[package - head-arm64-default][science/py-rmf] Failed for py27-rmf-1.1_1 in build/runaway
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Aug 4 04:37:58 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: sunpoet at FreeBSD.org
Ident: $FreeBSD: head/science/py-rmf/Makefile 539491 2020-06-17 18:17:45Z sunpoet $
Log URL: http://thunderx1.nyi.freebsd.org/data/head-arm64-default/p542683_s363381/logs/py27-rmf-1.1_1.log
Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=head-arm64-default&build=p542683_s363381
Log:
=>> Building science/py-rmf
build started at Tue Aug 4 00:13:16 UTC 2020
port directory: /usr/ports/science/py-rmf
package name: py27-rmf-1.1_1
building for: FreeBSD head-arm64-default-job-12 13.0-CURRENT FreeBSD 13.0-CURRENT 1300101 arm64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/py-rmf/Makefile 539491 2020-06-17 18:17:45Z sunpoet $
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!!! Jail is newer than host. (Jail: 1300101, Host: 1300089) !!!
!!! This is not supported. !!!
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=======================<phase: check-sanity >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses Python 2.7 which is EOLed upstream.
It is scheduled to be removed on or after 2020-12-31.
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py27-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.14.6.txz
[head-arm64-default-job-12] Installing pkg-1.14.6...
[head-arm64-default-job-12] Extracting pkg-1.14.6: .......... done
===> py27-rmf-1.1_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py27-rmf-1.1_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses Python 2.7 which is EOLed upstream.
It is scheduled to be removed on or after 2020-12-31.
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py27-rmf-1.1_1 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses Python 2.7 which is EOLed upstream.
It is scheduled to be removed on or after 2020-12-31.
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by py27-rmf-1.1_1 for building
=> SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
<snip>
py37-tkinter x11-toolkits/py-tkinter at py37
===> py27-rmf-1.1_1 depends on executable: ninja - found
===> Returning to build of py27-rmf-1.1_1
===> py27-rmf-1.1_1 depends on file: /usr/local/bin/python2.7 - not found
===> Installing existing package /packages/All/python27-2.7.18_1.txz
[head-arm64-default-job-12] Installing python27-2.7.18_1...
[head-arm64-default-job-12] Extracting python27-2.7.18_1: .......... done
=====
Message from python27-2.7.18_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
bsddb databases/py-bsddb
gdbm databases/py-gdbm
sqlite3 databases/py-sqlite3
tkinter x11-toolkits/py-tkinter
--
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
EOLed upstream.
It is scheduled to be removed on or after 2020-12-31.
===> py27-rmf-1.1_1 depends on file: /usr/local/bin/python2.7 - found
===> Returning to build of py27-rmf-1.1_1
===========================================================================
=======================<phase: lib-depends >============================
===> py27-rmf-1.1_1 depends on shared library: libRMF.so - not found
===> Installing existing package /packages/All/rmf-1.1_8.txz
[head-arm64-default-job-12] Installing rmf-1.1_8...
[head-arm64-default-job-12] `-- Installing boost-libs-1.72.0_2...
[head-arm64-default-job-12] | `-- Installing icu-67.1,1...
[head-arm64-default-job-12] | `-- Extracting icu-67.1,1: .......... done
[head-arm64-default-job-12] `-- Extracting boost-libs-1.72.0_2: .......... done
[head-arm64-default-job-12] `-- Installing hdf-szip-2.1.1...
[head-arm64-default-job-12] `-- Extracting hdf-szip-2.1.1: .......... done
[head-arm64-default-job-12] `-- Installing hdf5-1.10.6,1...
