[package - head-armv7-default][science/erkale] Failed for erkale-g20200426_5 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Sun Dec 13 08:01:17 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: danilo at FreeBSD.org
Ident: $FreeBSD: head/science/erkale/Makefile 553653 2020-10-29 22:30:44Z danilo $
Log URL: http://beefy12.nyi.freebsd.org/data/head-armv7-default/p557402_s368493/logs/erkale-g20200426_5.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p557402_s368493
Log:
=>> Building science/erkale
build started at Sun Dec 13 07:58:57 UTC 2020
port directory: /usr/ports/science/erkale
package name: erkale-g20200426_5
building for: FreeBSD head-armv7-default-job-02 13.0-CURRENT FreeBSD 13.0-CURRENT 1300131 arm
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/erkale/Makefile 553653 2020-10-29 22:30:44Z danilo $
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===> Use 'make config' to modify these settings
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=======================<phase: check-sanity >============================
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> erkale-g20200426_5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.10.txz
[head-armv7-default-job-02] Installing pkg-1.15.10...
[head-armv7-default-job-02] Extracting pkg-1.15.10: .......... done
===> erkale-g20200426_5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of erkale-g20200426_5
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License GPLv2 accepted by the user
<snip>
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> erkale-g20200426_5 depends on package: armadillo>0 - found
===> Returning to build of erkale-g20200426_5
===> erkale-g20200426_5 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.18.5.txz
[head-armv7-default-job-02] Installing cmake-3.18.5...
[head-armv7-default-job-02] `-- Installing curl-7.73.0...
[head-armv7-default-job-02] | `-- Installing ca_root_nss-3.58...
[head-armv7-default-job-02] | `-- Extracting ca_root_nss-3.58: ........ done
[head-armv7-default-job-02] | `-- Installing libnghttp2-1.41.0...
[head-armv7-default-job-02] | `-- Extracting libnghttp2-1.41.0: .......... done
[head-armv7-default-job-02] `-- Extracting curl-7.73.0: .......... done
[head-armv7-default-job-02] `-- Installing expat-2.2.10...
[head-armv7-default-job-02] `-- Extracting expat-2.2.10: .......... done
[head-armv7-default-job-02] `-- Installing jsoncpp-1.9.4...
[head-armv7-default-job-02] `-- Extracting jsoncpp-1.9.4: .......... done
[head-armv7-default-job-02] `-- Installing libarchive-3.4.3,1...
[head-armv7-default-job-02] | `-- Installing liblz4-1.9.3,1...
[head-armv7-default-job-02] | `-- Extracting liblz4-1.9.3,1: .......... done
[head-armv7-default-job-02] | `-- Installing lzo2-2.10_1...
[head-armv7-default-job-02] | `-- Extracting lzo2-2.10_1: .......... done
[head-armv7-default-job-02] `-- Extracting libarchive-3.4.3,1: .......... done
[head-armv7-default-job-02] `-- Installing libuv-1.40.0...
[head-armv7-default-job-02] `-- Extracting libuv-1.40.0: .......... done
[head-armv7-default-job-02] `-- Installing rhash-1.4.0...
[head-armv7-default-job-02] `-- Extracting rhash-1.4.0: .......... done
[head-armv7-default-job-02] Extracting cmake-3.18.5: .......... done
=====
Message from ca_root_nss-3.58:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
===> erkale-g20200426_5 depends on file: /usr/local/bin/cmake - found
===> Returning to build of erkale-g20200426_5
===> erkale-g20200426_5 depends on executable: gfortran9 - found
===> erkale-g20200426_5 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-1.7.3,1.txz
[head-armv7-default-job-02] Installing pkgconf-1.7.3,1...
[head-armv7-default-job-02] Extracting pkgconf-1.7.3,1: .......... done
===> erkale-g20200426_5 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of erkale-g20200426_5
===> erkale-g20200426_5 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===> erkale-g20200426_5 depends on shared library: libderiv.so - not found
===> Installing existing package /packages/All/libint-1.2.1.15.txz
[head-armv7-default-job-02] Installing libint-1.2.1.15...
[head-armv7-default-job-02] Extracting libint-1.2.1.15: .......... done
===> erkale-g20200426_5 depends on shared library: libderiv.so - found (/usr/local/lib/libderiv.so)
===> Returning to build of erkale-g20200426_5
===> erkale-g20200426_5 depends on shared library: libgsl.so - not found
===> Installing existing package /packages/All/gsl-2.6.txz
[head-armv7-default-job-02] Installing gsl-2.6...
[head-armv7-default-job-02] Extracting gsl-2.6: .......... done
===> erkale-g20200426_5 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so)
===> Returning to build of erkale-g20200426_5
===> erkale-g20200426_5 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> erkale-g20200426_5 depends on shared library: libint.so - found (/usr/local/lib/libint.so)
===> erkale-g20200426_5 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so)
===> erkale-g20200426_5 depends on shared library: libxc.so - not found
===> Installing existing package /packages/All/libxc-5.0.0.txz
[head-armv7-default-job-02] Installing libxc-5.0.0...
