[package - head-amd64-default][science/rmf] Failed for rmf-1.1_8 in build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Tue Dec 31 14:07:48 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: jbeich at FreeBSD.org
Ident: $FreeBSD: head/science/rmf/Makefile 519824 2019-12-11 17:53:48Z jbeich $
Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p521577_s356213/logs/rmf-1.1_8.log
Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p521577_s356213
Log:
=>> Building science/rmf
build started at Tue Dec 31 14:03:39 UTC 2019
port directory: /usr/ports/science/rmf
package name: rmf-1.1_8
building for: FreeBSD head-amd64-default-job-13 13.0-CURRENT FreeBSD 13.0-CURRENT 1300072 amd64
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/science/rmf/Makefile 519824 2019-12-11 17:53:48Z jbeich $
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=======================<phase: check-sanity >============================
===> License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> rmf-1.1_8 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.12.0.txz
[head-amd64-default-job-13] Installing pkg-1.12.0...
[head-amd64-default-job-13] Extracting pkg-1.12.0: .......... done
===> rmf-1.1_8 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of rmf-1.1_8
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by rmf-1.1_8 for building
===========================================================================
=======================<phase: checksum >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by rmf-1.1_8 for building
=> SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License APACHE20 accepted by the user
===> Fetching all distfiles required by rmf-1.1_8 for building
===> Extracting for rmf-1.1_8
=> SHA256 Checksum OK for salilab-rmf-1.1-f917cf2_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for rmf-1.1_8
===> Applying FreeBSD patches for rmf-1.1_8
===========================================================================
=======================<phase: build-depends >============================
===> rmf-1.1_8 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-3.15.5.txz
[head-amd64-default-job-13] Installing cmake-3.15.5...
[head-amd64-default-job-13] `-- Installing curl-7.67.0...
[head-amd64-default-job-13] | `-- Installing ca_root_nss-3.48...
[head-amd64-default-job-13] | `-- Extracting ca_root_nss-3.48: ........ done
[head-amd64-default-job-13] | `-- Installing libnghttp2-1.40.0...
[head-amd64-default-job-13] | `-- Extracting libnghttp2-1.40.0: .......... done
[head-amd64-default-job-13] `-- Extracting curl-7.67.0: .......... done
[head-amd64-default-job-13] `-- Installing expat-2.2.8...
<snip>
===========================================================================
=======================<phase: configure >============================
===> Configuring for rmf-1.1_8
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/science/rmf/work/.build
-- The C compiler identification is Clang 9.0.1
-- The CXX compiler identification is Clang 9.0.1
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1149 (message):
New Boost version may have incorrect or missing dependencies and imported
targets
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/FindBoost.cmake:1271 (_Boost_COMPONENT_DEPENDENCIES)
/usr/local/share/cmake/Modules/FindBoost.cmake:1909 (_Boost_MISSING_DEPENDENCIES)
CMakeLists.txt:31 (find_package)
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Found Threads: TRUE
-- Found Boost: /usr/local/include (found version "1.72.0") found components: system filesystem thread program_options iostreams chrono date_time atomic regex
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6")
-- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found suitable version "1.10.6", minimum required is "1.8")
-- Deprecated backends (and hdf5) are enabled
-- Enabling clang C++11 support
-- Running Making RMF/HDF5.h
-- Updating /wrkdirs/usr/ports/science/rmf/work/.build/include/RMF/HDF5.h
-- Running Making RMF.h
-- Updating /wrkdirs/usr/ports/science/rmf/work/.build/include/RMF.h
-- Running setup_cmake.py
-- Running Running setup_cmake.py
-- Updating ./bin/Files.cmake
Updating ./examples/Files.cmake
Updating ./benchmark/Files.cmake
Updating ./tools/dev_tools/test/Files.cmake
Updating ./src/Files.cmake
Updating ./test/Files.cmake
-- Logging disabled
-- Using VMD headers found in /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/plugins/vmd/include
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_CXX_FLAGS_DEBUG
CMAKE_C_FLAGS_DEBUG
CMAKE_C_FLAGS_RELEASE
CMAKE_VERBOSE_MAKEFILE
Python_ADDITIONAL_VERSIONS
-- Build files have been written to: /wrkdirs/usr/ports/science/rmf/work/.build
===========================================================================
=======================<phase: build >============================
===> Building for rmf-1.1_8
