[package - head-arm64-default][science/py-rmf] Failed for py37-rmf-1.1_1 in build/runaway
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Wed Aug 5 01:44:22 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: sunpoet at FreeBSD.org
Ident: $FreeBSD: head/science/py-rmf/Makefile 539491 2020-06-17 18:17:45Z sunpoet $
Log URL: http://thunderx1.nyi.freebsd.org/data/head-arm64-default/p542683_s363381/logs/py37-rmf-1.1_1.log
Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=head-arm64-default&build=p542683_s363381
Log:
=>> Building science/py-rmf
build started at Tue Aug 4 21:19:43 UTC 2020
port directory: /usr/ports/science/py-rmf
package name: py37-rmf-1.1_1
building for: FreeBSD head-arm64-default-job-13 13.0-CURRENT FreeBSD 13.0-CURRENT 1300101 arm64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/py-rmf/Makefile 539491 2020-06-17 18:17:45Z sunpoet $
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py37-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.14.6.txz
[head-arm64-default-job-13] Installing pkg-1.14.6...
[head-arm64-default-job-13] Extracting pkg-1.14.6: .......... done
===> py37-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py37-rmf-1.1_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py37-rmf-1.1_1 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py37-rmf-1.1_1 for building
=> SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py37-rmf-1.1_1 for building
===> Extracting for py37-rmf-1.1_1
=> SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py37-rmf-1.1_1
===> Applying FreeBSD patches for py37-rmf-1.1_1 from /usr/ports/science/py-rmf/files
===========================================================================
=======================<phase: build-depends >============================
===> py37-rmf-1.1_1 depends on executable: swig - not found
===> Installing existing package /packages/All/swig-4.0.2.txz
[head-arm64-default-job-13] Installing swig-4.0.2...
[head-arm64-default-job-13] `-- Installing pcre-8.44...
[head-arm64-default-job-13] `-- Extracting pcre-8.44: .......... done
[head-arm64-default-job-13] Extracting swig-4.0.2: .......... done
===> py37-rmf-1.1_1 depends on executable: swig - found
===> Returning to build of py37-rmf-1.1_1
===> py37-rmf-1.1_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.17.3_1.txz
[head-arm64-default-job-13] Installing cmake-3.17.3_1...
<snip>
[head-arm64-default-job-13] | | `-- Extracting indexinfo-0.3.1: .... done
[head-arm64-default-job-13] | `-- Extracting gettext-runtime-0.20.2: .......... done
[head-arm64-default-job-13] `-- Extracting rhash-1.3.9: .......... done
[head-arm64-default-job-13] Extracting cmake-3.17.3_1: .......... done
=====
Message from ca_root_nss-3.54:
--
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.
Assessment and verification of trust is the complete responsibility of the
system administrator.
This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.
This enables SSL Certificate Verification by client software without manual
intervention.
If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.
* /etc/ssl/cert.pem
* /usr/local/etc/ssl/cert.pem
* /usr/local/openssl/cert.pem
===> py37-rmf-1.1_1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of py37-rmf-1.1_1
===> py37-rmf-1.1_1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.10.0,2.txz
[head-arm64-default-job-13] Installing ninja-1.10.0,2...
[head-arm64-default-job-13] `-- Installing python37-3.7.8_1...
[head-arm64-default-job-13] | `-- Installing libffi-3.3...
[head-arm64-default-job-13] | `-- Extracting libffi-3.3: .......... done
[head-arm64-default-job-13] | `-- Installing readline-8.0.4...
[head-arm64-default-job-13] | `-- Extracting readline-8.0.4: .......... done
[head-arm64-default-job-13] `-- Extracting python37-3.7.8_1: .......... done
[head-arm64-default-job-13] Extracting ninja-1.10.0,2: ........ done
=====
Message from python37-3.7.8_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py37-gdbm databases/py-gdbm at py37
py37-sqlite3 databases/py-sqlite3 at py37
py37-tkinter x11-toolkits/py-tkinter at py37
===> py37-rmf-1.1_1 depends on executable: ninja - found
===> Returning to build of py37-rmf-1.1_1
===> py37-rmf-1.1_1 depends on file: /usr/local/bin/python3.7 - found
===========================================================================
=======================<phase: lib-depends >============================
===> py37-rmf-1.1_1 depends on shared library: libRMF.so - not found
===> Installing existing package /packages/All/rmf-1.1_8.txz
[head-arm64-default-job-13] Installing rmf-1.1_8...
[head-arm64-default-job-13] `-- Installing boost-libs-1.72.0_2...
[head-arm64-default-job-13] | `-- Installing icu-67.1,1...
[head-arm64-default-job-13] | `-- Extracting icu-67.1,1: .......... done
[head-arm64-default-job-13] `-- Extracting boost-libs-1.72.0_2: .......... done
[head-arm64-default-job-13] `-- Installing hdf-szip-2.1.1...
[head-arm64-default-job-13] `-- Extracting hdf-szip-2.1.1: .......... done
[head-arm64-default-job-13] `-- Installing hdf5-1.10.6,1...
