[package - head-amd64-default][math/libmesh] Failed for libmesh-1.4.1_3 in build

pkg-fallout at FreeBSD.org pkg-fallout at FreeBSD.org
Thu Apr 9 23:32:21 UTC 2020


You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident:          $FreeBSD: head/math/libmesh/Makefile 519824 2019-12-11 17:53:48Z jbeich $
Log URL:        http://beefy18.nyi.freebsd.org/data/head-amd64-default/p531167_s359731/logs/libmesh-1.4.1_3.log
Build URL:      http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p531167_s359731
Log:

=>> Building math/libmesh
build started at Thu Apr  9 23:26:51 UTC 2020
port directory: /usr/ports/math/libmesh
package name: libmesh-1.4.1_3
building for: FreeBSD head-amd64-default-job-12 13.0-CURRENT FreeBSD 13.0-CURRENT 1300089 amd64
maintained by: yuri at FreeBSD.org
Makefile ident:      $FreeBSD: head/math/libmesh/Makefile 519824 2019-12-11 17:53:48Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300076
Jail OSVERSION: 1300089
Job Id: 12




!!! Jail is newer than host. (Jail: 1300089, Host: 1300076) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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===> The following configuration options are available for libmesh-1.4.1_3:
     EXAMPLES=on: Build and/or install examples
     GLPK=off: Glpk linear programming solver library
     HDF5=off: HDF-5 data format support
     MPI=on: MPI (Message Passing Interface) support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
yuri at FreeBSD.org
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=======================<phase: check-sanity   >============================
===>  License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   libmesh-1.4.1_3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.14.2.txz
[head-amd64-default-job-12] Installing pkg-1.14.2...
[head-amd64-default-job-12] Extracting pkg-1.14.2: .......... done
===>   libmesh-1.4.1_3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of libmesh-1.4.1_3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by libmesh-1.4.1_3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by libmesh-1.4.1_3 for building
=> SHA256 Checksum OK for libMesh-libmesh-v1.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by libmesh-1.4.1_3 for building
===>  Extracting for libmesh-1.4.1_3
=> SHA256 Checksum OK for libMesh-libmesh-v1.4.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for libmesh-1.4.1_3
===>  Applying FreeBSD patches for libmesh-1.4.1_3
===========================================================================
=======================<phase: build-depends  >============================
===>   libmesh-1.4.1_3 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found
===>   Installing existing package /packages/All/eigen-3.3.7.txz
[head-amd64-default-job-12] Installing eigen-3.3.7...
[head-amd64-default-job-12] Extracting eigen-3.3.7: .......... done
===>   libmesh-1.4.1_3 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
<snip>
gmake[4]: Nothing to be done for 'all-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/reduced_basis/reduced_basis_ex7'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/reduced_basis/reduced_basis_ex7'
Making all in transient/transient_ex1
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/transient/transient_ex1'
ln -s -f ../../../examples/adaptivity/adaptivity_ex2/mesh.xda mesh.xda
gmake  all-am
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/transient/transient_ex1'
gmake[4]: Nothing to be done for 'all-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/transient/transient_ex1'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/transient/transient_ex1'
Making all in transient/transient_ex2
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/transient/transient_ex2'
gmake  all-am
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/transient/transient_ex2'
gmake[4]: Nothing to be done for 'all-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/transient/transient_ex2'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/transient/transient_ex2'
Making all in vector_fe/vector_fe_ex1
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex1'
gmake[3]: Nothing to be done for 'all'.
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex1'
Making all in vector_fe/vector_fe_ex2
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex2'
gmake  all-am
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex2'
gmake[4]: Nothing to be done for 'all-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex2'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex2'
Making all in vector_fe/vector_fe_ex3
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex3'
gmake  all-am
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex3'
gmake[4]: Nothing to be done for 'all-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex3'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex3'
Making all in vector_fe/vector_fe_ex4
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex4'
gmake  all-am
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex4'
gmake[4]: Nothing to be done for 'all-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex4'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples/vector_fe/vector_fe_ex4'
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples'
gmake[3]: Nothing to be done for 'all-am'.
