[package - 114amd64-default][biology/cytoscape] Failed for cytoscape-3.6.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Oct 29 09:58:15 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jkim at FreeBSD.org
Ident: $FreeBSD: head/biology/cytoscape/Makefile 518482 2019-11-26 21:46:12Z jkim $
Log URL: http://beefy9.nyi.freebsd.org/data/114amd64-default/553574/logs/cytoscape-3.6.1.log
Build URL: http://beefy9.nyi.freebsd.org/build.html?mastername=114amd64-default&build=553574
Log:
=>> Building biology/cytoscape
build started at Thu Oct 29 09:52:40 UTC 2020
port directory: /usr/ports/biology/cytoscape
package name: cytoscape-3.6.1
building for: FreeBSD 114amd64-default-job-04 11.4-RELEASE-p4 FreeBSD 11.4-RELEASE-p4 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/cytoscape/Makefile 518482 2019-11-26 21:46:12Z jkim $
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yuri at FreeBSD.org
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XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--End PLIST_SUB--
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--End SUB_LIST--
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=======================<phase: check-sanity >============================
===> License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.10.txz
[114amd64-default-job-04] Installing pkg-1.15.10...
[114amd64-default-job-04] Extracting pkg-1.15.10: .......... done
===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cytoscape-3.6.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by cytoscape-3.6.1 for building
===> Extracting for cytoscape-3.6.1
=> SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz.
=> SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for cytoscape-3.6.1
===========================================================================
=======================<phase: build-depends >============================
===> cytoscape-3.6.1 depends on executable: mvn - not found
===> Installing existing package /packages/All/maven-3.6.3.txz
[114amd64-default-job-04] Installing maven-3.6.3...
[114amd64-default-job-04] `-- Installing maven-wrapper-1_2...
[114amd64-default-job-04] `-- Extracting maven-wrapper-1_2: .. done
[114amd64-default-job-04] `-- Installing openjdk8-8.272.10.1_1...
<snip>
[INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ integration-test-support ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/target/classes
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ integration-test-support ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ integration-test-support ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ integration-test-support ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ integration-test-support ---
[INFO]
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ integration-test-support >>>
[INFO]
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ integration-test-support <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ integration-test-support ---
[INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/target/integration-test-support-3.6.1-sources.jar
[INFO]
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ integration-test-support ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/target/integration-test-support-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/integration-test-support/3.6.1/integration-test-support-3.6.1.jar
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/integration-test-support/3.6.1/integration-test-support-3.6.1.pom
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/target/integration-test-support-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/integration-test-support/3.6.1/integration-test-support-3.6.1-sources.jar
[INFO]
[INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ integration-test-support ---
[INFO] Installing org/cytoscape/integration-test-support/3.6.1/integration-test-support-3.6.1.jar
[INFO] Writing OBR metadata
[INFO]
[INFO] -----------------------< org.cytoscape:launcher >-----------------------
[INFO] Building Launcher 3.6.1 [101/117]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ launcher ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ launcher ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 2 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/classes
[INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/src/main/java/org/cytoscape/launcher/internal/Launcher.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/src/main/java/org/cytoscape/launcher/internal/Launcher.java uses unchecked or unsafe operations.
[INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/src/main/java/org/cytoscape/launcher/internal/Launcher.java: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ launcher ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ launcher ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ launcher ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ launcher ---
[INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1.jar
[INFO]
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ launcher >>>
[INFO]
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ launcher <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ launcher ---
[INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1-sources.jar
[INFO]
[INFO] --- maven-assembly-plugin:2.2-beta-5:single (make-assembly) @ launcher ---
[INFO] META-INF/MANIFEST.MF already added, skipping
[INFO] META-INF/ already added, skipping
[INFO] META-INF/maven/ already added, skipping
[INFO] org/ already added, skipping
[INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1-jar-with-dependencies.jar
[INFO] META-INF/MANIFEST.MF already added, skipping
[INFO] META-INF/ already added, skipping
[INFO] META-INF/maven/ already added, skipping
[INFO] org/ already added, skipping
[INFO]
[INFO] --- maven-install-plugin:2.4:install (default-install) @ launcher ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launcher/3.6.1/launcher-3.6.1.jar
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launcher/3.6.1/launcher-3.6.1.pom
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launcher/3.6.1/launcher-3.6.1-sources.jar
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launcher/3.6.1/launcher-3.6.1-jar-with-dependencies.jar
[INFO]
[INFO] -----------------< org.cytoscape:startlevel-assembly >------------------
[INFO] Building StartLevel Assembly 3.6.1 [102/117]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ startlevel-assembly ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO]
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ startlevel-assembly ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ startlevel-assembly ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ startlevel-assembly ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ startlevel-assembly ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ startlevel-assembly ---
[INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/target/startlevel-assembly-3.6.1.jar
[INFO]
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ startlevel-assembly >>>
[INFO]
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ startlevel-assembly <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ startlevel-assembly ---
[INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/target/startlevel-assembly-3.6.1-sources.jar
[INFO]
[INFO] --- maven-install-plugin:2.4:install (default-install) @ startlevel-assembly ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/target/startlevel-assembly-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/startlevel-assembly/3.6.1/startlevel-assembly-3.6.1.jar
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/startlevel-assembly/3.6.1/startlevel-assembly-3.6.1.pom
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/target/startlevel-assembly-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/startlevel-assembly/3.6.1/startlevel-assembly-3.6.1-sources.jar
[INFO]
[INFO] ------------------< org.cytoscape:task-testing-impl >-------------------
[INFO] Building Tasks for Testing 3.6.1 [103/117]
[INFO] -------------------------------[ bundle ]-------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ task-testing-impl ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ task-testing-impl ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 18 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/classes
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ task-testing-impl ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ task-testing-impl ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ task-testing-impl ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ task-testing-impl ---
[INFO]
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ task-testing-impl >>>
[INFO]
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ task-testing-impl <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ task-testing-impl ---
[INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1-sources.jar
[INFO]
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ task-testing-impl ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.jar
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.pom
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1-sources.jar
[INFO]
[INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ task-testing-impl ---
[INFO] Installing org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.jar
[INFO] Writing OBR metadata
[INFO]
[INFO] -----------------< org.cytoscape.distribution:parent >------------------
[INFO] Building Cytoscape Desktop Application Distribution 3.6.1 [104/117]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO]
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ parent >>>
[INFO]
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ parent <<<
[INFO]
[INFO]
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ parent ---
[INFO]
[INFO] --- maven-install-plugin:2.4:install (default-install) @ parent ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/parent/3.6.1/parent-3.6.1.pom
[INFO]
[INFO] ---------------< org.cytoscape.distribution:third-party >---------------
[INFO] Building Cytoscape Third-Party Dependencies (third-party) 3.6.1 [105/117]
[INFO] -------------------------------[ bundle ]-------------------------------
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ third-party ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/third-party/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ third-party ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ third-party ---
[INFO] Not copying test resources
[INFO]
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ third-party ---
[INFO] Not compiling test sources
[INFO]
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ third-party ---
[INFO] Tests are skipped.
[INFO]
[INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ third-party ---
*** Signal 9
Stop.
make: stopped in /usr/ports/biology/cytoscape
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