[package - head-powerpc64-default][science/py-pymol] Failed for py27-pymol-2.3.0_1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Apr 2 22:21:20 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: antoine at FreeBSD.org
Ident: $FreeBSD: head/science/py-pymol/Makefile 526925 2020-02-23 15:25:53Z antoine $
Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p529066_s359288/logs/py27-pymol-2.3.0_1.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p529066_s359288
Log:
=>> Building science/py-pymol
build started at Thu Apr 2 21:59:44 UTC 2020
port directory: /usr/ports/science/py-pymol
package name: py27-pymol-2.3.0_1
building for: FreeBSD head-powerpc64-default-job-12 13.0-CURRENT FreeBSD 13.0-CURRENT 1300085 powerpc
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/py-pymol/Makefile 526925 2020-02-23 15:25:53Z antoine $
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Host OSVERSION: 1300084
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Job Id: 12
!!! Jail is newer than host. (Jail: 1300085, Host: 1300084) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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===> The following configuration options are available for py27-pymol-2.3.0_1:
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=======================<phase: check-sanity >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses deprecated version of python.
It is scheduled to be removed on or after 2020-08-15.
===> License PyMOL accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.13.2.txz
[head-powerpc64-default-job-12] Installing pkg-1.13.2...
[head-powerpc64-default-job-12] Extracting pkg-1.13.2: .......... done
===> py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py27-pymol-2.3.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses deprecated version of python.
It is scheduled to be removed on or after 2020-08-15.
===> License PyMOL accepted by the user
===> Fetching all distfiles required by py27-pymol-2.3.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Uses deprecated version of python.
It is scheduled to be removed on or after 2020-08-15.
<snip>
^~~~~~~~~
In file included from layer2/RepAngle.cpp:17:
In file included from layer0/os_python.h:34:
In file included from /usr/local/include/python2.7/Python.h:97:
/usr/local/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* string or Unicode object */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register char **s, /* pointer to buffer variable */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register Py_ssize_t *len /* pointer to length variable or NULL
^~~~~~~~~
:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* string or Unicode object */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register char **s, /* pointer to buffer variable */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register Py_ssize_t *len /* pointer to length variable or NULL
^~~~~~~~~
In file included from layer2/RepRibbon.cpp:17:
In file included from layer0/os_python.h:34:
In file included from /usr/local/include/python2.7/Python.h:88:
/usr/local/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* Object */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj /* Object */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register const wchar_t *w, /* wchar_t buffer */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register wchar_t *w, /* wchar_t buffer */
^~~~~~~~~
In file included from layer2/RepRibbon.cpp:17:
In file included from layer0/os_python.h:34:
In file included from /usr/local/include/python2.7/Python.h:97:
/usr/local/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* string or Unicode object */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register char **s, /* pointer to buffer variable */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register Py_ssize_t *len /* pointer to length variable or NULL
^~~~~~~~~
Exception in thread Thread-7 (most likely raised during interpreter shutdown):Exception in thread Thread-29 (most likely raised during interpreter shutdown):
Traceback (most recent call last):
Traceback (most recent call last): File "/usr/local/lib/python2.7/threading.py", line 801, in __bootstrap_inner
File "/usr/local/lib/python2.7/threading.py", line 801, in __bootstrap_inner File "/usr/local/lib/python2.7/threading.py", line 754, in run
File "/usr/local/lib/python2.7/threading.py", line 754, in run File "/usr/local/lib/python2.7/multiprocessing/pool.py", line 113, in worker
File "/usr/local/lib/python2.7/multiprocessing/pool.py", line 113, in worker File "/usr/local/lib/python2.7/multiprocessing/pool.py", line 65, in mapstar
File "/usr/local/lib/python2.7/multiprocessing/pool.py", line 65, in mapstar File "monkeypatch_distutils.py", line 141, in _single_compile
File "monkeypatch_distutils.py", line 141, in _single_compile<type 'exceptions.AttributeError'>: 'NoneType' object has no attribute 'errors'
<type 'exceptions.AttributeError'>: 'NoneType' object has no attribute 'errors'
In file included from modules/cealign/src/ccealignmodule.cpp:33:
In file included from layer0/os_python.h:34:
In file included from /usr/local/include/python2.7/Python.h:88:
/usr/local/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* Object */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj /* Object */
^~~~~~~~~
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-pymol
/usr/local/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register const wchar_t *w, /* wchar_t buffer */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register wchar_t *w, /* wchar_t buffer */
^~~~~~~~~
In file included from modules/cealign/src/ccealignmodule.cpp:33:
