[exp - 121amd64-default-build-as-user][math/py-petsc4py] Failed for py27-petsc4py-3.10.0_2 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Dec 24 07:05:54 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/math/py-petsc4py/Makefile 507372 2019-07-26 20:46:53Z gerald $
Log URL: http://package19.nyi.freebsd.org/data/121amd64-default-build-as-user/558869/logs/py27-petsc4py-3.10.0_2.log
Build URL: http://package19.nyi.freebsd.org/build.html?mastername=121amd64-default-build-as-user&build=558869
Log:
=>> Building math/py-petsc4py
build started at Thu Dec 24 07:05:23 UTC 2020
port directory: /usr/ports/math/py-petsc4py
package name: py27-petsc4py-3.10.0_2
building for: FreeBSD 121amd64-default-build-as-user-job-11 12.1-RELEASE-p12 FreeBSD 12.1-RELEASE-p12 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/math/py-petsc4py/Makefile 507372 2019-07-26 20:46:53Z gerald $
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=======================<phase: check-sanity >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses Python 2.7 which is EOLed upstream.
It is scheduled to be removed on or after 2020-12-31.
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.10.txz
[121amd64-default-build-as-user-job-11] Installing pkg-1.15.10...
[121amd64-default-build-as-user-job-11] Extracting pkg-1.15.10: .......... done
===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py27-petsc4py-3.10.0_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses Python 2.7 which is EOLed upstream.
It is scheduled to be removed on or after 2020-12-31.
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses Python 2.7 which is EOLed upstream.
It is scheduled to be removed on or after 2020-12-31.
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building
=> SHA256 Checksum OK for petsc4py-3.10.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses Python 2.7 which is EOLed upstream.
It is scheduled to be removed on or after 2020-12-31.
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building
===> Extracting for py27-petsc4py-3.10.0_2
<snip>
__pyx_t_1 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMSetDefaultSection(__pyx_v_self->dm, __pyx_v_sec->sec)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(41, 336, __pyx_L1_error)
^
/usr/local/include/petscdm.h:218:21: note: 'DMSetDefaultSection' has been explicitly marked deprecated here
PETSC_STATIC_INLINE PETSC_DEPRECATED_FUNCTION("Use DMSetSection() (since v3.9)") PetscErrorCode DMSetDefaultSection(DM dm, PetscSection s) {return DMSetSection(dm,s);}
^
/usr/local/include/petscconf.h:14:53: note: expanded from macro 'PETSC_DEPRECATED_FUNCTION'
#define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:226600:47: warning: 'DMGetDefaultSection' is deprecated [-Wdeprecated-declarations]
__pyx_t_2 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMGetDefaultSection(__pyx_v_self->dm, (&__pyx_v_sec->sec))); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(41, 340, __pyx_L1_error)
^
/usr/local/include/petscdm.h:217:21: note: 'DMGetDefaultSection' has been explicitly marked deprecated here
PETSC_STATIC_INLINE PETSC_DEPRECATED_FUNCTION("Use DMGetSection() (since v3.9)") PetscErrorCode DMGetDefaultSection(DM dm, PetscSection *s) {return DMGetSection(dm,s);}
