[package - head-armv7-default][biology/treepuzzle] Failed for treepuzzle-5.2 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Oct 29 02:23:26 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jan.lentfer at web.de
Last committer: mat at FreeBSD.org
Ident: $FreeBSD: head/biology/treepuzzle/Makefile 340722 2014-01-22 17:00:46Z mat $
Log URL: http://beefy12.nyi.freebsd.org/data/head-armv7-default/p553574_s367123/logs/treepuzzle-5.2.log
Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p553574_s367123
Log:
=>> Building biology/treepuzzle
build started at Thu Oct 29 02:23:10 UTC 2020
port directory: /usr/ports/biology/treepuzzle
package name: treepuzzle-5.2
building for: FreeBSD head-armv7-default-job-03 13.0-CURRENT FreeBSD 13.0-CURRENT 1300123 arm
maintained by: jan.lentfer at web.de
Makefile ident: $FreeBSD: head/biology/treepuzzle/Makefile 340722 2014-01-22 17:00:46Z mat $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300121
Jail OSVERSION: 1300123
Job Id: 03
!!! Jail is newer than host. (Jail: 1300123, Host: 1300121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv7
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1300123
UNAME_v=FreeBSD 13.0-CURRENT 1300123
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
QEMU_EMULATING=1
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/head-armv7-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
jan.lentfer at web.de
--End MAINTAINER--
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/treepuzzle/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/treepuzzle/work HOME=/wrkdirs/usr/ports/biology/treepuzzle/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/treepuzzle/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/treepuzzle/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/treepuzzle/work HOME=/wrkdirs/usr/ports/biology/treepuzzle/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/treepuzzle/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/treepuzzle" EXAMPLESDIR="share/examples/treepuzzle" DATADIR="share/treepuzzle" WWWDIR="www/treepuzzle" ETCDIR="etc/treepuzzle"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/treepuzzle DOCSDIR=/usr/local/share/doc/treepuzzle EXAMPLESDIR=/usr/local/share/examples/treepuzzle WWWDIR=/usr/local/www/treepuzzle ETCDIR=/usr/local/etc/treepuzzle
--End SUB_LIST--
---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv7
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=yes
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=yes
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=yes
CC_OUTPUT_9d218390_f00456e5=yes
CC_OUTPUT_9d218390_65ad290d=yes
CC_OUTPUT_9d218390_f2776b26=yes
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=yes
CC_OUTPUT_9d218390_160933ec=yes
CC_OUTPUT_9d218390_fb62803b=yes
_OBJC_CCVERSION_9d218390=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
_OBJC_ALTCCVERSION_9d218390=none
ARCH=armv7
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300123
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===========================================================================
=======================<phase: pkg-depends >============================
===> treepuzzle-5.2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.15.10.txz
[head-armv7-default-job-03] Installing pkg-1.15.10...
[head-armv7-default-job-03] Extracting pkg-1.15.10: .......... done
===> treepuzzle-5.2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of treepuzzle-5.2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by treepuzzle-5.2 for building
===========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by treepuzzle-5.2 for building
=> SHA256 Checksum OK for tree-puzzle-5.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by treepuzzle-5.2 for building
===> Extracting for treepuzzle-5.2
=> SHA256 Checksum OK for tree-puzzle-5.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for treepuzzle-5.2
===========================================================================
=======================<phase: build-depends >============================
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for treepuzzle-5.2
---------------------------------------------
If you want to install the parallel version of tree-puzzle, you need to install
from the ports and have to have a MPI-Implementation on your system.
The tree-puzzle configure script will then automatically build the normal and
parallel version (puzzle & ppuzzle).
---------------------------------------------
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
Segmentation fault
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
Segmentation fault
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
Segmentation fault
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
Segmentation fault
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
Segmentation fault
configure: loading site script /usr/ports/Templates/config.site
checking build system type... armv7-portbld-freebsd13.0
checking host system type... armv7-portbld-freebsd13.0
checking target system type... armv7-portbld-freebsd13.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... (cached) /usr/bin/awk
checking whether make sets ${MAKE}... qemu: uncaught target signal 11 (Segmentation fault) - core dumped
Segmentation fault
no
checking for gcc... /nxb-bin/usr/bin/cc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for style of include used by make... qemu: uncaught target signal 11 (Segmentation fault) - core dumped
Segmentation fault
BSD
checking dependency style of /nxb-bin/usr/bin/cc... Segmentation fault
Segmentation fault
Segmentation fault
Segmentation fault
none
checking whether /nxb-bin/usr/bin/cc and cc understand -c and -o together... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether make sets ${MAKE}... (cached) no
checking for mpcc... no
checking for hcc... no
checking for mpicc... no
checking for mpicc_lam... no
checking for mpicc_mpich... no
checking for cc... /usr/bin/cc
checking whether /usr/bin/cc works as MPI compiler... no
checking whether /usr/bin/cc needs -lmpi... no
checking whether /nxb-bin/usr/bin/cc handles quotes correctly... yes
checking for main in -lm... yes
checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for limits.h... (cached) yes
checking for /nxb-bin/usr/bin/cc option to accept ANSI C... none needed
checking for an ANSI C-conforming const... yes
checking for size_t... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/sprng/Makefile
config.status: creating doc/Makefile
config.status: creating data/Makefile
config.status: creating tests/Makefile
config.status: creating src/config.h
qemu: uncaught target signal 11 (Segmentation fault) - core dumped
Segmentation fault
config.status: executing depfiles commands
===========================================================================
=======================<phase: build >============================
===> Building for treepuzzle-5.2
Making all in src
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 294: Could not find ./.deps/consensus.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 295: Could not find ./.deps/gamma.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 296: Could not find ./.deps/ml1.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 297: Could not find ./.deps/ml2.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 298: Could not find ./.deps/mlparam.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 299: Could not find ./.deps/model1.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 300: Could not find ./.deps/model2.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 301: Could not find ./.deps/ppuzzle.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 302: Could not find ./.deps/pstep.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 303: Could not find ./.deps/puzzle1.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 304: Could not find ./.deps/puzzle2.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 305: Could not find ./.deps/sched.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 306: Could not find ./.deps/treesort.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 307: Could not find ./.deps/treetest.Po
make[2]: "/wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src/Makefile" line 308: Could not find ./.deps/util.Po
make[2]: Fatal errors encountered -- cannot continue
make[2]: stopped in /wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2/src
*** Error code 1
Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/treepuzzle/work/tree-puzzle-5.2
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/treepuzzle
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