[package - head-armv6-default][science/cdo] Failed for cdo-1.9.8_1 in lib-depends

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Thu Jun 11 11:53:59 UTC 2020


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet at FreeBSD.org
Last committer: sunpoet at FreeBSD.org
Ident:          $FreeBSD: head/science/cdo/Makefile 535392 2020-05-16 10:51:44Z sunpoet $
Log URL:        http://beefy8.nyi.freebsd.org/data/head-armv6-default/p538447_s362038/logs/cdo-1.9.8_1.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p538447_s362038
Log:

=>> Building science/cdo
build started at Thu Jun 11 11:53:33 UTC 2020
port directory: /usr/ports/science/cdo
package name: cdo-1.9.8_1
building for: FreeBSD head-armv6-default-job-02 13.0-CURRENT FreeBSD 13.0-CURRENT 1300097 arm
maintained by: sunpoet at FreeBSD.org
Makefile ident:      $FreeBSD: head/science/cdo/Makefile 535392 2020-05-16 10:51:44Z sunpoet $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300089
Jail OSVERSION: 1300097
Job Id: 02




!!! Jail is newer than host. (Jail: 1300097, Host: 1300089) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---Begin OPTIONS List---
===> The following configuration options are available for cdo-1.9.8_1:
     CGRIBEX=on: Use CGRIBEX library for GRIB1 files
     ECCODES=on: Use ecCodes for GRIB files
     HDF5=on: HDF-5 data format support
     JASPER=on: JPEG 2000 support via JasPer
     NETCDF=on: NetCDF data format support
     PROJ=on: PROJ.4 cartographic projections support
     SZIP=on: Szip compression support
     UDUNITS=on: Unidata units library (udunits) support
     UUID=on: UUID support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
sunpoet at FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--disable-data  --disable-extra  --disable-fortran  --disable-ieg  --disable-openmp  --disable-service  --enable-cdi-lib  --program-transform-name=""  --with-zlib=/usr --with-cgribex --with-eccodes --with-hdf5 --with-jasper --with-netcdf --with-proj --with-szlib --with-udunits2 --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work  HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cdo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work  HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/cdo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe  -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing   -isystem /usr/local/include -std=c++11 "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install
   -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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--PLIST_SUB--
CGRIBEX="" NO_CGRIBEX="@comment " ECCODES="" NO_ECCODES="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " UUID="" NO_UUID="@comment " OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cdo"  EXAMPLESDIR="share/examples/cdo"  DATADIR="share/cdo"  WWWDIR="www/cdo"  ETCDIR="etc/cdo"
--End PLIST_SUB--

--SUB_LIST--
CGRIBEX="" NO_CGRIBEX="@comment " ECCODES="" NO_ECCODES="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " UUID="" NO_UUID="@comment " PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/cdo DOCSDIR=/usr/local/share/doc/cdo EXAMPLESDIR=/usr/local/share/examples/cdo  WWWDIR=/usr/local/www/cdo ETCDIR=/usr/local/etc/cdo
--End SUB_LIST--

