[package - head-i386-default][science/apbs] Failed for apbs-1.5.102 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Mon Aug 24 07:50:05 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/science/apbs/Makefile 500699 2019-05-03 06:15:44Z yuri $
Log URL: http://beefy17.nyi.freebsd.org/data/head-i386-default/p545799_s364495/logs/apbs-1.5.102.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p545799_s364495
Log:
=>> Building science/apbs
build started at Mon Aug 24 07:49:32 UTC 2020
port directory: /usr/ports/science/apbs
package name: apbs-1.5.102
building for: FreeBSD head-i386-default-job-05 13.0-CURRENT FreeBSD 13.0-CURRENT 1300111 i386
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/apbs/Makefile 500699 2019-05-03 06:15:44Z yuri $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300100
Jail OSVERSION: 1300111
Job Id: 05
!!! Jail is newer than host. (Jail: 1300111, Host: 1300100) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1300111
UNAME_v=FreeBSD 13.0-CURRENT 1300111
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/apbs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/apbs/work HOME=/wrkdirs/usr/ports/science/apbs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/apbs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/apbs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/apbs/work HOME=/wrkdirs/usr/ports/science/apbs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/apbs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/apbs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/apbs" EXAMPLESDIR="share/examples/apbs" DATADIR="share/apbs" WWWDIR="www/apbs" ETCDIR="etc/apbs"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/apbs DOCSDIR=/usr/local/share/doc/apbs EXAMPLESDIR=/usr/local/share/examples/apbs WWWDIR=/usr/local/www/apbs ETCDIR=/usr/local/etc/apbs
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git at github.com:llvm/llvm-project.git llvmorg-11.0.0-rc1-47-gff47911ddfc) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300111
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> apbs-1.5.102 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.14.7.txz
[head-i386-default-job-05] Installing pkg-1.14.7...
[head-i386-default-job-05] Extracting pkg-1.14.7: .......... done
===> apbs-1.5.102 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of apbs-1.5.102
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by apbs-1.5.102 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by apbs-1.5.102 for building
=> SHA256 Checksum OK for Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz.
=> SHA256 Checksum OK for Electrostatics-FETK-0c6fdea_GH0.tar.gz.
=> SHA256 Checksum OK for Electrostatics-geoflow_c-e8ce510_GH0.tar.gz.
=> SHA256 Checksum OK for lwwilson1-TABIPB-7e3a407_GH0.tar.gz.
=> SHA256 Checksum OK for lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz.
=> SHA256 Checksum OK for davas301-pb_solvers-4858465_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by apbs-1.5.102 for building
===> Extracting for apbs-1.5.102
=> SHA256 Checksum OK for Electrostatics-apbs-pdb2pqr-apbs-1.5-102-g500c1473_GH0.tar.gz.
=> SHA256 Checksum OK for Electrostatics-FETK-0c6fdea_GH0.tar.gz.
=> SHA256 Checksum OK for Electrostatics-geoflow_c-e8ce510_GH0.tar.gz.
=> SHA256 Checksum OK for lwwilson1-TABIPB-7e3a407_GH0.tar.gz.
=> SHA256 Checksum OK for lwwilson1-mesh_routines-ddb75cb_GH0.tar.gz.
=> SHA256 Checksum OK for davas301-pb_solvers-4858465_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
<snip>
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:445:13: warning: format specifies type 'long' but the argument has type 'unsigned int' [-Wformat]
(thee->mallocBytes-thee->freeBytes),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:446:13: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
thee->mallocAreas, thee->mallocBytes,
^~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:446:32: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
thee->mallocAreas, thee->mallocBytes,
^~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:447:13: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
thee->freeBytes, thee->highWater,
^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:447:30: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
thee->freeBytes, thee->highWater,
^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:451:13: warning: format specifies type 'long' but the argument has type 'unsigned int' [-Wformat]
(vmemMisc.mallocBytes-vmemMisc.freeBytes),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:452:13: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
vmemMisc.mallocAreas, vmemMisc.mallocBytes,
^~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:452:35: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
vmemMisc.mallocAreas, vmemMisc.mallocBytes,
^~~~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:453:13: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
vmemMisc.freeBytes, vmemMisc.highWater,
^~~~~~~~~~~~~~~~~~
/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vmem.c:453:33: warning: format specifies type 'long' but the argument has type 'size_t' (aka 'unsigned int') [-Wformat]
vmemMisc.freeBytes, vmemMisc.highWater,
^~~~~~~~~~~~~~~~~~
15 warnings generated.