In file included from layer0/os_python.h:34:
In file included from /usr/local/include/python2.7/Python.h:97:
/usr/local/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* string or Unicode object */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register char **s, /* pointer to buffer variable */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register Py_ssize_t *len /* pointer to length variable or NULL
^~~~~~~~~
layer3/Executive.cpp:1440:19: warning: enumeration values 'cObjectCalculator' and 'cObjectAlignment' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:1968:14: warning: 11 enumeration values not handled in switch: 'cObjectMolecule', 'cObjectMap', 'cObjectMesh'... [-Wswitch]
switch(rec->obj->type) {
^
layer3/Executive.cpp:2860:15: warning: 10 enumeration values not handled in switch: 'cObjectMolecule', 'cObjectMap', 'cObjectMeasurement'... [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:2896:17: warning: 10 enumeration values not handled in switch: 'cObjectMesh', 'cObjectMeasurement', 'cObjectCallback'... [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:2951:13: warning: 10 enumeration values not handled in switch: 'cObjectMesh', 'cObjectMeasurement', 'cObjectCallback'... [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:3003:13: warning: 10 enumeration values not handled in switch: 'cObjectMesh', 'cObjectMeasurement', 'cObjectCallback'... [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:3301:19: warning: 12 enumeration values not handled in switch: 'cObjectMolecule', 'cObjectMap', 'cObjectMesh'... [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:4035:13: warning: 14 enumeration values not handled in switch: 'cLoadTypeUnknown', 'cLoadTypeSDF1', 'cLoadTypeR3D'... [-Wswitch]
switch (type) {
^
layer3/Executive.cpp:4691:11: warning: 11 enumeration values not handled in switch: 'cObjectMolecule', 'cObjectMesh', 'cObjectMeasurement'... [-Wswitch]
switch (obj->type) {
^
7 warnings generated.
layer3/Executive.cpp:6214:15: warning: 11 enumeration values not handled in switch: 'cObjectMesh', 'cObjectMeasurement', 'cObjectCallback'... [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:7947:11: warning: 10 enumeration values not handled in switch: 'cObjectMesh', 'cObjectMeasurement', 'cObjectCallback'... [-Wswitch]
switch (obj->type) {
^
7 warnings generated.
layer3/Executive.cpp:9478:15: warning: 6 enumeration values not handled in switch: 'cObjectMap', 'cObjectCallback', 'cObjectGadget'... [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:13448:27: warning: 10 enumeration values not handled in switch: 'cObjectMolecule', 'cObjectMeasurement', 'cObjectCallback'... [-Wswitch]
switch (obj->type) {
^
layer3/Executive.cpp:13480:23: warning: 10 enumeration values not handled in switch: 'cObjectMolecule', 'cObjectMeasurement', 'cObjectCallback'... [-Wswitch]
switch (obj->type) {
^
7 warninglayer3/Executive.cpp:15258:27: warning: enumeration value 'cObjectCalculator' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15301:27: warning: enumeration values 'cObjectCallback', 'cObjectGadget', and 'cObjectCalculator' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15343:27: warning: enumeration values 'cObjectCallback', 'cObjectGadget', and 'cObjectCalculator' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15386:27: warning: 6 enumeration values not handled in switch: 'cObjectCallback', 'cObjectCGO', 'cObjectGadget'... [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15409:27: warning: enumeration values 'cObjectCallback' and 'cObjectCalculator' not handled in switch [-Wswitch]
switch (rec->obj->type) {
^
layer3/Executive.cpp:15449:s generated.
7 warnings generated.
27: warning: 6 enumeration values not handled in switch: 'cObjectCallback', 'cObjectGadget', 'cObjectCalculator'... [-Wswitch]
switch (rec->obj->type) {
^
In file included from layer3/MoleculeExporter.cpp:21:
In file included from layer3/MoleculeExporter.h:7:
In file included from layer0/os_python.h:34:
In file included from /usr/local/include/python2.7/Python.h:88:
/usr/local/include/python2.7/unicodeobject.h:534:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* Object */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:553:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj /* Object */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:575:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register const wchar_t *w, /* wchar_t buffer */
^~~~~~~~~
/usr/local/include/python2.7/unicodeobject.h:593:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register wchar_t *w, /* wchar_t buffer */
^~~~~~~~~
In file included from layer3/MoleculeExporter.cpp:21:
In file included from layer3/MoleculeExporter.h:7:
In file included from layer0/os_python.h:34:
In file included from /usr/local/include/python2.7/Python.h:97:
/usr/local/include/python2.7/stringobject.h:173:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register PyObject *obj, /* string or Unicode object */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:174:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register char **s, /* pointer to buffer variable */
^~~~~~~~~
/usr/local/include/python2.7/stringobject.h:175:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register Py_ssize_t *len /* pointer to length variable or NULL
^~~~~~~~~
7 warnings generated.
7 warnings generated.
7 warnings generated.
7 warnings generated.
7 warnings generated.
7 warnings generated.
7 warnings generated.
7 warnings generated.
7 warnings generated.
7 warnings generated.
7 warnings generated.
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