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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   cdo-1.9.8_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.14.4.txz
[head-armv6-default-job-02] Installing pkg-1.14.4...
[head-armv6-default-job-02] Extracting pkg-1.14.4: .......... done
===>   cdo-1.9.8_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of cdo-1.9.8_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-1.9.8_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-1.9.8_1 for building
=> SHA256 Checksum OK for cdo-1.9.8.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by cdo-1.9.8_1 for building
===>  Extracting for cdo-1.9.8_1
=> SHA256 Checksum OK for cdo-1.9.8.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for cdo-1.9.8_1
===>  Applying FreeBSD patches for cdo-1.9.8_1 from /usr/ports/science/cdo/files
===========================================================================
=======================<phase: build-depends  >============================
===>   cdo-1.9.8_1 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.txz
[head-armv6-default-job-02] Installing gmake-4.3_2...
[head-armv6-default-job-02] `-- Installing gettext-runtime-0.20.2...
[head-armv6-default-job-02] |   `-- Installing indexinfo-0.3.1...
[head-armv6-default-job-02] |   `-- Extracting indexinfo-0.3.1: .... done
[head-armv6-default-job-02] `-- Extracting gettext-runtime-0.20.2: .......... done
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
[head-armv6-default-job-02] Extracting gmake-4.3_2: .......... done
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
Abort trap
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
Abort trap
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
===>   cdo-1.9.8_1 depends on package: gmake>=4.3 - found
===>   Returning to build of cdo-1.9.8_1
===========================================================================
=======================<phase: lib-depends    >============================
===>   cdo-1.9.8_1 depends on shared library: libcgribex.so - not found
===>   Installing existing package /packages/All/cgribex-1.9.4.txz
[head-armv6-default-job-02] Installing cgribex-1.9.4...
[head-armv6-default-job-02] `-- Installing hdf-szip-2.1.1...
[head-armv6-default-job-02] `-- Extracting hdf-szip-2.1.1: .......... done
[head-armv6-default-job-02] `-- Installing jasper-2.0.16_1...
[head-armv6-default-job-02] |   `-- Installing freeglut-3.0.0_2...
[head-armv6-default-job-02] |   | `-- Installing libGLU-9.0.1...
[head-armv6-default-job-02] |   |   `-- Installing mesa-libs-19.0.8_1...
[head-armv6-default-job-02] |   |   | `-- Installing expat-2.2.8...
[head-armv6-default-job-02] |   |   | `-- Extracting expat-2.2.8: .......... done
[head-armv6-default-job-02] |   |   | `-- Installing libX11-1.6.9_1,1...
[head-armv6-default-job-02] |   |   |   `-- Installing libXau-1.0.9...
[head-armv6-default-job-02] |   |   |   `-- Extracting libXau-1.0.9: .......... done
[head-armv6-default-job-02] |   |   |   `-- Installing libXdmcp-1.1.3...
[head-armv6-default-job-02] |   |   |   | `-- Installing xorgproto-2020.1...
[head-armv6-default-job-02] |   |   |   | `-- Extracting xorgproto-2020.1: .......... done
[head-armv6-default-job-02] |   |   |   `-- Extracting libXdmcp-1.1.3: ......... done
[head-armv6-default-job-02] |   |   |   `-- Installing libxcb-1.13.1...
[head-armv6-default-job-02] |   |   |   | `-- Installing libpthread-stubs-0.4...
[head-armv6-default-job-02] |   |   |   | `-- Extracting libpthread-stubs-0.4: .... done
[head-armv6-default-job-02] |   |   |   | `-- Installing libxml2-2.9.10...
[head-armv6-default-job-02] |   |   |   | `-- Extracting libxml2-2.9.10: .......... done
[head-armv6-default-job-02] |   |   |   `-- Extracting libxcb-1.13.1: .......... done
[head-armv6-default-job-02] |   |   | `-- Extracting libX11-1.6.9_1,1: .......... done
[head-armv6-default-job-02] |   |   | `-- Installing libXdamage-1.1.5...
[head-armv6-default-job-02] |   |   |   `-- Installing libXfixes-5.0.3_2...
