[package - 114amd64-default][biology/igv] Failed for igv-2.8.13 in build

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Sat Dec 19 17:37:40 UTC 2020


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident:          $FreeBSD: head/biology/igv/Makefile 556663 2020-11-30 17:29:48Z yuri $
Log URL:        http://beefy9.nyi.freebsd.org/data/114amd64-default/558421/logs/igv-2.8.13.log
Build URL:      http://beefy9.nyi.freebsd.org/build.html?mastername=114amd64-default&build=558421
Log:

=>> Building biology/igv
build started at Sat Dec 19 17:36:22 UTC 2020
port directory: /usr/ports/biology/igv
package name: igv-2.8.13
building for: FreeBSD 114amd64-default-job-09 11.4-RELEASE-p6 FreeBSD 11.4-RELEASE-p6 amd64
maintained by: yuri at FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/igv/Makefile 556663 2020-11-30 17:29:48Z yuri $
Poudriere version: 3.2.8-8-gaf08dbda
Host OSVERSION: 1300121
Jail OSVERSION: 1104001
Job Id: 09

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1104001
UNAME_v=FreeBSD 11.4-RELEASE-p6
UNAME_r=11.4-RELEASE-p6
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-8-gaf08dbda
MASTERMNT=/usr/local/poudriere/data/.m/114amd64-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/114amd64-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=114amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/114amd64-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work  HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
GRADLE_USER_HOME=/wrkdirs/usr/ports/biology/igv/work JAVA_HOME=/usr/local/openjdk11 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work  HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
JAVASHAREDIR="share/java"  JAVAJARDIR="share/java/classes" OSREL=11.4 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/igv"  EXAMPLESDIR="share/examples/igv"  DATADIR="share/igv"  WWWDIR="www/igv"  ETCDIR="etc/igv"
--End PLIST_SUB--

--SUB_LIST--
JAVA_HOME=/usr/local/openjdk11 JAVASHAREDIR="/usr/local/share/java"  JAVAJARDIR="/usr/local/share/java/classes"  JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="11" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/igv DOCSDIR=/usr/local/share/doc/igv EXAMPLESDIR=/usr/local/share/examples/igv  WWWDIR=/usr/local/www/igv ETCDIR=/usr/local/etc/igv
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git at github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.0 (git at github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git at github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: x86_64-unknown-freebsd11.4 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=amd64
OPSYS=FreeBSD
_OSRELEASE=11.4-RELEASE-p6
OSREL=11.4
OSVERSION=1104001
PYTHONBASE=/usr/local
HAVE_COMPAT_IA32_KERN=YES
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   igv-2.8.13 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.15.10.txz
[114amd64-default-job-09] Installing pkg-1.15.10...
[114amd64-default-job-09] Extracting pkg-1.15.10: .......... done
===>   igv-2.8.13 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of igv-2.8.13
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by igv-2.8.13 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by igv-2.8.13 for building
=> SHA256 Checksum OK for igv-2.8.13/tools.png.
=> SHA256 Checksum OK for igv-2.8.13/igv-2.8.13-deps.tar.gz.
=> SHA256 Checksum OK for igv-2.8.13/igvteam-igv-v2.8.13_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License MIT accepted by the user
===> Fetching all distfiles required by igv-2.8.13 for building
===>  Extracting for igv-2.8.13
=> SHA256 Checksum OK for igv-2.8.13/tools.png.
=> SHA256 Checksum OK for igv-2.8.13/igv-2.8.13-deps.tar.gz.
=> SHA256 Checksum OK for igv-2.8.13/igvteam-igv-v2.8.13_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for igv-2.8.13
===========================================================================
=======================<phase: build-depends  >============================
===>   igv-2.8.13 depends on package: openjfx14>0 - not found
===>   Installing existing package /packages/All/openjfx14-14.0.2.1+1_1.txz
[114amd64-default-job-09] Installing openjfx14-14.0.2.1+1_1...
[114amd64-default-job-09] `-- Installing alsa-lib-1.1.2_2...
[114amd64-default-job-09] `-- Extracting alsa-lib-1.1.2_2: .......... done
[114amd64-default-job-09] `-- Installing atk-2.36.0...
[114amd64-default-job-09] |   `-- Installing gettext-runtime-0.21...
[114amd64-default-job-09] |   | `-- Installing indexinfo-0.3.1...
[114amd64-default-job-09] |   | `-- Extracting indexinfo-0.3.1: .... done
[114amd64-default-job-09] |   `-- Extracting gettext-runtime-0.21: .......... done
[114amd64-default-job-09] |   `-- Installing glib-2.66.3,1...
[114amd64-default-job-09] |   | `-- Installing libffi-3.3_1...
[114amd64-default-job-09] |   | `-- Extracting libffi-3.3_1: .......... done
[114amd64-default-job-09] |   | `-- Installing libiconv-1.16...
[114amd64-default-job-09] |   | `-- Extracting libiconv-1.16: .......... done
[114amd64-default-job-09] |   | `-- Installing libxml2-2.9.10_2...
<snip>

