[package - head-powerpc64-default][biology/stringtie] Failed for stringtie-2.1.1 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Thu Feb 27 17:56:06 UTC 2020
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: mzaki at e-mail.ne.jp
Last committer: yuri at FreeBSD.org
Ident: $FreeBSD: head/biology/stringtie/Makefile 526322 2020-02-16 20:54:52Z yuri $
Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p526867_s356047/logs/stringtie-2.1.1.log
Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p526867_s356047
Log:
=>> Building biology/stringtie
build started at Thu Feb 27 17:55:29 UTC 2020
port directory: /usr/ports/biology/stringtie
package name: stringtie-2.1.1
building for: FreeBSD head-powerpc64-default-job-05 13.0-CURRENT FreeBSD 13.0-CURRENT 1300068 powerpc
maintained by: mzaki at e-mail.ne.jp
Makefile ident: $FreeBSD: head/biology/stringtie/Makefile 526322 2020-02-16 20:54:52Z yuri $
Poudriere version: 3.2.8-5-gc81843e5
Host OSVERSION: 1300047
Jail OSVERSION: 1300068
Job Id: 05
!!! Jail is newer than host. (Jail: 1300068, Host: 1300047) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
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--MAINTAINER--
mzaki at e-mail.ne.jp
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--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/stringtie/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/stringtie/work HOME=/wrkdirs/usr/ports/biology/stringtie/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/stringtie/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/stringtie/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/stringtie/work HOME=/wrkdirs/usr/ports/biology/stringtie/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/stringtie/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
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OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/stringtie" EXAMPLESDIR="share/examples/stringtie" DATADIR="share/stringtie" WWWDIR="www/stringtie" ETCDIR="etc/stringtie"
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PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/stringtie DOCSDIR=/usr/local/share/doc/stringtie EXAMPLESDIR=/usr/local/share/examples/stringtie WWWDIR=/usr/local/www/stringtie ETCDIR=/usr/local/etc/stringtie
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CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
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GID=0
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=======================<phase: check-sanity >============================
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> stringtie-2.1.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.13.2.txz
[head-powerpc64-default-job-05] Installing pkg-1.13.2...
[head-powerpc64-default-job-05] Extracting pkg-1.13.2: .......... done
===> stringtie-2.1.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of stringtie-2.1.1
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License MIT accepted by the user
=> stringtie-2.1.1.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch http://ccb.jhu.edu/software/stringtie/dl/stringtie-2.1.1.tar.gz
stringtie-2.1.1.tar.gz 1923 kB 16 MBps 00s
===> Fetching all distfiles required by stringtie-2.1.1 for building
===========================================================================
=======================<phase: checksum >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by stringtie-2.1.1 for building
=> SHA256 Checksum OK for stringtie-2.1.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License MIT accepted by the user
===> Fetching all distfiles required by stringtie-2.1.1 for building
===> Extracting for stringtie-2.1.1
=> SHA256 Checksum OK for stringtie-2.1.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for stringtie-2.1.1
===> Applying FreeBSD patches for stringtie-2.1.1
===========================================================================
=======================<phase: build-depends >============================
===> stringtie-2.1.1 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.2.1_3.txz
[head-powerpc64-default-job-05] Installing gmake-4.2.1_3...
[head-powerpc64-default-job-05] `-- Installing gettext-runtime-0.20.1...
[head-powerpc64-default-job-05] | `-- Installing indexinfo-0.3.1...
[head-powerpc64-default-job-05] | `-- Extracting indexinfo-0.3.1: .... done
[head-powerpc64-default-job-05] `-- Extracting gettext-runtime-0.20.1: .......... done
[head-powerpc64-default-job-05] Extracting gmake-4.2.1_3: .......... done
===> stringtie-2.1.1 depends on executable: gmake - found
===> Returning to build of stringtie-2.1.1
===========================================================================
=======================<phase: lib-depends >============================
===========================================================================
=======================<phase: configure >============================
===> Configuring for stringtie-2.1.1
===========================================================================
=======================<phase: build >============================
===> Building for stringtie-2.1.1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/stringtie/work/stringtie-2.1.1'
cd ./samtools-0.1.18 && gmake lib
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/stringtie/work/stringtie-2.1.1/samtools-0.1.18'
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bgzf.c -o bgzf.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. kstring.c -o kstring.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_aux.c -o bam_aux.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam.c -o bam.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_import.c -o bam_import.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. sam.c -o sam.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_index.c -o bam_index.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_pileup.c -o bam_pileup.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_lpileup.c -o bam_lpileup.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_md.c -o bam_md.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. razf.c -o razf.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. faidx.c -o faidx.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bedidx.c -o bedidx.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_sort.c -o bam_sort.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. sam_header.c -o sam_header.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_reheader.c -o bam_reheader.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. kprobaln.c -o kprobaln.o
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=0 -I. bam_cat.c -o bam_cat.o
ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/stringtie/work/stringtie-2.1.1/samtools-0.1.18'
c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -Wall -Wextra -I. -I./gclib -I./samtools-0.1.18 -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -pthread -c gclib/GBase.cpp -o gclib/GBase.o
cc1plus: error: unrecognized command line option "-std=c++0x"
gmake[1]: *** [Makefile:139: gclib/GBase.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/stringtie/work/stringtie-2.1.1'
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/stringtie
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