[head-armv6-default-job-02] |   |   |   `-- Extracting libXfixes-5.0.3_2: .......... done
[head-armv6-default-job-02] |   |   | `-- Extracting libXdamage-1.1.5: ......... done
[head-armv6-default-job-02] |   |   | `-- Installing libXext-1.3.4,1...
[head-armv6-default-job-02] |   |   | `-- Extracting libXext-1.3.4,1: .......... done
[head-armv6-default-job-02] |   |   | `-- Installing libXrandr-1.5.2...
[head-armv6-default-job-02] |   |   |   `-- Installing libXrender-0.9.10_2...
[head-armv6-default-job-02] |   |   |   `-- Extracting libXrender-0.9.10_2: .......... done
[head-armv6-default-job-02] |   |   | `-- Extracting libXrandr-1.5.2: .......... done
[head-armv6-default-job-02] |   |   | `-- Installing libXxf86vm-1.1.4_3...
[head-armv6-default-job-02] |   |   | `-- Extracting libXxf86vm-1.1.4_3: .......... done
[head-armv6-default-job-02] |   |   | `-- Installing libdrm-2.4.102,1...
[head-armv6-default-job-02] |   |   |   `-- Installing libpciaccess-0.16...
[head-armv6-default-job-02] |   |   |   | `-- Installing pciids-20200529...
[head-armv6-default-job-02] |   |   |   | `-- Extracting pciids-20200529: ..... done
[head-armv6-default-job-02] |   |   |   `-- Extracting libpciaccess-0.16: ......... done
[head-armv6-default-job-02] |   |   | `-- Extracting libdrm-2.4.102,1: .......... done
[head-armv6-default-job-02] |   |   | `-- Installing libxshmfence-1.3...
[head-armv6-default-job-02] |   |   | `-- Extracting libxshmfence-1.3: ......... done
[head-armv6-default-job-02] |   |   | `-- Installing wayland-1.18.0_3...
[head-armv6-default-job-02] |   |   |   `-- Installing libepoll-shim-0.0.20200602...
[head-armv6-default-job-02] |   |   |   `-- Extracting libepoll-shim-0.0.20200602: .......... done
[head-armv6-default-job-02] |   |   |   `-- Installing libffi-3.2.1_3...
[head-armv6-default-job-02] |   |   |   `-- Extracting libffi-3.2.1_3: .......... done
Assertion failed: (!have_mmap_lock()), function cpu_exec, file /wrkdirs/usr/ports/emulators/qemu-user-static/work/qemu-bsd-user-e21442a/accel/tcg/cpu-exec.c, line 697.
[head-armv6-default-job-02] |   |   | `-- Extracting wayland-1.18.0_3: .......... done
[head-armv6-default-job-02] |   |   `-- Extracting mesa-libs-19.0.8_1: .......... done
[head-armv6-default-job-02] |   | `-- Extracting libGLU-9.0.1: ...... done
[head-armv6-default-job-02] |   | `-- Installing libICE-1.0.10,1...
[head-armv6-default-job-02] |   | `-- Extracting libICE-1.0.10,1: .......... done
[head-armv6-default-job-02] |   | `-- Installing libXi-1.7.10,1...
[head-armv6-default-job-02] |   | `-- Extracting libXi-1.7.10,1: .......... done
[head-armv6-default-job-02] |   `-- Extracting freeglut-3.0.0_2: .......... done
[head-armv6-default-job-02] |   `-- Installing jpeg-turbo-2.0.4...
[head-armv6-default-job-02] |   `-- Extracting jpeg-turbo-2.0.4: .......... done
[head-armv6-default-job-02] |   `-- Installing libXmu-1.1.3,1...
[head-armv6-default-job-02] |   | `-- Installing libXt-1.2.0,1...
[head-armv6-default-job-02] |   |   `-- Installing libSM-1.2.3,1...
[head-armv6-default-job-02] |   |   `-- Extracting libSM-1.2.3,1: .......... done
[head-armv6-default-job-02] |   | `-- Extracting libXt-1.2.0,1: .......... done
[head-armv6-default-job-02] |   `-- Extracting libXmu-1.1.3,1: .......... done
[head-armv6-default-job-02] `-- Extracting jasper-2.0.16_1: .......... done
[head-armv6-default-job-02] Extracting cgribex-1.9.4: .......... done
=====
Message from freeglut-3.0.0_2:

--
Joystick support is untested and it is unknown if it works.

Do not hesitate to contact x11 at FreeBSD.org if this causes issues.
===>   cdo-1.9.8_1 depends on shared library: libcgribex.so - found (/usr/local/lib/libcgribex.so)
===>   Returning to build of cdo-1.9.8_1
===>   cdo-1.9.8_1 depends on shared library: libeccodes.so - not found
===>   Installing existing package /packages/All/eccodes-2.17.0.txz
Child process pid=82552 terminated abnormally: Segmentation fault
*** Error code 139

Stop.
make: stopped in /usr/ports/science/cdo


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