[head-arm64-default-job-12] `-- Extracting hdf5-1.10.6,1: .......... done
[head-arm64-default-job-12] Extracting rmf-1.1_8: .......... done
=====
Message from boost-libs-1.72.0_2:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> py27-rmf-1.1_1 depends on shared library: libRMF.so - found (/usr/local/lib/libRMF.so)
===> Returning to build of py27-rmf-1.1_1
===========================================================================
=======================<phase: configure >============================
===> Configuring for py27-rmf-1.1_1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/py-rmf/work-py27/.build
-- The C compiler identification is Clang 10.0.1
-- The CXX compiler identification is Clang 10.0.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ - works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE
-- Found Boost: /usr/local/include (found version "1.72.0") found components: system filesystem thread program_options iostreams chrono date_time atomic regex
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6")
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.6", minimum required is "1.8")
-- Deprecated backends (and hdf5) are enabled
-- Enabling clang C++11 support
-- Running Making RMF/HDF5.h
-- Updating /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/include/RMF/HDF5.h
-- Running Making RMF.h
-- Updating /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/include/RMF.h
-- Running setup_cmake.py
-- Running Running setup_cmake.py
-- Updating ./bin/Files.cmake
Updating ./examples/Files.cmake
Updating ./benchmark/Files.cmake
Updating ./tools/dev_tools/test/Files.cmake
Updating ./src/Files.cmake
Updating ./test/Files.cmake
-- Logging disabled
-- Found SWIG: /usr/local/bin/swig (found suitable version "4.0.2", minimum required is "1.3.40")
-- Python binary is /wrkdirs/usr/ports/science/py-rmf/work-py27/.bin/python (version 2.7.18)
-- Found PythonLibs: /usr/local/lib/libpython2.7.so (found suitable exact version "2.7.18")
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:607 (message):
Policy CMP0078 is not set: UseSWIG generates standard target names. Run
"cmake --help-policy CMP0078" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Call Stack (most recent call first):
swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:460 (message):
Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module
flag. Run "cmake --help-policy CMP0086" for policy details. Use the
cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/UseSWIG.cmake:702 (SWIG_ADD_SOURCE_TO_MODULE)
swig/CMakeLists.txt:45 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:607 (message):
Policy CMP0078 is not set: UseSWIG generates standard target names. Run
"cmake --help-policy CMP0078" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Call Stack (most recent call first):
swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at /usr/local/share/cmake/Modules/UseSWIG.cmake:460 (message):
Policy CMP0086 is not set: UseSWIG honors SWIG_MODULE_NAME via -module
flag. Run "cmake --help-policy CMP0086" for policy details. Use the
cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/UseSWIG.cmake:702 (SWIG_ADD_SOURCE_TO_MODULE)
swig/CMakeLists.txt:84 (SWIG_ADD_LIBRARY)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_EXE_LINKER_FLAGS
CMAKE_SHARED_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
-- Build files have been written to: /wrkdirs/usr/ports/science/py-rmf/work-py27/.build
===========================================================================
=======================<phase: build >============================
===> Building for py27-rmf-1.1_1
[1/7] cd /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/swig && /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib && /usr/local/bin/cmake -E env SWIG_LIB=/usr/local/share/swig/4.0.2 /usr/local/bin/swig -python -castmode -naturalvar -Wextra -fvirtual -DPySwigIterator=RMF_HDF5_PySwigIterator -c++ -DSwigPyIterator=RMF_HDF5_SwigPyIterator -DRMFEXPORT -outdir /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib -c++ -interface _RMF_HDF5 -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/include -I/wrkdirs/usr/ports/science/py-rmf/work-py27/.build/include -I/usr/local/include -I/usr/local/include/python2.7 -o /wrkdirs/usr/ports/science/py-rmf/work-py27/.build/lib/RMF_HDF5PYTHON_wrap.cxx /wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig/RMF_HDF5.i
[2/7] /usr/bin/c++ -DRMF_SWIG_WRAPPER -D_RMF_HDF5_EXPORTS -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/swig -I/wrkdirs/usr/ports/science/py-rmf/work-py27/rmf-f917cf2/include -Iinclude -I/usr/local/include -I/usr/local/include/python2.7 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -MF swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o.d -o swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -c lib/RMF_HDF5PYTHON_wrap.cxx
In file included from lib/RMF_HDF5PYTHON_wrap.cxx:180:
In file included from /usr/local/include/python2.7/Python.h:88:
/usr/local/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* Object */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj /* Object */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register const wchar_t *w, /* wchar_t buffer */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register wchar_t *w, /* wchar_t buffer */
^~~~~~~~~
In file included from lib/RMF_HDF5PYTHON_wrap.cxx:180:
In file included from /usr/local/include/python2.7/Python.h:97:
/usr/local/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* string or Unicode object */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register char **s, /* pointer to buffer variable */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register Py_ssize_t *len /* pointer to length variable or NULL
^~~~~~~~~
lib/RMF_HDF5PYTHON_wrap.cxx:3394:58: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-int-float-conversion]
if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, 0, ULONG_MAX)) {
~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~~
/usr/include/sys/limits.h:63:19: note: expanded from macro 'ULONG_MAX'
#define ULONG_MAX __ULONG_MAX /* max for an unsigned long */
^~~~~~~~~~~
/usr/include/machine/_limits.h:57:21: note: expanded from macro '__ULONG_MAX'
#define __ULONG_MAX 0xffffffffffffffffUL /* max for an unsigned long */
^~~~~~~~~~~~~~~~~~~~
lib/RMF_HDF5PYTHON_wrap.cxx:3550:65: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-int-float-conversion]
if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, LONG_MIN, LONG_MAX)) {
~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~
/usr/include/sys/limits.h:64:18: note: expanded from macro 'LONG_MAX'
#define LONG_MAX __LONG_MAX /* max for a long */
^~~~~~~~~~
/usr/include/machine/_limits.h:58:20: note: expanded from macro '__LONG_MAX'
#define __LONG_MAX 0x7fffffffffffffffL /* max for a long */
^~~~~~~~~~~~~~~~~~~
9 warnings generated.
[3/7] : && /usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -lRMF -fstack-protector-strong -shared -o lib/_RMF_HDF5.so swig/CMakeFiles/_RMF_HDF5.dir/__/lib/RMF_HDF5PYTHON_wrap.cxx.o -L/usr/local/lib -Wl,-rpath,:::::::::::::: && :
=>> Killing runaway build after 14400 seconds with no output
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