[1/93] cd /wrkdirs/usr/ports/science/rmf/work/.build/src && python /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/tools/build/make-embed.py /wrkdirs/usr/ports/science/rmf/work/.build/src/generated/ /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/examples/cpx.json /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/examples/imaginary.json /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/avro/Frame.json /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/deprecated_avro/All.json /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/deprecated_avro/Data.json /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/deprecated_avro/File.json /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/deprecated_avro/Frame.json /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/deprecated_avro/Nodes.json
[2/93] cd /wrkdirs/usr/ports/science/rmf/work/.build && python /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/tools/build/make_decorators.py
[3/93] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/BufferConstHandle.cpp.o -MF src/CMakeFiles/RMF-lib.dir/BufferConstHandle.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/BufferConstHandle.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/BufferConstHandle.cpp
[4/93] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/CoordinateTransformer.cpp.o -MF src/CMakeFiles/RMF-lib.dir/CoordinateTransformer.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/CoordinateTransformer.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/CoordinateTransformer.cpp
[5/93] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/Enum.cpp.o -MF src/CMakeFiles/RMF-lib.dir/Enum.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/Enum.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/Enum.cpp
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/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/avro/traits.cpp:523:10: warning: local variable 'ret' will be copied despite being returned by name [-Wreturn-std-move]
return ret;
^~~
/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/avro/traits.cpp:523:10: note: call 'std::move' explicitly to avoid copying
return ret;
^~~
std::move(ret)
1 warning generated.
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[27/93] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/decorators.cpp.o -MF src/CMakeFiles/RMF-lib.dir/decorators.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/decorators.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/decorators.cpp
[28/93] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/enums.cpp.o -MF src/CMakeFiles/RMF-lib.dir/enums.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/enums.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/enums.cpp
[29/93] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/exceptions.cpp.o -MF src/CMakeFiles/RMF-lib.dir/exceptions.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/exceptions.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/exceptions.cpp
[30/93] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/hdf5_wrapper.cpp.o -MF src/CMakeFiles/RMF-lib.dir/hdf5_wrapper.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/hdf5_wrapper.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/hdf5_wrapper.cpp
FAILED: src/CMakeFiles/RMF-lib.dir/hdf5_wrapper.cpp.o
/usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/hdf5_wrapper.cpp.o -MF src/CMakeFiles/RMF-lib.dir/hdf5_wrapper.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/hdf5_wrapper.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/hdf5_wrapper.cpp
/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/hdf5_wrapper.cpp:141:45: error: use of undeclared identifier 'H5F_LIBVER_18'; did you mean 'H5F_LIBVER_V18'?
RMF_HDF5_CALL(H5Pset_libver_bounds(plist, H5F_LIBVER_18, H5F_LIBVER_LATEST));
^~~~~~~~~~~~~
H5F_LIBVER_V18
/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include/RMF/HDF5/infrastructure_macros.h:29:8: note: expanded from macro 'RMF_HDF5_CALL'
if ((v) < 0) { \
^
/usr/local/include/H5Fpublic.h:180:5: note: 'H5F_LIBVER_V18' declared here
H5F_LIBVER_V18 = 1, /* Use the latest v18 format for storing objects */
^
1 error generated.
[31/93] /usr/bin/c++ -DAVRO_DYN_LINK -DAVRO_SOURCE -DRMF_EXPORT -DRMF_EXPORTS -DRMF_lib_EXPORTS -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/avrocpp/api -Isrc -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src -I/wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/include -Iinclude -I/usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC --std=c++11 -MD -MT src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/create.cpp.o -MF src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/create.cpp.o.d -o src/CMakeFiles/RMF-lib.dir/backend/deprecated_hdf5/create.cpp.o -c /wrkdirs/usr/ports/science/rmf/work/rmf-f917cf2/src/backend/deprecated_hdf5/create.cpp
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/rmf
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