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/examples'
Making all in doc
gmake[2]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/doc'
Making all in html
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/doc/html'
cat ./src/simple_header.html ./src/developers.html ./src/simple_footer.html > developers.html.html.tmp
cat ./src/simple_header.html ./src/examples.html ./src/simple_footer.html > examples.html.html.tmp
mv developers.html.html.tmp developers.html
mv examples.html.html.tmp examples.html
cat ./src/simple_header.html ./src/externalsoftware.html ./src/simple_footer.html > externalsoftware.html.html.tmp
cat ./src/simple_header.html ./src/index.html ./src/simple_footer.html > index.html.html.tmp
mv externalsoftware.html.html.tmp externalsoftware.html
mv index.html.html.tmp index.html
cat ./src/simple_header.html ./src/installation.html ./src/simple_footer.html > installation.html.html.tmp
cat ./src/simple_header.html ./src/publications.html ./src/simple_footer.html > publications.html.html.tmp
mv installation.html.html.tmp installation.html
mv publications.html.html.tmp publications.html
cat ./src/simple_header.html ./src/support.html ./src/simple_footer.html > support.html.html.tmp
mv support.html.html.tmp support.html
gmake  all-am
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/doc/html'
gmake[4]: Nothing to be done for 'all-am'.
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/doc/html'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/doc/html'
gmake[3]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/doc'
gmake[3]: Nothing to be done for 'all-am'.
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/doc'
gmake[2]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1/doc'
gmake[2]: Entering directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1'
c++ -DHAVE_CONFIG_H -I. -I./include  -DNDEBUG  -DLIBMESH_IS_COMPILING_ITSELF -I./contrib/nanoflann/include -I./contrib/fparser -I./contrib/libHilbert/include -I./contrib/gmv -I./contrib/qhull/qhull/src -I./contrib/qhull/qhull/src/libqhullcpp -I./contrib/triangle -I./contrib/tetgen -I./contrib/metis/include -I./contrib/gzstream -I./contrib/sfcurves -I./contrib/laspack  -I/usr/local/include/eigen3 -D_THREAD_SAFE -pthread -I/usr/local/include -I./include   -O2 -felide-constructors -Qunused-arguments -Wunused-parameter -Wunused    -fopenmp   -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -MT src/apps/getpot_parse_opt-getpot_parse.o -MD -MP -MF src/apps/.deps/getpot_parse_opt-getpot_parse.Tpo -c -o src/apps/getpot_parse_opt-getpot_parse.o `test -f 'src/apps/getpot_parse.C' || echo './'`src/apps/getpot_parse.C
c++ -DHAVE_CONFIG_H -I. -I./include  -DNDEBUG  -DLIBMESH_IS_COMPILING_ITSELF -I./contrib/nanoflann/include -I./contrib/fparser -I./contrib/libHilbert/include -I./contrib/gmv -I./contrib/qhull/qhull/src -I./contrib/qhull/qhull/src/libqhullcpp -I./contrib/triangle -I./contrib/tetgen -I./contrib/metis/include -I./contrib/gzstream -I./contrib/sfcurves -I./contrib/laspack  -I/usr/local/include/eigen3 -D_THREAD_SAFE -pthread -I/usr/local/include -I./include   -O2 -felide-constructors -Qunused-arguments -Wunused-parameter -Wunused    -fopenmp   -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -MT src/apps/amr_opt-amr.o -MD -MP -MF src/apps/.deps/amr_opt-amr.Tpo -c -o src/apps/amr_opt-amr.o `test -f 'src/apps/amr.C' || echo './'`src/apps/amr.C
In file included from src/apps/amr.C:21:
In file included from ./include/libmesh/dof_map.h:26:
In file included from ./include/libmesh/reference_counted_object.h:24:
In file included from ./include/libmesh/reference_counter.h:26:
In file included from ./include/libmesh/libmesh.h:27:
In file included from ./include/libmesh/parallel.h:39:
./include/libmesh/standard_type.h:180:56: warning: unused parameter 't' [-Wunused-parameter]
  StandardType(const StandardType<std::pair<T1, T2>> & t)
                                                       ^
./include/libmesh/standard_type.h:317:59: warning: unused parameter 't' [-Wunused-parameter]
  StandardType(const StandardType<std::tuple<Types...>> & t)
                                                          ^
In file included from src/apps/amr.C:21:
In file included from ./include/libmesh/dof_map.h:26:
In file included from ./include/libmesh/reference_counted_object.h:24:
In file included from ./include/libmesh/reference_counter.h:26:
In file included from ./include/libmesh/libmesh.h:27:
In file included from ./include/libmesh/parallel.h:47:
./include/libmesh/parallel_implementation.h:1854:60: warning: unused parameter 'send_tgt' [-Wunused-parameter]
inline void Communicator::send_receive (const unsigned int send_tgt,
                                                           ^
./include/libmesh/parallel_implementation.h:1856:60: warning: unused parameter 'recv_source' [-Wunused-parameter]
                                        const unsigned int recv_source,
                                                           ^
4 warnings generated.