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

	FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
=====
Message from libxkbcommon-1.0.1:

--
If arrow keys don't work under X11 switch to legacy rules e.g.,

For sh/bash/ksh/zsh run and (optionally) add into ~/.profile:
  export XKB_DEFAULT_RULES=xorg

For csh/tcsh run and (optionally) add into ~/.login:
  setenv XKB_DEFAULT_RULES xorg
=====
Message from openjdk11-11.0.9+11.1_2:

--
This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and
procfs(5) mounted on /proc.

If you have not done it yet, please do the following:

	mount -t fdescfs fdesc /dev/fd
	mount -t procfs proc /proc

To make it permanent, you need the following lines in /etc/fstab:

	fdesc	/dev/fd		fdescfs		rw	0	0
	proc	/proc		procfs		rw	0	0
===>   igv-2.8.13 depends on package: openjfx14>0 - found
===>   Returning to build of igv-2.8.13
===>   igv-2.8.13 depends on executable: gradle - not found
===>   Installing existing package /packages/All/gradle-6.7.1.txz
[114amd64-default-job-09] Installing gradle-6.7.1...
[114amd64-default-job-09] `-- Installing openjdk8-8.275.01.1...
[114amd64-default-job-09] |   `-- Installing java-zoneinfo-2020.d...
[114amd64-default-job-09] |   `-- Extracting java-zoneinfo-2020.d: .......... done
[114amd64-default-job-09] |   `-- Installing libinotify-20180201_2...
[114amd64-default-job-09] |   `-- Extracting libinotify-20180201_2: .......... done
[114amd64-default-job-09] `-- Extracting openjdk8-8.275.01.1: .......... done
[114amd64-default-job-09] Extracting gradle-6.7.1: .......... done
=====
Message from libinotify-20180201_2:

--
Libinotify functionality on FreeBSD is missing support for

  - detecting a file being moved into or out of a directory within the
    same filesystem
  - certain modifications to a symbolic link (rather than the
    file it points to.)

in addition to the known limitations on all platforms using kqueue(2)
where various open and close notifications are unimplemented.

This means the following regression tests will fail:

Directory notifications:
   IN_MOVED_FROM
   IN_MOVED_TO

Open/close notifications:
   IN_OPEN
   IN_CLOSE_NOWRITE
   IN_CLOSE_WRITE

Symbolic Link notifications:
   IN_DONT_FOLLOW
   IN_ATTRIB
   IN_MOVE_SELF
   IN_DELETE_SELF

Kernel patches to address the missing directory and symbolic link
notifications are available from:

https://github.com/libinotify-kqueue/libinotify-kqueue/tree/master/patches

You might want to consider increasing the kern.maxfiles tunable if you plan
to use this library for applications that need to monitor activity of a lot
of files.
=====
Message from openjdk8-8.275.01.1:

--
This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and
procfs(5) mounted on /proc.