[head-arm64-default-job-13] `-- Extracting hdf5-1.10.6,1: .......... done
[head-arm64-default-job-13] Extracting rmf-1.1_8: .......... done
=====
Message from boost-libs-1.72.0_2:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> py37-rmf-1.1_1 depends on shared library: libRMF.so - found (/usr/local/lib/libRMF.so)
===> Returning to build of py37-rmf-1.1_1
===========================================================================
=======================<phase: configure >============================
===> Configuring for py37-rmf-1.1_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/py-rmf/work-py37/.build
-- The C compiler identification is Clang 10.0.1
-- The CXX compiler identification is Clang 10.0.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE
-- Found Boost: /usr/local/include (found version "1.72.0") found components: system filesystem thread program_options iostreams chrono date_time atomic regex
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6")
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.6", minimum required is "1.8")
-- Deprecated backends (and hdf5) are enabled
-- Enabling clang C++11 support
-- Running Making RMF/HDF5.h
-- Updating /wrkdirs/usr/ports/science/py-rmf/work-py37/.build/include/RMF/HDF5.h
-- Running Making RMF.h
-- Updating /wrkdirs/usr/ports/science/py-rmf/work-py37/.build/include/RMF.h
-- Running setup_cmake.py
-- Running Running setup_cmake.py
-- Updating ./bin/Files.cmake
Updating ./examples/Files.cmake
Updating ./benchmark/Files.cmake
Updating ./tools/dev_tools/test/Files.cmake
Updating ./src/Files.cmake
Updating ./test/Files.cmake
-- Logging disabled
-- Found SWIG: /usr/local/bin/swig (found suitable version "4.0.2", minimum required is "1.3.40")
-- Python binary is /wrkdirs/usr/ports/science/py-rmf/work-py37/.bin/python (version 3.7.8)
-- Found PythonLibs: /usr/local/lib/libpython3.7m.so (found suitable exact version "3.7.8")
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:607 (message):
Policy CMP0078 is not set: UseSWIG generates standard target names. Run
"cmake --help-policy CMP0078" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Call Stack (most recent call first):
swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:460 (message):
Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module
flag. Run "cmake --help-policy CMP0086" for policy details. Use the
cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/UseSWIG.cmake:702 (SWIG_ADD_SOURCE_TO_MODULE)
swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:607 (message):
Policy CMP0078 is not set: UseSWIG generates standard target names. Run
"cmake --help-policy CMP0078" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Call Stack (most recent call first):
swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:460 (message):
Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module
flag. Run "cmake --help-policy CMP0086" for policy details. Use the
cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/UseSWIG.cmake:702 (SWIG_ADD_SOURCE_TO_MODULE)
swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_EXE_LINKER_FLAGS
CMAKE_SHARED_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
-- Build files have been written to: /wrkdirs/usr/ports/science/py-rmf/work-py37/.build
===========================================================================
=======================<phase: build >============================
===> Building for py37-rmf-1.1_1
[1/7] cd /wrkdirs/usr/ports/science/py-rmf/work-py37/.build/swig && /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/science/py-rmf/work-py37/.build/lib /wrkdirs/usr/ports/science/py-rmf/work-py37/.build/lib && /usr/local/bin/cmake -E env SWIG_LIB=/usr/local/share/swig/4.0.2 /usr/local/bin/swig -python -castmode -naturalvar -Wextra -fvirtual -DPySwigIterator=RMF_HDF5_PySwigIterator -c++ -DSwigPyIterator=RMF_HDF5_SwigPyIterator -DRMFEXPORT -outdir /wrkdirs/usr/ports/science/py-rmf/work-py37/.build/lib -c++ -interface _RMF_HDF5 -I/wrkdirs/usr/ports/science/py-rmf/work-py37/rmf-f917cf2/swig -I/wrkdirs/usr/ports/science/py-rmf/work-py37/rmf-f917cf2/include -I/wrkdirs/usr/ports/science/py-rmf/work-py37/.build/include -I/usr/local/include -I/usr/local/include/python3.7m -o /wrkdirs/usr/ports/science/py-rmf/work-py37/.build/lib/RMF_HDF5PYTHON_wrap.cxx /wrkdirs/usr/ports/science/py-rmf/work-py37/rmf-f917cf2/swig/RMF_HDF5.i
[2/7] /usr/bin/c++ -DRMF_SWIG_WRAPPER -D_RMF_HDF5_EXPORTS -I/wrkdirs/usr/ports/science/py-rmf/work-py37/rmf-f917cf2/swig -I/wrkdirs/usr/ports/science/py-rmf/work-py37/rmf-f917cf2/include -Iinclude -I/usr/local/include -I/usr/local/include/python3.7m -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -MF swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o.d -o swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -c lib/RMF_HDF5PYTHON_wrap.cxx
lib/RMF_HDF5PYTHON_wrap.cxx:3394:58: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-int-float-conversion]
if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, 0, ULONG_MAX)) {
~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~~
/usr/include/sys/limits.h:63:19: note: expanded from macro 'ULONG_MAX'
#define ULONG_MAX __ULONG_MAX /* max for an unsigned long */
^~~~~~~~~~~
/usr/include/machine/_limits.h:57:21: note: expanded from macro '__ULONG_MAX'
#define __ULONG_MAX 0xffffffffffffffffUL /* max for an unsigned long */
^~~~~~~~~~~~~~~~~~~~
lib/RMF_HDF5PYTHON_wrap.cxx:3550:65: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-int-float-conversion]
if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, LONG_MIN, LONG_MAX)) {
~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~
/usr/include/sys/limits.h:64:18: note: expanded from macro 'LONG_MAX'
#define LONG_MAX __LONG_MAX /* max for a long */
^~~~~~~~~~
/usr/include/machine/_limits.h:58:20: note: expanded from macro '__LONG_MAX'
#define __LONG_MAX 0x7fffffffffffffffL /* max for a long */
^~~~~~~~~~~~~~~~~~~
2 warnings generated.
[3/7] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -lRMF -fstack-protector-strong -shared -o lib/_RMF_HDF5.so swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -L/usr/local/lib -Wl,-rpath,:::::::::::::: && :
=>> Killing runaway build after 14400 seconds with no output
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