[package - head-i386-default][biology/cufflinks] Failed for cufflinks-2.2.1.83_2 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Mar 26 06:05:42 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident: $FreeBSD: head/biology/cufflinks/Makefile 519824 2019-12-11 17:53:48Z jbeich $
Log URL: http://beefy17.nyi.freebsd.org/data/head-i386-default/p529158_s359311/logs/cufflinks-2.2.1.83_2.log
Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p529158_s359311
Log:
=>> Building biology/cufflinks
build started at Thu Mar 26 05:58:19 UTC 2020
port directory: /usr/ports/biology/cufflinks
package name: cufflinks-2.2.1.83_2
building for: FreeBSD head-i386-default-job-09 13.0-CURRENT FreeBSD 13.0-CURRENT 1300085 i386
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/biology/cufflinks/Makefile 519824 2019-12-11 17:53:48Z jbeich $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300076
Jail OSVERSION: 1300085
Job Id: 09
!!! Jail is newer than host. (Jail: 1300085, Host: 1300076) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1300085
UNAME_v=FreeBSD 13.0-CURRENT 1300085
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-5-gc81843e5
MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri at FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cufflinks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cufflinks/work HOME=/wrkdirs/usr/ports/biology/cufflinks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cufflinks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cufflinks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cufflinks/work HOME=/wrkdirs/usr/ports/biology/cufflinks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cufflinks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/eigen3 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cufflinks" EXAMPLESDIR="share/examples/cufflinks" DATADIR="share/cufflinks" WWWDIR="www/cufflinks" ETCDIR="etc/cufflinks"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cufflinks DOCSDIR=/usr/local/share/doc/cufflinks EXAMPLESDIR=/usr/local/share/examples/cufflinks WWWDIR=/usr/local/www/cufflinks ETCDIR=/usr/local/etc/cufflinks
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git at github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.0 (git at github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git at github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300085
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=524288
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 1024
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===> License BSL accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> cufflinks-2.2.1.83_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.13.2.txz
[head-i386-default-job-09] Installing pkg-1.13.2...
[head-i386-default-job-09] Extracting pkg-1.13.2: .......... done
ldconfig: aout support is deprecated
===> cufflinks-2.2.1.83_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of cufflinks-2.2.1.83_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSL accepted by the user
===> Fetching all distfiles required by cufflinks-2.2.1.83_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSL accepted by the user
===> Fetching all distfiles required by cufflinks-2.2.1.83_2 for building
=> SHA256 Checksum OK for cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSL accepted by the user
===> Fetching all distfiles required by cufflinks-2.2.1.83_2 for building
===> Extracting for cufflinks-2.2.1.83_2
=> SHA256 Checksum OK for cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for cufflinks-2.2.1.83_2
===> Applying FreeBSD patches for cufflinks-2.2.1.83_2
===========================================================================
=======================<phase: build-depends >============================
===> cufflinks-2.2.1.83_2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found
===> Installing existing package /packages/All/eigen-3.3.7.txz
[head-i386-default-job-09] Installing eigen-3.3.7...