^
/usr/local/include/petscconf.h:14:53: note: expanded from macro 'PETSC_DEPRECATED_FUNCTION'
#define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:226720:47: warning: 'DMSetDefaultGlobalSection' is deprecated [-Wdeprecated-declarations]
__pyx_t_1 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMSetDefaultGlobalSection(__pyx_v_self->dm, __pyx_v_sec->sec)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(41, 345, __pyx_L1_error)
^
/usr/local/include/petscdm.h:220:21: note: 'DMSetDefaultGlobalSection' has been explicitly marked deprecated here
PETSC_STATIC_INLINE PETSC_DEPRECATED_FUNCTION("Use DMSetGlobalSection() (since v3.9)") PetscErrorCode DMSetDefaultGlobalSection(DM dm, PetscSection s) {return DMSetGlobalSection(dm,s);}
^
/usr/local/include/petscconf.h:14:53: note: expanded from macro 'PETSC_DEPRECATED_FUNCTION'
#define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:226794:47: warning: 'DMGetDefaultGlobalSection' is deprecated [-Wdeprecated-declarations]
__pyx_t_2 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMGetDefaultGlobalSection(__pyx_v_self->dm, (&__pyx_v_sec->sec))); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(41, 349, __pyx_L1_error)
^
/usr/local/include/petscdm.h:219:21: note: 'DMGetDefaultGlobalSection' has been explicitly marked deprecated here
PETSC_STATIC_INLINE PETSC_DEPRECATED_FUNCTION("Use DMGetGlobalSection() (since v3.9)") PetscErrorCode DMGetDefaultGlobalSection(DM dm, PetscSection *s) {return DMGetGlobalSection(dm,s);}
^
/usr/local/include/petscconf.h:14:53: note: expanded from macro 'PETSC_DEPRECATED_FUNCTION'
#define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:226926:47: warning: 'DMCreateDefaultSF' is deprecated [-Wdeprecated-declarations]
__pyx_t_1 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMCreateDefaultSF(__pyx_v_self->dm, __pyx_v_localsec->sec, __pyx_v_globalsec->sec)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(41, 354, __pyx_L1_error)
^
/usr/local/include/petscdm.h:227:21: note: 'DMCreateDefaultSF' has been explicitly marked deprecated here
PETSC_STATIC_INLINE PETSC_DEPRECATED_FUNCTION("Use DMCreateSectionSF() (since v3.12)") PetscErrorCode DMCreateDefaultSF(DM dm, PetscSection l, PetscSection g) {return DMCreateSectionSF(dm,l,g);}
^
/usr/local/include/petscconf.h:14:53: note: expanded from macro 'PETSC_DEPRECATED_FUNCTION'
#define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:227000:47: warning: 'DMGetDefaultSF' is deprecated [-Wdeprecated-declarations]
__pyx_t_2 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMGetDefaultSF(__pyx_v_self->dm, (&__pyx_v_sf->sf))); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(41, 358, __pyx_L1_error)
^
/usr/local/include/petscdm.h:225:21: note: 'DMGetDefaultSF' has been explicitly marked deprecated here
PETSC_STATIC_INLINE PETSC_DEPRECATED_FUNCTION("Use DMGetSectionSF() (since v3.12)") PetscErrorCode DMGetDefaultSF(DM dm, PetscSF *s) {return DMGetSectionSF(dm,s);}
^
/usr/local/include/petscconf.h:14:53: note: expanded from macro 'PETSC_DEPRECATED_FUNCTION'
#define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:237265:47: warning: implicit declaration of function 'DMDAGetBoundingBox' is invalid in C99 [-Wimplicit-function-declaration]
