[package - head-amd64-default][science/py-scipy] Failed for py27-scipy-1.5.4 in configure

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Thu Dec 24 01:09:54 UTC 2020


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     python at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident:          $FreeBSD: head/science/py-scipy/Makefile 559036 2020-12-23 23:38:29Z yuri $
Log URL:        http://beefy18.nyi.freebsd.org/data/head-amd64-default/p559040_s368820/logs/py27-scipy-1.5.4.log
Build URL:      http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p559040_s368820
Log:

=>> Building science/py-scipy
build started at Thu Dec 24 01:09:35 UTC 2020
port directory: /usr/ports/science/py-scipy
package name: py27-scipy-1.5.4
building for: FreeBSD head-amd64-default-job-06 13.0-CURRENT FreeBSD 13.0-CURRENT 1300132 amd64
maintained by: python at FreeBSD.org
Makefile ident:      $FreeBSD: head/science/py-scipy/Makefile 559036 2020-12-23 23:38:29Z yuri $
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300121
Jail OSVERSION: 1300132
Job Id: 06




!!! Jail is newer than host. (Jail: 1300132, Host: 1300121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1300132
UNAME_v=FreeBSD 13.0-CURRENT 1300132
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py27
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py27
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for py27-scipy-1.5.4:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
python at FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
F77="gfortran9" FC="gfortran9" FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27  HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
F77="gfortran9" FC="gfortran9" FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27  HOME=/wrkdirs/usr/ports/science/py-scipy/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/l
 ocal  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9  -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PYTHON_INCLUDEDIR=include/python2.7  PYTHON_LIBDIR=lib/python2.7  PYTHON_PLATFORM=freebsd13  PYTHON_SITELIBDIR=lib/python2.7/site-packages  PYTHON_SUFFIX=27  PYTHON_VER=2.7  PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py27-scipy"  EXAMPLESDIR="share/examples/py27-scipy"  DATADIR="share/py27-scipy"  WWWDIR="www/py27-scipy"  ETCDIR="etc/py27-scipy"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/py27-scipy DOCSDIR=/usr/local/share/doc/py27-scipy EXAMPLESDIR=/usr/local/share/examples/py27-scipy  WWWDIR=/usr/local/www/py27-scipy ETCDIR=/usr/local/etc/py27-scipy
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300132
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses Python 2.7 which is EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.

===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py27-scipy-1.5.4 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.16.0.txz
[head-amd64-default-job-06] Installing pkg-1.16.0...
[head-amd64-default-job-06] Extracting pkg-1.16.0: .......... done
===>   py27-scipy-1.5.4 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py27-scipy-1.5.4
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses Python 2.7 which is EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.

===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-scipy-1.5.4 for building
===========================================================================
=======================<phase: checksum       >============================
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses Python 2.7 which is EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.

<snip>
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses Python 2.7 which is EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.

===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-scipy-1.5.4 for building
===>  Extracting for py27-scipy-1.5.4
=> SHA256 Checksum OK for scipy-1.5.4.tar.gz.
=> SHA256 Checksum OK for scipy-ref-1.5.1.pdf.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py27-scipy-1.5.4
===========================================================================
=======================<phase: build-depends  >============================
===>   py27-scipy-1.5.4 depends on package: py27-numpy>=1.16,1<1.20,1 - not found
===>   Installing existing package /packages/All/py27-numpy-1.16.6,1.txz
[head-amd64-default-job-06] Installing py27-numpy-1.16.6,1...
[head-amd64-default-job-06] `-- Installing gcc9-9.3.0_1...
[head-amd64-default-job-06] |   `-- Installing binutils-2.33.1_4,1...
[head-amd64-default-job-06] |   | `-- Installing gettext-runtime-0.21...
[head-amd64-default-job-06] |   |   `-- Installing indexinfo-0.3.1...
[head-amd64-default-job-06] |   |   `-- Extracting indexinfo-0.3.1: .... done
[head-amd64-default-job-06] |   | `-- Extracting gettext-runtime-0.21: .......... done
[head-amd64-default-job-06] |   `-- Extracting binutils-2.33.1_4,1: .......... done
[head-amd64-default-job-06] |   `-- Installing gmp-6.2.1...
[head-amd64-default-job-06] |   `-- Extracting gmp-6.2.1: .......... done
[head-amd64-default-job-06] |   `-- Installing mpc-1.1.0_2...
[head-amd64-default-job-06] |   | `-- Installing mpfr-4.1.0...
[head-amd64-default-job-06] |   | `-- Extracting mpfr-4.1.0: .......... done
[head-amd64-default-job-06] |   `-- Extracting mpc-1.1.0_2: ......... done
[head-amd64-default-job-06] `-- Extracting gcc9-9.3.0_1: .......... done
[head-amd64-default-job-06] `-- Installing openblas-0.3.12,1...
[head-amd64-default-job-06] `-- Extracting openblas-0.3.12,1: .......... done
[head-amd64-default-job-06] `-- Installing py27-setuptools-44.0.0...
[head-amd64-default-job-06] |   `-- Installing python27-2.7.18_1...
[head-amd64-default-job-06] |   | `-- Installing libffi-3.3_1...
[head-amd64-default-job-06] |   | `-- Extracting libffi-3.3_1: .......... done
[head-amd64-default-job-06] |   | `-- Installing readline-8.0.4...
[head-amd64-default-job-06] |   | `-- Extracting readline-8.0.4: .......... done
[head-amd64-default-job-06] |   `-- Extracting python27-2.7.18_1: .......... done
[head-amd64-default-job-06] `-- Extracting py27-setuptools-44.0.0: .......... done
[head-amd64-default-job-06] `-- Installing suitesparse-5.8.1...
[head-amd64-default-job-06] |   `-- Installing metis-5.1.0_8...
[head-amd64-default-job-06] |   `-- Extracting metis-5.1.0_8: .......... done
[head-amd64-default-job-06] |   `-- Installing tbb-2020.3...
[head-amd64-default-job-06] |   `-- Extracting tbb-2020.3: .......... done
[head-amd64-default-job-06] `-- Extracting suitesparse-5.8.1: .......... done
[head-amd64-default-job-06] Extracting py27-numpy-1.16.6,1: .......... done
=====
Message from gcc9-9.3.0_1:

--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc9

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python27-2.7.18_1:

--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter
--
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.
=====
Message from py27-setuptools-44.0.0:

--
Only /usr/local/bin/easy_install-2.7 script has been installed
  since Python 2.7 is not the default Python version.
--
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses Python 2.7 which is EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.
=====
Message from metis-5.1.0_8:

--
===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
=====
Message from py27-numpy-1.16.6,1:

--
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses Python 2.7 which is EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.
===>   py27-scipy-1.5.4 depends on package: py27-numpy>=1.16,1<1.20,1 - found
===>   Returning to build of py27-scipy-1.5.4
===>   py27-scipy-1.5.4 depends on package: py27-pip>0 - not found
===>   Installing existing package /packages/All/py27-pip-20.2.3.txz
[head-amd64-default-job-06] Installing py27-pip-20.2.3...
[head-amd64-default-job-06] Extracting py27-pip-20.2.3: .......... done
=====
Message from py27-pip-20.2.3:

--
pip MUST ONLY be used:

 * With the --user flag, OR
 * To install or manage Python packages in virtual environments

Failure to follow this warning can and will result in an inconsistent
system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and
cause errors.

Avoid using pip as root unless you know what you're doing.
--
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses Python 2.7 which is EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.
===>   py27-scipy-1.5.4 depends on package: py27-pip>0 - found
===>   Returning to build of py27-scipy-1.5.4
===>   py27-scipy-1.5.4 depends on package: py27-pybind11>0 - not found
===>   Installing existing package /packages/All/py27-pybind11-2.6.1.txz
[head-amd64-default-job-06] Installing py27-pybind11-2.6.1...
[head-amd64-default-job-06] Extracting py27-pybind11-2.6.1: .......... done
=====
Message from py27-pybind11-2.6.1:

--
===>   NOTICE:

This port is deprecated; you may wish to reconsider installing it:

Uses Python 2.7 which is EOLed upstream.

It is scheduled to be removed on or after 2020-12-31.
===>   py27-scipy-1.5.4 depends on package: py27-pybind11>0 - found
===>   Returning to build of py27-scipy-1.5.4
===>   py27-scipy-1.5.4 depends on executable: gfortran9 - found
===>   py27-scipy-1.5.4 depends on package: py27-setuptools>0 - found
===>   py27-scipy-1.5.4 depends on file: /usr/local/bin/python2.7 - found
===>   py27-scipy-1.5.4 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py27-scipy-1.5.4 depends on shared library: libblas.so - not found
===>   Installing existing package /packages/All/blas-3.5.0_6.txz
[head-amd64-default-job-06] Installing blas-3.5.0_6...
[head-amd64-default-job-06] Extracting blas-3.5.0_6: ....... done
===>   py27-scipy-1.5.4 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so)
===>   Returning to build of py27-scipy-1.5.4
===>   py27-scipy-1.5.4 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py27-scipy-1.5.4
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 31, in <module>
    raise RuntimeError("Python version >= 3.6 required.")
RuntimeError: Python version >= 3.6 required.
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-scipy


More information about the freebsd-pkg-fallout mailing list