[47/102] /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnmfb.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnmfb.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnmfb.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vnmfb.c
[48/102] /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnm.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnm.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vnm.c
[49/102] /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vset.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vset.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vset.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vset.c
[50/102] /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/ziofb.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/ziofb.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/ziofb.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/ziofb.c
[51/102] /usr/bin/cc -Dmaloc_EXPORTS -I/usr/local/include -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vpred.c.o -MF externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vpred.c.o.d -o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vpred.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys/vpred.c
[52/102] : && /usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libmaloc.so -o /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so externals/fetk/maloc/src/CMakeFiles/maloc.dir/base/maloc_base.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/psh.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vcom.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmp.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/psh/vmpi.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vlex.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vpars.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vpup.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vsh.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsh/vyacc.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vio.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/viofb.c.o e
xternals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vmem.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnm.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vnmfb.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vpred.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/vset.c.o externals/fetk/maloc/src/CMakeFiles/maloc.dir/vsys/ziofb.c.o && :
[53/102] /usr/bin/cc -Dapbs_routines_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/CMakeFiles/apbs_routines.dir/routines.c.o -MF src/CMakeFiles/apbs_routines.dir/routines.c.o.d -o src/CMakeFiles/apbs_routines.dir/routines.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/routines.c
[54/102] : && /usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libapbs_routines.so -o lib/libapbs_routines.so src/CMakeFiles/apbs_routines.dir/routines.c.o -L/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-rpath,/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib: -lm -lstdc++ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so && :
[55/102] /usr/bin/cc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -MD -MT src/CMakeFiles/apbs.dir/main.c.o -MF src/CMakeFiles/apbs.dir/main.c.o.d -o src/CMakeFiles/apbs.dir/main.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/main.c
[56/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/no
sh.c
[57/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/gene
ric/mgparm.c
[58/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/g
eneric/femparm.c
[59/102] /usr/bin/cc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -MD -MT src/CMakeFiles/apbs.dir/routines.c.o -MF src/CMakeFiles/apbs.dir/routines.c.o.d -o src/CMakeFiles/apbs.dir/routines.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/routines.c
[60/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/sr
c/generic/pbamparm.c
[61/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs
/src/generic/pbsamparm.c
[62/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/g
eneric/bemparm.c
[63/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c147
3/apbs/src/generic/geoflowparm.c
[64/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/sr
c/generic/apolparm.c
[65/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/g
eneric/pbeparm.c
[66/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/gene
ric/vgreen.c
[67/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/valist.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/valist.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/valist.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/gene
ric/valist.c
[68/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic
/vatom.c
[69/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/va
cc.c
[70/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/vc
ap.c
[71/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/generic/vp
be.c
[72/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/g
eneric/vstring.c
[73/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/gene
ric/vclist.c
[74/102] /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -MF src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o.d -o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/buildAd.c
[75/102] /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -MF src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o.d -o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/buildBd.c
[76/102] /usr/bin/cc -Dapbs_generic_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o -MF src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o.d -o src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/gene
ric/vparam.c
[77/102] : && /usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libapbs_generic.so -o lib/libapbs_generic.so src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o src/generic/CMakeFiles/apbs_generic.dir/valist.c.o src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o src/generic/CMakeFiles/apbs_gen
eric.dir/vstring.c.o src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o -L/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-rpath,/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib: -lm -lstdc++ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so && :
[78/102] /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o -MF src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o.d -o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/buildPd.c
[79/102] /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o -MF src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o.d -o src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/cgd.c
[80/102] /usr/bin/cc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -MD -MT tools/manip/CMakeFiles/born.dir/born.c.o -MF tools/manip/CMakeFiles/born.dir/born.c.o.d -o tools/manip/CMakeFiles/born.dir/born.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/manip/born.c
[81/102] /usr/bin/cc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -MD -MT tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o -MF tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o.d -o tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/tools/manip/coulomb.c
[82/102] /usr/bin/cc -Dapbs_pmgc_EXPORTS -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/base -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsys -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/vsh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/src/psh -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src -Isrc -I/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fPIC -MD -MT src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o -MF src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o.d -o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/buildGd.c
[83/102] : && /usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libapbs_pmgc.so -o lib/libapbs_pmgc.so src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfas
d.c.o -L/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-rpath,/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib: -lm -lstdc++ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so && :
FAILED: lib/libapbs_pmgc.so
: && /usr/bin/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -g -DNDEBUG -fstack-protector-strong -shared -Wl,-soname,libapbs_pmgc.so -o lib/libapbs_pmgc.so src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -L/
wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib -Wl,-rpath,/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib: -lm -lstdc++ /wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/externals/fetk/maloc/lib/libmaloc.so && :
ld: error: duplicate symbol: charge
>>> defined at mypdec.h:72 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:72)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(charge)
>>> defined at mypdec.h:72 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:72)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x48)
ld: error: duplicate symbol: conc1
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc1)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x18)
ld: error: duplicate symbol: conc2
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc2)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x20)
ld: error: duplicate symbol: conc3
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc3)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x28)
ld: error: duplicate symbol: nion
>>> defined at mypdec.h:71 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:71)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(nion)
>>> defined at mypdec.h:71 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:71)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x40)
ld: error: duplicate symbol: relSize
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(relSize)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x38)
ld: error: duplicate symbol: sconc
>>> defined at mypdec.h:73 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:73)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(sconc)
>>> defined at mypdec.h:73 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:73)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x1D8)
ld: error: duplicate symbol: v1
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v1)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x0)
ld: error: duplicate symbol: v2
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v2)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x8)
ld: error: duplicate symbol: v3
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v3)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x10)
ld: error: duplicate symbol: vol
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(vol)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o:(.bss+0x30)
ld: error: duplicate symbol: charge
>>> defined at mypdec.h:72 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:72)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(charge)
>>> defined at mypdec.h:72 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:72)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x48)
ld: error: duplicate symbol: conc1
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc1)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x18)
ld: error: duplicate symbol: conc2
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc2)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x20)
ld: error: duplicate symbol: conc3
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(conc3)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x28)
ld: error: duplicate symbol: nion
>>> defined at mypdec.h:71 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:71)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(nion)
>>> defined at mypdec.h:71 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:71)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x40)
ld: error: duplicate symbol: relSize
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(relSize)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x38)
ld: error: duplicate symbol: sconc
>>> defined at mypdec.h:73 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:73)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(sconc)
>>> defined at mypdec.h:73 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:73)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x1D8)
ld: error: duplicate symbol: v1
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v1)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x0)
ld: error: duplicate symbol: v2
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o:(v2)
>>> defined at mypdec.h:70 (/wrkdirs/usr/ports/science/apbs/work/apbs-pdb2pqr-apbs-1.5-102-g500c1473/apbs/src/pmgc/mypdec.h:70)
>>> src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o:(.bss+0x8)
ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors)
cc: error: linker command failed with exit code 1 (use -v to see invocation)
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/apbs
More information about the freebsd-pkg-fallout
mailing list