__pyx_t_1 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMDAGetBoundingBox(__pyx_v_self->__pyx_base.dm, __pyx_v_gmin, __pyx_v_gmax)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(43, 372, __pyx_L1_error)
^
src/petsc4py.PETSc.c:237404:47: warning: implicit declaration of function 'DMDAGetLocalBoundingBox' is invalid in C99 [-Wimplicit-function-declaration]
__pyx_t_1 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMDAGetLocalBoundingBox(__pyx_v_self->__pyx_base.dm, __pyx_v_lmin, __pyx_v_lmax)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(43, 380, __pyx_L1_error)
^
src/petsc4py.PETSc.c:240574:47: warning: 'DMPlexCreateFromCellList' is deprecated [-Wdeprecated-declarations]
__pyx_t_7 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMPlexCreateFromCellList(__pyx_v_ccomm, __pyx_v_cdim, __pyx_v_numCells, __pyx_v_numVertices, __pyx_v_numCorners, __pyx_v_interp, __pyx_v_cellVertices, __pyx_v_spaceDim, __pyx_v_vertexCoords, (&__pyx_v_newdm))); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(44, 38, __pyx_L1_error)
^
/usr/local/include/petscdmplex.h:27:14: note: 'DMPlexCreateFromCellList' has been explicitly marked deprecated here
PETSC_EXTERN PETSC_DEPRECATED_FUNCTION("Use DMPlexCreateFromCellListPetsc() (since version 3.14)") PetscErrorCode DMPlexCreateFromCellList(MPI_Comm, PetscInt, PetscInt, PetscInt, PetscInt, PetscBool, const int[], PetscInt, const double[], DM*);
^
/usr/local/include/petscconf.h:14:53: note: expanded from macro 'PETSC_DEPRECATED_FUNCTION'
#define PETSC_DEPRECATED_FUNCTION(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:251312:233: error: too many arguments to function call, expected 10, have 11
__pyx_t_1 = __pyx_f_8petsc4py_5PETSc_CHKERR(DMPlexCreateSection(__pyx_v_self->__pyx_base.dm, __pyx_v_dim, __pyx_v_ncomp, __pyx_v_icomp, __pyx_v_idof, __pyx_v_nbc, __pyx_v_bcfield, __pyx_v_bccomps, __pyx_v_bcpoints, __pyx_v_cperm, (&__pyx_v_sec->sec))); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(44, 575, __pyx_L1_error)
~~~~~~~~~~~~~~~~~~~ ^~~~~~~~~~~~~~~~~~~
/usr/local/include/petscdmplex.h:314:1: note: 'DMPlexCreateSection' declared here
PETSC_EXTERN PetscErrorCode DMPlexCreateSection(DM, DMLabel [], const PetscInt [], const PetscInt [], PetscInt, const PetscInt [], const IS [], const IS [], IS, PetscSection *);
^
/usr/local/include/petscsys.h:110:24: note: expanded from macro 'PETSC_EXTERN'
# define PETSC_EXTERN extern PETSC_VISIBILITY_PUBLIC
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:275938:42: error: use of undeclared identifier 'NPY_PETSC_SCALAR'
__pyx_t_1 = PyArray_TypeObjectFromType(NPY_PETSC_SCALAR); if (unlikely(!__pyx_t_1)) __PYX_ERR(11, 115, __pyx_L1_error)
^
src/petsc4py.PETSc.c:277965:50: warning: 'PETSC_VIEWER_ASCII_VTK' is deprecated [-Wdeprecated-declarations]
__pyx_t_4 = __Pyx_PyInt_From_PetscViewerFormat(PETSC_VIEWER_ASCII_VTK); if (unlikely(!__pyx_t_4)) __PYX_ERR(27, 31, __pyx_L1_error)
^
/usr/local/include/petscviewer.h:134:3: note: 'PETSC_VIEWER_ASCII_VTK' has been explicitly marked deprecated here
PETSC_VIEWER_ASCII_VTK_ATTR = PETSC_VIEWER_ASCII_VTK_DEPRECATED,
^
/usr/local/include/petscviewer.h:111:74: note: expanded from macro 'PETSC_VIEWER_ASCII_VTK_ATTR'
