[package - 120i386-default][math/py-scikit-umfpack] Failed for py27-scikit-umfpack-0.3.2_2 in configure
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri Oct 25 16:46:47 UTC 2019
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri at FreeBSD.org
Last committer: gerald at FreeBSD.org
Ident: $FreeBSD: head/math/py-scikit-umfpack/Makefile 507372 2019-07-26 20:46:53Z gerald $
Log URL: http://beefy5.nyi.freebsd.org/data/120i386-default/515319/logs/py27-scikit-umfpack-0.3.2_2.log
Build URL: http://beefy5.nyi.freebsd.org/build.html?mastername=120i386-default&build=515319
Log:
=>> Building math/py-scikit-umfpack
build started at Fri Oct 25 16:46:12 UTC 2019
port directory: /usr/ports/math/py-scikit-umfpack
package name: py27-scikit-umfpack-0.3.2_2
building for: FreeBSD 120i386-default-job-03 12.0-RELEASE-p11 FreeBSD 12.0-RELEASE-p11 i386
maintained by: yuri at FreeBSD.org
Makefile ident: $FreeBSD: head/math/py-scikit-umfpack/Makefile 507372 2019-07-26 20:46:53Z gerald $
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=======================<phase: check-sanity >============================
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===> py27-scikit-umfpack-0.3.2_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.12.0.txz
[120i386-default-job-03] Installing pkg-1.12.0...
[120i386-default-job-03] Extracting pkg-1.12.0: .......... done
===> py27-scikit-umfpack-0.3.2_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py27-scikit-umfpack-0.3.2_2
===========================================================================
=======================<phase: fetch-depends >============================
===========================================================================
=======================<phase: fetch >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-scikit-umfpack-0.3.2_2 for building
===========================================================================
=======================<phase: checksum >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-scikit-umfpack-0.3.2_2 for building
=> SHA256 Checksum OK for scikit-umfpack-0.3.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract >============================
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by py27-scikit-umfpack-0.3.2_2 for building
===> Extracting for py27-scikit-umfpack-0.3.2_2
=> SHA256 Checksum OK for scikit-umfpack-0.3.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===========================================================================
=======================<phase: patch >============================
===> Patching for py27-scikit-umfpack-0.3.2_2
===========================================================================
=======================<phase: build-depends >============================
===> py27-scikit-umfpack-0.3.2_2 depends on package: py27-numpy>0 - not found
===> Installing existing package /packages/All/py27-numpy-1.16.5_1,1.txz
[120i386-default-job-03] Installing py27-numpy-1.16.5_1,1...
[120i386-default-job-03] `-- Installing gcc9-9.2.0...
[120i386-default-job-03] | `-- Installing binutils-2.32_1,1...
[120i386-default-job-03] | | `-- Installing gettext-runtime-0.20.1...
[120i386-default-job-03] | | `-- Installing indexinfo-0.3.1...
[120i386-default-job-03] | | `-- Extracting indexinfo-0.3.1: .... done
[120i386-default-job-03] | | `-- Extracting gettext-runtime-0.20.1: .......... done
[120i386-default-job-03] | `-- Extracting binutils-2.32_1,1: .......... done
[120i386-default-job-03] | `-- Installing gmp-6.1.2_1...
[120i386-default-job-03] | `-- Extracting gmp-6.1.2_1: .......... done
[120i386-default-job-03] | `-- Installing mpc-1.1.0_2...
[120i386-default-job-03] | | `-- Installing mpfr-4.0.2...