mv -f src/apps/.deps/amr_opt-amr.Tpo src/apps/.deps/amr_opt-amr.Po
c++ -DHAVE_CONFIG_H -I. -I./include  -DNDEBUG  -DLIBMESH_IS_COMPILING_ITSELF -I./contrib/nanoflann/include -I./contrib/fparser -I./contrib/libHilbert/include -I./contrib/gmv -I./contrib/qhull/qhull/src -I./contrib/qhull/qhull/src/libqhullcpp -I./contrib/triangle -I./contrib/tetgen -I./contrib/metis/include -I./contrib/gzstream -I./contrib/sfcurves -I./contrib/laspack  -I/usr/local/include/eigen3 -D_THREAD_SAFE -pthread -I/usr/local/include -I./include   -O2 -felide-constructors -Qunused-arguments -Wunused-parameter -Wunused    -fopenmp   -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -MT src/apps/meshtool_opt-meshtool.o -MD -MP -MF src/apps/.deps/meshtool_opt-meshtool.Tpo -c -o src/apps/meshtool_opt-meshtool.o `test -f 'src/apps/meshtool.C' || echo './'`src/apps/meshtool.C
mv -f src/apps/.deps/getpot_parse_opt-getpot_parse.Tpo src/apps/.deps/getpot_parse_opt-getpot_parse.Po
c++ -DHAVE_CONFIG_H -I. -I./include  -DNDEBUG  -DLIBMESH_IS_COMPILING_ITSELF -I./contrib/nanoflann/include -I./contrib/fparser -I./contrib/libHilbert/include -I./contrib/gmv -I./contrib/qhull/qhull/src -I./contrib/qhull/qhull/src/libqhullcpp -I./contrib/triangle -I./contrib/tetgen -I./contrib/metis/include -I./contrib/gzstream -I./contrib/sfcurves -I./contrib/laspack  -I/usr/local/include/eigen3 -D_THREAD_SAFE -pthread -I/usr/local/include -I./include   -O2 -felide-constructors -Qunused-arguments -Wunused-parameter -Wunused    -fopenmp   -O2 -pipe -fstack-protector-strong -fno-strict-aliasing   -MT src/apps/calculator_opt-calculator.o -MD -MP -MF src/apps/.deps/calculator_opt-calculator.Tpo -c -o src/apps/calculator_opt-calculator.o `test -f 'src/apps/calculator.C' || echo './'`src/apps/calculator.C
In file included from src/apps/meshtool.C:39:
In file included from ./include/libmesh/boundary_info.h:26:
In file included from ./include/libmesh/parallel_object.h:25:
In file included from ./include/libmesh/parallel.h:39:
./include/libmesh/standard_type.h:180:56: warning: unused parameter 't' [-Wunused-parameter]
  StandardType(const StandardType<std::pair<T1, T2>> & t)
                                                       ^
./include/libmesh/standard_type.h:317:59: warning: unused parameter 't' [-Wunused-parameter]
  StandardType(const StandardType<std::tuple<Types...>> & t)
                                                          ^
In file included from src/apps/meshtool.C:39:
In file included from ./include/libmesh/boundary_info.h:26:
In file included from ./include/libmesh/parallel_object.h:25:
In file included from ./include/libmesh/parallel.h:47:
./include/libmesh/parallel_implementation.h:1854:60: warning: unused parameter 'send_tgt' [-Wunused-parameter]
inline void Communicator::send_receive (const unsigned int send_tgt,
                                                           ^
./include/libmesh/parallel_implementation.h:1856:60: warning: unused parameter 'recv_source' [-Wunused-parameter]
                                        const unsigned int recv_source,
                                                           ^
In file included from src/apps/calculator.C:28:
In file included from src/apps/L2system.h:19:
In file included from ./include/libmesh/fem_function_base.h:27:
In file included from ./include/libmesh/fem_context.h:27:
In file included from ./include/libmesh/fe_base.h:27:
In file included from ./include/libmesh/fe_abstract.h:24:
In file included from ./include/libmesh/reference_counted_object.h:24:
In file included from ./include/libmesh/reference_counter.h:26:
In file included from ./include/libmesh/libmesh.h:27:
In file included from ./include/libmesh/parallel.h:39:
./include/libmesh/standard_type.h:180:56: warning: unused parameter 't' [-Wunused-parameter]
  StandardType(const StandardType<std::pair<T1, T2>> & t)
                                                       ^
./include/libmesh/standard_type.h:317:59: warning: unused parameter 't' [-Wunused-parameter]
  StandardType(const StandardType<std::tuple<Types...>> & t)