#define PETSC_VIEWER_ASCII_VTK_ATTR PETSC_VIEWER_ASCII_VTK PETSC_DEPRECATED_ENUM("Legacy VTK deprecated; use PetscViewerVTKOpen() with XML (.vtr .vts .vtu) format (since 3.14)")
^
/usr/local/include/petscconf.h:13:49: note: expanded from macro 'PETSC_DEPRECATED_ENUM'
#define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:277977:50: warning: 'PETSC_VIEWER_ASCII_VTK_CELL' is deprecated [-Wdeprecated-declarations]
__pyx_t_4 = __Pyx_PyInt_From_PetscViewerFormat(PETSC_VIEWER_ASCII_VTK_CELL); if (unlikely(!__pyx_t_4)) __PYX_ERR(27, 32, __pyx_L1_error)
^
/usr/local/include/petscviewer.h:136:3: note: 'PETSC_VIEWER_ASCII_VTK_CELL' has been explicitly marked deprecated here
PETSC_VIEWER_ASCII_VTK_CELL_ATTR = PETSC_VIEWER_ASCII_VTK_CELL_DEPRECATED,
^
/usr/local/include/petscviewer.h:112:74: note: expanded from macro 'PETSC_VIEWER_ASCII_VTK_CELL_ATTR'
#define PETSC_VIEWER_ASCII_VTK_CELL_ATTR PETSC_VIEWER_ASCII_VTK_CELL PETSC_DEPRECATED_ENUM("Legacy VTK deprecated; use PetscViewerVTKOpen() with XML (.vtr .vts .vtu) format (since 3.14)")
^
/usr/local/include/petscconf.h:13:49: note: expanded from macro 'PETSC_DEPRECATED_ENUM'
#define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:277989:50: warning: 'PETSC_VIEWER_ASCII_VTK_COORDS' is deprecated [-Wdeprecated-declarations]
__pyx_t_4 = __Pyx_PyInt_From_PetscViewerFormat(PETSC_VIEWER_ASCII_VTK_COORDS); if (unlikely(!__pyx_t_4)) __PYX_ERR(27, 33, __pyx_L1_error)
^
/usr/local/include/petscviewer.h:138:3: note: 'PETSC_VIEWER_ASCII_VTK_COORDS' has been explicitly marked deprecated here
PETSC_VIEWER_ASCII_VTK_COORDS_ATTR = PETSC_VIEWER_ASCII_VTK_COORDS_DEPRECATED,
^
/usr/local/include/petscviewer.h:113:74: note: expanded from macro 'PETSC_VIEWER_ASCII_VTK_COORDS_ATTR'
#define PETSC_VIEWER_ASCII_VTK_COORDS_ATTR PETSC_VIEWER_ASCII_VTK_COORDS PETSC_DEPRECATED_ENUM("Legacy VTK deprecated; use PetscViewerVTKOpen() with XML (.vtr .vts .vtu) format (since 3.14)")
^
/usr/local/include/petscconf.h:13:49: note: expanded from macro 'PETSC_DEPRECATED_ENUM'
#define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:283321:43: warning: KSPCGNASH macro is deprecated use KSPNASH (since version 3.11) [-W#pragma-messages]
__pyx_t_7 = __pyx_f_8petsc4py_5PETSc_S_(KSPCGNASH); if (unlikely(!__pyx_t_7)) __PYX_ERR(36, 12, __pyx_L1_error)
^
/usr/local/include/petscksp.h:45:24: note: expanded from macro 'KSPCGNASH'
#define KSPCGNASH PETSC_DEPRECATED_MACRO("GCC warning \"KSPCGNASH macro is deprecated use KSPNASH (since version 3.11)\"") "nash"
^
/usr/local/include/petscconf.h:15:37: note: expanded from macro 'PETSC_DEPRECATED_MACRO'
#define PETSC_DEPRECATED_MACRO(why) _Pragma(why)
^
<scratch space>:291:6: note: expanded from here
GCC warning "KSPCGNASH macro is deprecated use KSPNASH (since version 3.11)"
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:283333:43: warning: KSPCGSTCG macro is deprecated use KSPSTCG (since version 3.11) [-W#pragma-messages]
__pyx_t_7 = __pyx_f_8petsc4py_5PETSc_S_(KSPCGSTCG); if (unlikely(!__pyx_t_7)) __PYX_ERR(36, 13, __pyx_L1_error)
^
/usr/local/include/petscksp.h:46:24: note: expanded from macro 'KSPCGSTCG'