If you have not done it yet, please do the following:

	mount -t fdescfs fdesc /dev/fd
	mount -t procfs proc /proc

To make it permanent, you need the following lines in /etc/fstab:

	fdesc	/dev/fd		fdescfs		rw	0	0
	proc	/proc		procfs		rw	0	0
===>   igv-2.8.13 depends on executable: gradle - found
===>   Returning to build of igv-2.8.13
===>   igv-2.8.13 depends on file: /usr/local/openjdk11/bin/java - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   igv-2.8.13 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for igv-2.8.13
===========================================================================
=======================<phase: build          >============================
===>  Building for igv-2.8.13
cd /wrkdirs/usr/ports/biology/igv/work/igv-2.8.13 && /usr/bin/env GRADLE_USER_HOME=/wrkdirs/usr/ports/biology/igv/work JAVA_HOME=/usr/local/openjdk11 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work  HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444" gradle  --gradle-
 user-home /wrkdirs/usr/ports/biology/igv/work/gradle-igv --project-cache-dir /wrkdirs/usr/ports/biology/igv/work/gradle-igv  --offline --build-cache --stacktrace createDist

Welcome to Gradle 6.7.1!

Here are the highlights of this release:
 - File system watching is ready for production use
 - Declare the version of Java your build requires
 - Java 15 support