[head-armv7-default-job-02] Extracting libxc-5.0.0: .......... done
===> erkale-g20200426_5 depends on shared library: libxc.so - found (/usr/local/lib/libxc.so)
===> Returning to build of erkale-g20200426_5
===> erkale-g20200426_5 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=======================<phase: configure >============================
===> Configuring for erkale-g20200426_5
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/erkale/work-parallel/.build
-- The C compiler identification is Clang 11.0.0
-- The CXX compiler identification is Clang 11.0.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /nxb-bin/usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 9.3.0
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/bin/gfortran9 - skipped
-- Checking whether /usr/local/bin/gfortran9 supports Fortran 90
-- Checking whether /usr/local/bin/gfortran9 supports Fortran 90 - yes
Using /usr/local/share/erkale/basis as default basis set repository.
-- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES)
-- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES)
-- Found OpenMP_Fortran: -fopenmp (found version "4.5")
-- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND) (found version "4.5")
-- Found BLAS: -lopenblas
-- A library with LAPACK API found.
LAPACK headers are in
LAPACK library is -lopenblas
-- Found Armadillo: /usr/local/include (found version "10.1.1")
ARMADILLO headers are in /usr/local/include
ARMADILLO library is /usr/local/lib/libarmadillo.so
-- Found PkgConfig: pkgconf (found version "1.7.3")
-- Checking for module 'gsl'
-- Found gsl, version 2.6
-- Found GSL
GSL headers are in /usr/local/include
GSL library is /usr/local/lib/libgsl.so
-- Checking for module 'libxc'
-- Found libxc, version 5.0.0
-- Found LIBXC
libxc headers are in /usr/local/include
libxc linker flags are /usr/local/lib/libxc.so
libint headers are in /usr/include
libint linker flags are -lint -lderiv
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6")
HDF5 headers are in /usr/local/include
HDF5 linker flags are /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so
Can run tests.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_MODULE_LINKER_FLAGS
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/science/erkale/work-parallel/.build
===========================================================================
=======================<phase: build >============================
===> Building for erkale-g20200426_5
/usr/local/bin/cmake -S/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01 -B/wrkdirs/usr/ports/science/erkale/work-parallel/.build --check-build-system CMakeFiles/Makefile.cmake 0
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/nxb-bin/usr/bin/make -f src/CMakeFiles/eriworker_gentransform.dir/build.make src/CMakeFiles/eriworker_gentransform.dir/depend
cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01 /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src /wrkdirs/usr/ports/science/erkale/work-parallel/.build /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/CMakeFiles/eriworker_gentransform.dir/DependInfo.cmake
Scanning dependencies of target eriworker_gentransform
/nxb-bin/usr/bin/make -f src/CMakeFiles/eriworker_gentransform.dir/build.make src/CMakeFiles/eriworker_gentransform.dir/build
[ -3%] Building CXX object src/CMakeFiles/eriworker_gentransform.dir/eriworker_gentransform.cpp.o
cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /nxb-bin/usr/bin/c++ -DARMA_DONT_USE_WRAPPER -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -o CMakeFiles/eriworker_gentransform.dir/eriworker_gentransform.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src/eriworker_gentransform.cpp
[ -3%] Building CXX object src/CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o
cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /nxb-bin/usr/bin/c++ -DARMA_DONT_USE_WRAPPER -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -o CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src/solidharmonics.cpp
[ -3%] Building CXX object src/CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o
cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /nxb-bin/usr/bin/c++ -DARMA_DONT_USE_WRAPPER -I/wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -o CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o -c /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src/mathf.cpp
[ -3%] Linking CXX executable eriworker_gentransform
cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/eriworker_gentransform.dir/link.txt --verbose=1
/nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DERKALE_SYSTEM_LIBRARY=\"/usr/local/share/erkale/basis\" -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -L/usr/local/lib -fstack-protector-strong CMakeFiles/eriworker_gentransform.dir/eriworker_gentransform.cpp.o CMakeFiles/eriworker_gentransform.dir/solidharmonics.cpp.o CMakeFiles/eriworker_gentransform.dir/mathf.cpp.o -o eriworker_gentransform -Wl,-rpath,/usr/local/lib /usr/local/lib/libgsl.so -lopenblas
[ -3%] Built target eriworker_gentransform
/nxb-bin/usr/bin/make -f src/CMakeFiles/liberkale.dir/build.make src/CMakeFiles/liberkale.dir/depend
[ -3%] Generating scf-solvers.cpp
cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /bin/cat /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src/scf-includes.cpp.in >/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-solvers.cpp
cd /wrkdirs/usr/ports/science/erkale/work-parallel/.build/src && /nxb-bin/usr/bin/c++ -x c++ -E NOTFOUND -DRESTRICTED -DHF /wrkdirs/usr/ports/science/erkale/work-parallel/erkale-870e772f09631b3dbdd99a18e4f3d4786d684a01/src/scf-solvers.cpp.in >>/wrkdirs/usr/ports/science/erkale/work-parallel/.build/src/scf-solvers.cpp
c++: error: no such file or directory: 'NOTFOUND'
*** Error code 1
make[3]: *** src/scf-solvers.cpp removed
Stop.
make[3]: stopped in /wrkdirs/usr/ports/science/erkale/work-parallel/.build
*** Error code 1
Stop.
make[2]: stopped in /wrkdirs/usr/ports/science/erkale/work-parallel/.build
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/science/erkale/work-parallel/.build
*** Error code 1
Stop.
make: stopped in /usr/ports/science/erkale
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