[head-i386-default-job-09] Extracting eigen-3.3.7: .......... done
===> cufflinks-2.2.1.83_2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found
===> Returning to build of cufflinks-2.2.1.83_2
<snip>
./GHash.hh:496:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i;
^~~~~~~~~
./GHash.hh:553:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i;
^~~~~~~~~
In file included from clustering.cpp:10:
In file included from ./clustering.h:38:
In file included from ./abundances.h:23:
./hits.h:906:48: warning: field '_expression_file_name' will be initialized after field '_ifs' [-Wreorder-ctor]
HitFactory(insert_table, reference_table), _expression_file_name(expression_file_name), _ifs(expression_file_name.c_str()),
^
In file included from clustering.cpp:10:
In file included from ./clustering.h:38:
In file included from ./abundances.h:25:
In file included from ./bundles.h:24:
In file included from ./gtf_tracking.h:12:
In file included from ./gff.h:11:
./GHash.hh:90:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int pos=fCurrentEntry;
^~~~~~~~~
./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i,n,p,x,h;
^~~~~~~~~
./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i,n,p,x,h;
^~~~~~~~~
./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i,n,p,x,h;
^~~~~~~~~
./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i,n,p,x,h;
^~~~~~~~~
./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i,n,p,x,h;
^~~~~~~~~
./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,i,x,h,n;
^~~~~~~~~
./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int p,x,h,n;
^~~~~~~~~
./GHash.hh:416:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int pos=fCurrentEntry;
^~~~~~~~~
./GHash.hh:429:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int pos=fCurrentEntry;
^~~~~~~~~
./GHash.hh:443:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int pos=fCurrentEntry;
^~~~~~~~~
./GHash.hh:461:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int pos=0;
^~~~~~~~~
./GHash.hh:469:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int pos=fCapacity-1;
^~~~~~~~~
./GHash.hh:496:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i;
^~~~~~~~~
./GHash.hh:553:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register]
register int i;
^~~~~~~~~
In file included from cufflinks.cpp:28:
./replicates.h:224:57: warning: unused variable 's2' [-Wunused-variable]
const vector<boost::shared_ptr<Scaffold> >& s2 = bundles[i-1]->ref_scaffolds();
^
cufflinks.cpp:693:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
bool ref_guided = (ref_scaffs != NULL);
^
cufflinks.cpp:690:5: note: previous statement is here
if (bundle.hits().size() >= max_frags_per_bundle)
^
cufflinks.cpp:1279:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation]
if (!final_est_run && bundle_mode==REF_DRIVEN) // Bias needs to be learned
^
cufflinks.cpp:1275:5: note: previous statement is here
if (allow_junk_filtering)
^
cufflinks.cpp:1176:17: warning: unused variable 'map_mass' [-Wunused-variable]
long double map_mass = rg_props->normalized_map_mass();
^
cufflinks.cpp:1522:3: error: reference to 'thread' is ambiguous
thread asmbl(assemble_bundle,
^
/usr/include/c++/v1/__threading_support:605:24: note: candidate found by name lookup is 'std::__1::thread'
class _LIBCPP_TYPE_VIS thread;
^
/usr/local/include/boost/thread/detail/thread.hpp:163:29: note: candidate found by name lookup is 'boost::thread'
class BOOST_THREAD_DECL thread
^
In file included from clustering.cpp:10:
In file included from ./clustering.h:38:
In file included from ./abundances.h:25:
In file included from ./bundles.h:16:
In file included from /usr/local/include/boost/random.hpp:36:
In file included from /usr/local/include/boost/random/additive_combine.hpp:27:
/usr/local/include/boost/random/linear_congruential.hpp:140:20: warning: overlapping comparisons always evaluate to false [-Wtautological-overlap-compare]
if(_x <= 0 && _x != 0) {
~~~~~~~~^~~~~~~~~~
/usr/local/include/boost/random/linear_congruential.hpp:393:11: note: in instantiation of member function 'boost::random::linear_congruential_engine<unsigned long long, 25214903917, 11, 281474976710656>::seed' requested here
{ lcf.seed(cnv(x0)); }
^
In file included from cufflinks.cpp:23:
In file included from ./filters.h:18:
./genes.h:210:6: warning: private field '_id' is not used [-Wunused-private-field]
int _id;
^
47 warnings and 1 error generated.
gmake[3]: *** [Makefile:1672: cufflinks.o] Error 1
gmake[3]: *** Waiting for unfinished jobs....
42 warnings generated.
mv -f .deps/clustering.Tpo .deps/clustering.Po
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050/src'
gmake[2]: *** [Makefile:400: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050'
gmake[1]: *** [Makefile:341: all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050'
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/cufflinks
More information about the freebsd-pkg-fallout
mailing list