#define KSPCGSTCG PETSC_DEPRECATED_MACRO("GCC warning \"KSPCGSTCG macro is deprecated use KSPSTCG (since version 3.11)\"") "stcg"
^
/usr/local/include/petscconf.h:15:37: note: expanded from macro 'PETSC_DEPRECATED_MACRO'
#define PETSC_DEPRECATED_MACRO(why) _Pragma(why)
^
<scratch space>:295:6: note: expanded from here
GCC warning "KSPCGSTCG macro is deprecated use KSPSTCG (since version 3.11)"
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:283345:43: warning: KSPCGGLTR macro is deprecated use KSPSGLTR (since version 3.11) [-W#pragma-messages]
__pyx_t_7 = __pyx_f_8petsc4py_5PETSc_S_(KSPCGGLTR); if (unlikely(!__pyx_t_7)) __PYX_ERR(36, 14, __pyx_L1_error)
^
/usr/local/include/petscksp.h:47:24: note: expanded from macro 'KSPCGGLTR'
#define KSPCGGLTR PETSC_DEPRECATED_MACRO("GCC warning \"KSPCGGLTR macro is deprecated use KSPSGLTR (since version 3.11)\"") "gltr"
^
/usr/local/include/petscconf.h:15:37: note: expanded from macro 'PETSC_DEPRECATED_MACRO'
#define PETSC_DEPRECATED_MACRO(why) _Pragma(why)
^
<scratch space>:299:6: note: expanded from here
GCC warning "KSPCGGLTR macro is deprecated use KSPSGLTR (since version 3.11)"
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:284179:51: warning: 'KSP_DIVERGED_PCSETUP_FAILED' is deprecated [-Wdeprecated-declarations]
__pyx_t_7 = __Pyx_PyInt_From_KSPConvergedReason(KSP_DIVERGED_PCSETUP_FAILED); if (unlikely(!__pyx_t_7)) __PYX_ERR(36, 86, __pyx_L1_error)
^
/usr/local/include/petscksp.h:505:15: note: 'KSP_DIVERGED_PCSETUP_FAILED' has been explicitly marked deprecated here
KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED = -11,
^
/usr/local/include/petscksp.h:467:76: note: expanded from macro 'KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED'
#define KSP_DIVERGED_PCSETUP_FAILED_DEPRECATED KSP_DIVERGED_PCSETUP_FAILED PETSC_DEPRECATED_ENUM("Use KSP_DIVERGED_PC_FAILED (since version 3.11)")
^
/usr/local/include/petscconf.h:13:49: note: expanded from macro 'PETSC_DEPRECATED_ENUM'
#define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
^
In file included from src/PETSc.c:4:
src/petsc4py.PETSc.c:284319:43: error: use of undeclared identifier 'SNESTEST'
__pyx_t_7 = __pyx_f_8petsc4py_5PETSc_S_(SNESTEST); if (unlikely(!__pyx_t_7)) __PYX_ERR(37, 7, __pyx_L1_error)
^
src/petsc4py.PETSc.c:284809:52: warning: 'SNES_CONVERGED_TR_DELTA' is deprecated [-Wdeprecated-declarations]
__pyx_t_7 = __Pyx_PyInt_From_SNESConvergedReason(SNES_CONVERGED_TR_DELTA); if (unlikely(!__pyx_t_7)) __PYX_ERR(37, 49, __pyx_L1_error)
^
/usr/local/include/petscsnes.h:259:15: note: 'SNES_CONVERGED_TR_DELTA' has been explicitly marked deprecated here
SNES_CONVERGED_TR_DELTA_DEPRECATED = -11,
^
/usr/local/include/petscsnes.h:191:68: note: expanded from macro 'SNES_CONVERGED_TR_DELTA_DEPRECATED'
#define SNES_CONVERGED_TR_DELTA_DEPRECATED SNES_CONVERGED_TR_DELTA PETSC_DEPRECATED_ENUM("Use SNES_DIVERGED_TR_DELTA (since version 3.12)")
^
/usr/local/include/petscconf.h:13:49: note: expanded from macro 'PETSC_DEPRECATED_ENUM'
#define PETSC_DEPRECATED_ENUM(why) __attribute((deprecated))
^
31 warnings and 17 errors generated.
error: command '/usr/local/bin/mpicc' failed with exit status 1
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-petsc4py
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