[120i386-default-job-03] | | `-- Extracting mpfr-4.0.2: .......... done
[120i386-default-job-03] | `-- Extracting mpc-1.1.0_2: ......... done
<snip>
creating /tmp/tmp3EBo9y/tmp
creating /tmp/tmp3EBo9y/tmp/tmp3EBo9y
compile options: '-MMD -MF /tmp/tmp3EBo9y/file.c.d -c'
cc: /tmp/tmp3EBo9y/file.c
C compiler: cc -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC
creating /tmp/tmpUNv5nK/tmp
creating /tmp/tmpUNv5nK/tmp/tmpUNv5nK
compile options: '-I/usr/include -I/usr/local/include -I/usr/local/include/suitesparse -c'
cc: /tmp/tmpUNv5nK/source.c
cc /tmp/tmpUNv5nK/tmp/tmpUNv5nK/source.o -L/usr/local/lib -lcblas -o /tmp/tmpUNv5nK/a.out
/usr/local/lib/libcblas.so: undefined reference to `cgemv_'
/usr/local/lib/libcblas.so: undefined reference to `cscal_'
/usr/local/lib/libcblas.so: undefined reference to `sdot_'
/usr/local/lib/libcblas.so: undefined reference to `dtrmm_'
/usr/local/lib/libcblas.so: undefined reference to `zhpr_'
/usr/local/lib/libcblas.so: undefined reference to `snrm2_'
/usr/local/lib/libcblas.so: undefined reference to `zherk_'
/usr/local/lib/libcblas.so: undefined reference to `sspmv_'
/usr/local/lib/libcblas.so: undefined reference to `cswap_'
/usr/local/lib/libcblas.so: undefined reference to `dswap_'
/usr/local/lib/libcblas.so: undefined reference to `dgemm_'
/usr/local/lib/libcblas.so: undefined reference to `ztrmv_'
/usr/local/lib/libcblas.so: undefined reference to `zgbmv_'
/usr/local/lib/libcblas.so: undefined reference to `ctbsv_'
/usr/local/lib/libcblas.so: undefined reference to `dger_'
/usr/local/lib/libcblas.so: undefined reference to `dtpsv_'
/usr/local/lib/libcblas.so: undefined reference to `sspr_'
/usr/local/lib/libcblas.so: undefined reference to `cher_'
/usr/local/lib/libcblas.so: undefined reference to `caxpy_'
/usr/local/lib/libcblas.so: undefined reference to `ztpsv_'
/usr/local/lib/libcblas.so: undefined reference to `zscal_'
/usr/local/lib/libcblas.so: undefined reference to `sswap_'
/usr/local/lib/libcblas.so: undefined reference to `ctpsv_'
/usr/local/lib/libcblas.so: undefined reference to `dzasum_'
/usr/local/lib/libcblas.so: undefined reference to `daxpy_'
/usr/local/lib/libcblas.so: undefined reference to `ctrsv_'
/usr/local/lib/libcblas.so: undefined reference to `izamax_'
/usr/local/lib/libcblas.so: undefined reference to `sasum_'
/usr/local/lib/libcblas.so: undefined reference to `drotg_'
/usr/local/lib/libcblas.so: undefined reference to `dsymm_'
/usr/local/lib/libcblas.so: undefined reference to `zhpr2_'
/usr/local/lib/libcblas.so: undefined reference to `stpsv_'
/usr/local/lib/libcblas.so: undefined reference to `ssbmv_'
/usr/local/lib/libcblas.so: undefined reference to `cgbmv_'
/usr/local/lib/libcblas.so: undefined reference to `zhbmv_'
/usr/local/lib/libcblas.so: undefined reference to `srotmg_'
/usr/local/lib/libcblas.so: undefined reference to `cgemm_'
/usr/local/lib/libcblas.so: undefined reference to `dtpmv_'
/usr/local/lib/libcblas.so: undefined reference to `chemv_'
/usr/local/lib/libcblas.so: undefined reference to `ssyr2_'
/usr/local/lib/libcblas.so: undefined reference to `ctbmv_'
/usr/local/lib/libcblas.so: undefined reference to `saxpy_'
/usr/local/lib/libcblas.so: undefined reference to `drotm_'
/usr/local/lib/libcblas.so: undefined reference to `dnrm2_'