For more details see https://docs.gradle.org/6.7.1/release-notes.html

Starting a Gradle Daemon (subsequent builds will be faster)
The message received from the daemon indicates that the daemon has disappeared.
Build request sent: Build{id=b9b679a4-9987-4b8f-87b5-2469be3f1d47, currentDir=/wrkdirs/usr/ports/biology/igv/work/igv-2.8.13}
Attempting to read last messages from the daemon log...
Daemon pid: 86863
  log file: /wrkdirs/usr/ports/biology/igv/work/gradle-igv/daemon/6.7.1/daemon-86863.out.log
----- Last  20 lines from daemon log file - daemon-86863.out.log -----
2020-12-19T17:37:37.703+0000 [ERROR] [org.gradle.launcher.daemon.server.DaemonStateCoordinator] Command execution: started DaemonCommandExecution[command = Build{id=b9b679a4-9987-4b8f-87b5-2469be3f1d47, currentDir=/wrkdirs/usr/ports/biology/igv/work/igv-2.8.13}, connection = DefaultDaemonConnection: socket connection from /127.0.0.1:37338 to /127.0.0.1:37339] after 0.0 minutes of idle
2020-12-19T17:37:37.703+0000 [INFO] [org.gradle.launcher.daemon.server.DaemonRegistryUpdater] Marking the daemon as busy, address: [09599699-ae18-44ee-aad2-aedbb169d933 port:37338, addresses:[localhost/127.0.0.1]]
2020-12-19T17:37:37.704+0000 [DEBUG] [org.gradle.launcher.daemon.registry.PersistentDaemonRegistry] Marking busy by address: [09599699-ae18-44ee-aad2-aedbb169d933 port:37338, addresses:[localhost/127.0.0.1]]
2020-12-19T17:37:37.705+0000 [DEBUG] [org.gradle.cache.internal.DefaultFileLockManager] Waiting to acquire exclusive lock on daemon addresses registry.
2020-12-19T17:37:37.705+0000 [DEBUG] [org.gradle.cache.internal.DefaultFileLockManager] Lock acquired on daemon addresses registry.
2020-12-19T17:37:37.706+0000 [DEBUG] [org.gradle.cache.internal.DefaultFileLockManager] Releasing lock on daemon addresses registry.
2020-12-19T17:37:37.707+0000 [DEBUG] [org.gradle.launcher.daemon.server.DaemonStateCoordinator] resetting idle timer
2020-12-19T17:37:37.707+0000 [DEBUG] [org.gradle.launcher.daemon.server.DaemonStateCoordinator] daemon is running. Sleeping until state changes.
2020-12-19T17:37:37.708+0000 [INFO] [org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy] Daemon is about to start building Build{id=b9b679a4-9987-4b8f-87b5-2469be3f1d47, currentDir=/wrkdirs/usr/ports/biology/igv/work/igv-2.8.13}. Dispatching build started information...
2020-12-19T17:37:37.709+0000 [DEBUG] [org.gradle.launcher.daemon.server.SynchronizedDispatchConnection] thread 29: dispatching org.gradle.launcher.daemon.protocol.BuildStarted at 3e51205b
2020-12-19T17:37:37.712+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment] Configuring env variables: [P_PORTS_FEATURES, PATH, MASTERMNT, CXX, CPP, META_MODE, MASTERNAME, BSD_INSTALL_PROGRAM, SAVED_TERM, LDFLAGS, UNAME_r, NO_LINT, STATUS, SCRIPTPREFIX, UNAME_v, BSD_INSTALL_MAN, POUDRIERE_BUILD_TYPE, MAIL, OSREL, NO_DEPENDS, PWD, GID, SHELL, CPPFLAGS, _OSRELEASE, BSD_INSTALL_LIB, OLDPWD, LIBS, TMPDIR, UID, OSVERSION, LC_ALL, PREFIX, SCRIPTPATH, HAVE_COMPAT_IA32_KERN, MK_DEBUG_FILES, MANPREFIX, BLOCKSIZE, MAKEFLAGS, JAVA_HOME, ARCH, LANG, OPSYS, LOCALBASE, GRADLE_USER_HOME, CFLAGS, MK_KERNEL_SYMBOLS, .MAKE.LEVEL.ENV, BSD_INSTALL_SCRIPT, CC, XDG_DATA_HOME, POUDRIERE_VERSION, BSD_INSTALL_DATA, USER, XDG_CONFIG_HOME, NO_PIE, MAKELEVEL, LIBEXECPREFIX, POUDRIEREPATH, PACKAGE_BUILDING, HOME, CXXFLAGS]
2020-12-19T17:37:37.714+0000 [DEBUG] [org.gradle.launcher.daemon.server.SynchronizedDispatchConnection] thread 27: received class org.gradle.launcher.daemon.protocol.CloseInput
2020-12-19T17:37:37.714+0000 [DEBUG] [org.gradle.launcher.daemon.server.DefaultDaemonConnection] thread 27: Received IO message from client: org.gradle.launcher.daemon.protocol.CloseInput at 55f86f15
2020-12-19T17:37:37.722+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.LogToClient] About to start relaying all logs to the client via the connection.
2020-12-19T17:37:37.723+0000 [INFO] [org.gradle.launcher.daemon.server.exec.LogToClient] The client will now receive all logging from the daemon (pid: 86863). The daemon log file: /wrkdirs/usr/ports/biology/igv/work/gradle-igv/daemon/6.7.1/daemon-86863.out.log
2020-12-19T17:37:37.727+0000 [INFO] [org.gradle.launcher.daemon.server.exec.LogAndCheckHealth] Starting build in new daemon [memory: 536.9 MB]
2020-12-19T17:37:37.729+0000 [INFO] [org.gradle.launcher.daemon.server.exec.ForwardClientInput] Closing daemon's stdin at end of input.
2020-12-19T17:37:37.729+0000 [INFO] [org.gradle.launcher.daemon.server.exec.ForwardClientInput] The daemon will no longer process any standard input.
2020-12-19T17:37:37.735+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.ExecuteBuild] The daemon has started executing the build.
2020-12-19T17:37:37.736+0000 [DEBUG] [org.gradle.launcher.daemon.server.exec.ExecuteBuild] Executing build with daemon context: DefaultDaemonContext[uid=26765103-99dd-4a46-9f89-88f3a231f45f,javaHome=/usr/local/openjdk11,daemonRegistryDir=/wrkdirs/usr/ports/biology/igv/work/gradle-igv/daemon,pid=86863,idleTimeout=10800000,priority=NORMAL,daemonOpts=--add-opens,java.base/java.util=ALL-UNNAMED,--add-opens,java.base/java.lang=ALL-UNNAMED,--add-opens,java.base/java.lang.invoke=ALL-UNNAMED,--add-opens,java.prefs/java.util.prefs=ALL-UNNAMED,-XX:MaxMetaspaceSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xms256m,-Xmx512m,-Dfile.encoding=US-ASCII,-Duser.country=US,-Duser.language=en,-Duser.variant]
----- End of the daemon log -----