                                                          ^
In file included from src/apps/calculator.C:28:
In file included from src/apps/L2system.h:19:
In file included from ./include/libmesh/fem_function_base.h:27:
In file included from ./include/libmesh/fem_context.h:27:
In file included from ./include/libmesh/fe_base.h:27:
In file included from ./include/libmesh/fe_abstract.h:24:
In file included from ./include/libmesh/reference_counted_object.h:24:
In file included from ./include/libmesh/reference_counter.h:26:
In file included from ./include/libmesh/libmesh.h:27:
In file included from ./include/libmesh/parallel.h:47:
./include/libmesh/parallel_implementation.h:1854:60: warning: unused parameter 'send_tgt' [-Wunused-parameter]
inline void Communicator::send_receive (const unsigned int send_tgt,
                                                           ^
./include/libmesh/parallel_implementation.h:1856:60: warning: unused parameter 'recv_source' [-Wunused-parameter]
                                        const unsigned int recv_source,
                                                           ^
In file included from src/apps/calculator.C:24:
In file included from /usr/include/c++/v1/map:479:
In file included from /usr/include/c++/v1/__tree:15:
/usr/include/c++/v1/memory:1720:13: error: static_assert failed due to requirement '__is_cpp17_move_insertable<std::__1::allocator<FunctionParserBase<double> >, false>::value' "The specified type does not meet the requirements of Cpp17MoveInsertable"
            static_assert(__is_cpp17_move_insertable<allocator_type>::value,
            ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/vector:952:21: note: in instantiation of function template specialization 'std::__1::allocator_traits<std::__1::allocator<FunctionParserBase<double> > >::__construct_backward_with_exception_guarantees<FunctionParserBase<double> *>' requested here
    __alloc_traits::__construct_backward_with_exception_guarantees(
                    ^
/usr/include/c++/v1/vector:1627:5: note: in instantiation of member function 'std::__1::vector<FunctionParserBase<double>, std::__1::allocator<FunctionParserBase<double> > >::__swap_out_circular_buffer' requested here
    __swap_out_circular_buffer(__v);
    ^
/usr/include/c++/v1/vector:1640:9: note: in instantiation of function template specialization 'std::__1::vector<FunctionParserBase<double>, std::__1::allocator<FunctionParserBase<double> > >::__push_back_slow_path<const FunctionParserBase<double> &>' requested here
        __push_back_slow_path(__x);
        ^
./include/libmesh/parsed_fem_function.h:632:15: note: in instantiation of member function 'std::__1::vector<FunctionParserBase<double>, std::__1::allocator<FunctionParserBase<double> > >::push_back' requested here
      parsers.push_back(fp);
              ^
./include/libmesh/parsed_fem_function.h:349:9: note: in instantiation of member function 'libMesh::ParsedFEMFunction<double>::partial_reparse' requested here
  this->partial_reparse(expression);
        ^
./include/libmesh/parsed_fem_function.h:219:9: note: in instantiation of member function 'libMesh::ParsedFEMFunction<double>::reparse' requested here
  this->reparse(expression);
        ^
src/apps/calculator.C:157:29: note: in instantiation of member function 'libMesh::ParsedFEMFunction<double>::ParsedFEMFunction' requested here
  ParsedFEMFunction<Number> goal_function(old_sys, calcfunc);
                            ^
4 warnings and 1 error generated.
gmake[2]: *** [Makefile:30306: src/apps/calculator_opt-calculator.o] Error 1
gmake[2]: *** Waiting for unfinished jobs....
4 warnings generated.
mv -f src/apps/.deps/meshtool_opt-meshtool.Tpo src/apps/.deps/meshtool_opt-meshtool.Po
gmake[2]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1'
gmake[1]: *** [Makefile:31077: all-recursive] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/libmesh/work/libmesh-1.4.1'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1

Stop.
make: stopped in /usr/ports/math/libmesh


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