/usr/local/lib/libcblas.so: undefined reference to `ctrmm_'
/usr/local/lib/libcblas.so: undefined reference to `ztbsv_'
/usr/local/lib/libcblas.so: undefined reference to `dtrsv_'
/usr/local/lib/libcblas.so: undefined reference to `zdotu_'
/usr/local/lib/libcblas.so: undefined reference to `dsyr_'
/usr/local/lib/libcblas.so: undefined reference to `srot_'
/usr/local/lib/libcblas.so: undefined reference to `ccopy_'
/usr/local/lib/libcblas.so: undefined reference to `zgeru_'
/usr/local/lib/libcblas.so: undefined reference to `zhpmv_'
/usr/local/lib/libcblas.so: undefined reference to `csyr2k_'
/usr/local/lib/libcblas.so: undefined reference to `ctrsm_'
/usr/local/lib/libcblas.so: undefined reference to `sscal_'
/usr/local/lib/libcblas.so: undefined reference to `cgerc_'
/usr/local/lib/libcblas.so: undefined reference to `dcopy_'
/usr/local/lib/libcblas.so: undefined reference to `scnrm2_'
/usr/local/lib/libcblas.so: undefined reference to `zgemm_'
/usr/local/lib/libcblas.so: undefined reference to `sgbmv_'
/usr/local/lib/libcblas.so: undefined reference to `sspr2_'
/usr/local/lib/libcblas.so: undefined reference to `ztrsv_'
/usr/local/lib/libcblas.so: undefined reference to `cgeru_'
/usr/local/lib/libcblas.so: undefined reference to `dscal_'
/usr/local/lib/libcblas.so: undefined reference to `dgbmv_'
/usr/local/lib/libcblas.so: undefined reference to `chpr_'
/usr/local/lib/libcblas.so: undefined reference to `zdscal_'
/usr/local/lib/libcblas.so: undefined reference to `strmm_'
/usr/local/lib/libcblas.so: undefined reference to `ssymm_'
/usr/local/lib/libcblas.so: undefined reference to `zgemv_'
/usr/local/lib/libcblas.so: undefined reference to `ddot_'
/usr/local/lib/libcblas.so: undefined reference to `isamax_'
/usr/local/lib/libcblas.so: undefined reference to `drotmg_'
/usr/local/lib/libcblas.so: undefined reference to `zsyrk_'
/usr/local/lib/libcblas.so: undefined reference to `stbsv_'
/usr/local/lib/libcblas.so: undefined reference to `strsv_'
/usr/local/lib/libcblas.so: undefined reference to `scasum_'
/usr/local/lib/libcblas.so: undefined reference to `srotg_'
/usr/local/lib/libcblas.so: undefined reference to `sdsdot_'
/usr/local/lib/libcblas.so: undefined reference to `sgemm_'
/usr/local/lib/libcblas.so: undefined reference to `scopy_'
/usr/local/lib/libcblas.so: undefined reference to `zdotc_'
/usr/local/lib/libcblas.so: undefined reference to `dsyr2k_'
/usr/local/lib/libcblas.so: undefined reference to `dsyrk_'
/usr/local/lib/libcblas.so: undefined reference to `csscal_'
/usr/local/lib/libcblas.so: undefined reference to `dasum_'
/usr/local/lib/libcblas.so: undefined reference to `ssyr_'
/usr/local/lib/libcblas.so: undefined reference to `ssyr2k_'
/usr/local/lib/libcblas.so: undefined reference to `dspr2_'
/usr/local/lib/libcblas.so: undefined reference to `zher2_'
/usr/local/lib/libcblas.so: undefined reference to `dtrsm_'
/usr/local/lib/libcblas.so: undefined reference to `idamax_'
/usr/local/lib/libcblas.so: undefined reference to `dtbsv_'
/usr/local/lib/libcblas.so: undefined reference to `ctrmv_'
/usr/local/lib/libcblas.so: undefined reference to `strmv_'
/usr/local/lib/libcblas.so: undefined reference to `zaxpy_'
/usr/local/lib/libcblas.so: undefined reference to `zher_'
/usr/local/lib/libcblas.so: undefined reference to `ssymv_'