FAILURE: Build failed with an exception.

* What went wrong:
Gradle build daemon disappeared unexpectedly (it may have been killed or may have crashed)

* Try:
Run with --info or --debug option to get more log output. Run with --scan to get full insights.

* Exception is:
org.gradle.launcher.daemon.client.DaemonDisappearedException: Gradle build daemon disappeared unexpectedly (it may have been killed or may have crashed)
	at org.gradle.launcher.daemon.client.DaemonClient.handleDaemonDisappearance(DaemonClient.java:249)
	at org.gradle.launcher.daemon.client.DaemonClient.monitorBuild(DaemonClient.java:222)
	at org.gradle.launcher.daemon.client.DaemonClient.executeBuild(DaemonClient.java:184)
	at org.gradle.launcher.daemon.client.DaemonClient.execute(DaemonClient.java:147)
	at org.gradle.launcher.daemon.client.DaemonClient.execute(DaemonClient.java:98)
	at org.gradle.launcher.cli.RunBuildAction.run(RunBuildAction.java:57)
	at org.gradle.internal.Actions$RunnableActionAdapter.execute(Actions.java:212)
	at org.gradle.launcher.cli.DefaultCommandLineActionFactory$ParseAndBuildAction.execute(DefaultCommandLineActionFactory.java:275)
	at org.gradle.launcher.cli.DefaultCommandLineActionFactory$ParseAndBuildAction.execute(DefaultCommandLineActionFactory.java:247)
	at org.gradle.launcher.cli.DebugLoggerWarningAction.execute(DebugLoggerWarningAction.java:82)
	at org.gradle.launcher.cli.DebugLoggerWarningAction.execute(DebugLoggerWarningAction.java:30)
	at org.gradle.launcher.cli.WelcomeMessageAction.execute(WelcomeMessageAction.java:92)
	at org.gradle.launcher.cli.WelcomeMessageAction.execute(WelcomeMessageAction.java:38)
	at org.gradle.launcher.cli.NativeServicesInitializingAction.execute(NativeServicesInitializingAction.java:44)
	at org.gradle.launcher.cli.NativeServicesInitializingAction.execute(NativeServicesInitializingAction.java:26)
	at org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:41)
	at org.gradle.launcher.cli.ExceptionReportingAction.execute(ExceptionReportingAction.java:26)
	at org.gradle.launcher.cli.DefaultCommandLineActionFactory$WithLogging.execute(DefaultCommandLineActionFactory.java:240)
	at org.gradle.launcher.Main.doAction(Main.java:35)
	at org.gradle.launcher.bootstrap.EntryPoint.run(EntryPoint.java:50)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at org.gradle.launcher.bootstrap.ProcessBootstrap.runNoExit(ProcessBootstrap.java:60)
	at org.gradle.launcher.bootstrap.ProcessBootstrap.run(ProcessBootstrap.java:37)
	at org.gradle.launcher.GradleMain.main(GradleMain.java:31)


* Get more help at https://help.gradle.org
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/igv


More information about the freebsd-pkg-fallout mailing list