your_account
=====
Message from ghostscript9-agpl-base-9.52_12:

--
This package installs a script named dvipdf that depends on dvips.  If you
want to use this script you need to install print/tex-dvipsk.
=====
Message from dejavu-2.37_1:

--
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-classInt>=0.4.1 - found
===>   Returning to build of R-cran-sf-0.9.6_2
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-DBI>=0.8 - not found
===>   Installing existing package /packages/All/R-cran-DBI-1.1.0_1.txz
[head-powerpc64-default-job-14] Installing R-cran-DBI-1.1.0_1...
[head-powerpc64-default-job-14] Extracting R-cran-DBI-1.1.0_1: .......... done
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-DBI>=0.8 - found
===>   Returning to build of R-cran-sf-0.9.6_2
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-magrittr>0 - not found
===>   Installing existing package /packages/All/R-cran-magrittr-2.0.1.txz
[head-powerpc64-default-job-14] Installing R-cran-magrittr-2.0.1...
[head-powerpc64-default-job-14] Extracting R-cran-magrittr-2.0.1: .......... done
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-magrittr>0 - found
===>   Returning to build of R-cran-sf-0.9.6_2
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-Rcpp>=0.12.18 - not found
===>   Installing existing package /packages/All/R-cran-Rcpp-1.0.5.txz
[head-powerpc64-default-job-14] Installing R-cran-Rcpp-1.0.5...
[head-powerpc64-default-job-14] Extracting R-cran-Rcpp-1.0.5: .......... done
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-Rcpp>=0.12.18 - found
===>   Returning to build of R-cran-sf-0.9.6_2
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-units>=0.6.0 - not found
===>   Installing existing package /packages/All/R-cran-units-0.6.7.txz
[head-powerpc64-default-job-14] Installing R-cran-units-0.6.7...
[head-powerpc64-default-job-14] `-- Installing udunits-2.2.26_2...
[head-powerpc64-default-job-14] `-- Extracting udunits-2.2.26_2: .......... done
[head-powerpc64-default-job-14] Extracting R-cran-units-0.6.7: .......... done
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-units>=0.6.0 - found
===>   Returning to build of R-cran-sf-0.9.6_2
===>   R-cran-sf-0.9.6_2 depends on file: /usr/local/bin/R - found
===>   R-cran-sf-0.9.6_2 depends on executable: gfortran9 - found
===>   R-cran-sf-0.9.6_2 depends on package: pkgconf>=1.3.0_1 - not found
===>   Installing existing package /packages/All/pkgconf-1.7.3,1.txz
[head-powerpc64-default-job-14] Installing pkgconf-1.7.3,1...
[head-powerpc64-default-job-14] Extracting pkgconf-1.7.3,1: .......... done
===>   R-cran-sf-0.9.6_2 depends on package: pkgconf>=1.3.0_1 - found
===>   Returning to build of R-cran-sf-0.9.6_2
===>   R-cran-sf-0.9.6_2 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   R-cran-sf-0.9.6_2 depends on shared library: libgdal.so - not found
===>   Installing existing package /packages/All/gdal-3.1.4_3.txz
[head-powerpc64-default-job-14] Installing gdal-3.1.4_3...
[head-powerpc64-default-job-14] `-- Installing giflib-5.2.1...
[head-powerpc64-default-job-14] `-- Extracting giflib-5.2.1: .......... done
[head-powerpc64-default-job-14] `-- Installing jasper-2.0.23...
[head-powerpc64-default-job-14] |   `-- Installing freeglut-3.0.0_2...
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[head-powerpc64-default-job-14] |   | `-- Extracting libGLU-9.0.1: ...... done
[head-powerpc64-default-job-14] |   | `-- Installing libXi-1.7.10,1...
[head-powerpc64-default-job-14] |   | `-- Extracting libXi-1.7.10,1: .......... done
[head-powerpc64-default-job-14] |   `-- Extracting freeglut-3.0.0_2: .......... done
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[head-powerpc64-default-job-14] Extracting gdal-3.1.4_3: .......... done
=====
Message from freeglut-3.0.0_2:

--
Joystick support is untested and it is unknown if it works.

Do not hesitate to contact x11 at FreeBSD.org if this causes issues.
=====
Message from proj-7.2.0,1:

--
Since proj 7, datum grids are available from a CDN at https://cdn.proj.org and
should either be fetched dynamically at runtime (disabled by default, cf
https://proj.org/usage/network.html) or be fetched locally depending on your
work area needs, using the projsync command. 

DATA option allows you to download all the data, but it requires more than 400mb!
This option is disabled by default.

It is better to use the projsync command.

Use projsync --list-files to list the CDN content.

They can either by installed in the user homedir (under ~/.local/share/proj)

$ projsync --file fr_ign_ntf_r93.tif
Downloading from https://cdn.proj.org into /home/user/.local/share/proj
Total to download: 93581 bytes
Downloading https://cdn.proj.org/fr_ign_ntf_r93.tif... (1 / 1)

or systemwide in the default PROJ_LIB dir (under /usr/local/share/proj, cf
https://proj.org/resource_files.html)

# projsync --system-directory --file fr_ign_ntf_r93.tif
Downloading from https://cdn.proj.org into /usr/local/share/proj
Total to download: 93581 bytes
Downloading https://cdn.proj.org/fr_ign_ntf_r93.tif... (1 / 1)

If not using the default, make sure to set PROJ_LIB environment variable
accordingly.
===>   R-cran-sf-0.9.6_2 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so)
===>   Returning to build of R-cran-sf-0.9.6_2
===>   R-cran-sf-0.9.6_2 depends on shared library: libgeos.so - not found
===>   Installing existing package /packages/All/geos-3.8.1.txz
[head-powerpc64-default-job-14] Installing geos-3.8.1...
[head-powerpc64-default-job-14] Extracting geos-3.8.1: .......... done
===>   R-cran-sf-0.9.6_2 depends on shared library: libgeos.so - found (/usr/local/lib/libgeos.so)
===>   Returning to build of R-cran-sf-0.9.6_2
===>   R-cran-sf-0.9.6_2 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for R-cran-sf-0.9.6_2
===========================================================================
=======================<phase: build          >============================
===========================================================================
=======================<phase: run-depends    >============================
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-classInt>=0.4.1 - found
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-DBI>=0.8 - found
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-magrittr>0 - found
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-Rcpp>=0.12.18 - found
===>   R-cran-sf-0.9.6_2 depends on package: R-cran-units>=0.6.0 - found
===>   R-cran-sf-0.9.6_2 depends on file: /usr/local/bin/R - found
===>   R-cran-sf-0.9.6_2 depends on executable: gfortran9 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for R-cran-sf-0.9.6_2
===>   Generating temporary packing list
* installing *source* package 'sf' ...
** package 'sf' successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: cc
configure: CXX: c++
checking for gdal-config... /usr/local/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.1.4
checking GDAL version >= 2.0.1... yes
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: /usr/local/share/gdal/pcs.csv readable... no
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available fur running:... Segmentation fault (core dumped)
no
configure: error: OGRCoordinateTransformation() does not return a coord.trans: PROJ not available?
ERROR: configuration failed for package 'sf'
* removing '/wrkdirs/usr/ports/math/R-cran-sf/work/stage/usr/local/lib/R/library/sf'
*** Error code 1

Stop.
make: stopped in /usr/ports/math/R-cran-sf