/usr/local/lib/libcblas.so: undefined reference to `zhemm_'
/usr/local/lib/libcblas.so: undefined reference to `dtrmv_'
/usr/local/lib/libcblas.so: undefined reference to `zgerc_'
/usr/local/lib/libcblas.so: undefined reference to `chemm_'
/usr/local/lib/libcblas.so: undefined reference to `zher2k_'
/usr/local/lib/libcblas.so: undefined reference to `ztpmv_'
/usr/local/lib/libcblas.so: undefined reference to `zswap_'
/usr/local/lib/libcblas.so: undefined reference to `dspmv_'
/usr/local/lib/libcblas.so: undefined reference to `zsymm_'
/usr/local/lib/libcblas.so: undefined reference to `ztrmm_'
/usr/local/lib/libcblas.so: undefined reference to `dtbmv_'
/usr/local/lib/libcblas.so: undefined reference to `dgemv_'
/usr/local/lib/libcblas.so: undefined reference to `sgemv_'
/usr/local/lib/libcblas.so: undefined reference to `chpr2_'
/usr/local/lib/libcblas.so: undefined reference to `cdotu_'
/usr/local/lib/libcblas.so: undefined reference to `ctpmv_'
/usr/local/lib/libcblas.so: undefined reference to `cher2k_'
/usr/local/lib/libcblas.so: undefined reference to `csymm_'
/usr/local/lib/libcblas.so: undefined reference to `ztrsm_'
/usr/local/lib/libcblas.so: undefined reference to `cherk_'
/usr/local/lib/libcblas.so: undefined reference to `cdotc_'
/usr/local/lib/libcblas.so: undefined reference to `dsbmv_'
/usr/local/lib/libcblas.so: undefined reference to `csyrk_'
/usr/local/lib/libcblas.so: undefined reference to `stpmv_'
/usr/local/lib/libcblas.so: undefined reference to `chpmv_'
/usr/local/lib/libcblas.so: undefined reference to `sger_'
/usr/local/lib/libcblas.so: undefined reference to `cher2_'
/usr/local/lib/libcblas.so: undefined reference to `zsyr2k_'
/usr/local/lib/libcblas.so: undefined reference to `strsm_'
/usr/local/lib/libcblas.so: undefined reference to `dznrm2_'
/usr/local/lib/libcblas.so: undefined reference to `stbmv_'
/usr/local/lib/libcblas.so: undefined reference to `chbmv_'
/usr/local/lib/libcblas.so: undefined reference to `dsyr2_'
/usr/local/lib/libcblas.so: undefined reference to `dsdot_'
/usr/local/lib/libcblas.so: undefined reference to `zcopy_'
/usr/local/lib/libcblas.so: undefined reference to `dspr_'
/usr/local/lib/libcblas.so: undefined reference to `icamax_'
/usr/local/lib/libcblas.so: undefined reference to `dsymv_'
/usr/local/lib/libcblas.so: undefined reference to `zhemv_'
/usr/local/lib/libcblas.so: undefined reference to `ssyrk_'
/usr/local/lib/libcblas.so: undefined reference to `srotm_'
/usr/local/lib/libcblas.so: undefined reference to `drot_'
/usr/local/lib/libcblas.so: undefined reference to `ztbmv_'
cc: error: linker command failed with exit code 1 (use -v to see invocation)
cc /tmp/tmpUNv5nK/tmp/tmpUNv5nK/source.o -L/usr/local/lib -lblas -o /tmp/tmpUNv5nK/a.out
/tmp/tmpUNv5nK/tmp/tmpUNv5nK/source.o: In function `main':
source.c:(.text+0xeb): undefined reference to `cblas_ddot'
cc: error: linker command failed with exit code 1 (use -v to see invocation)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 250, in <module>
setup_package()
File "setup.py", line 247, in setup_package
setup(**metadata)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/core.py", line 137, in setup
config = configuration()
File "setup.py", line 143, in configuration
config.add_subpackage('scikits.umfpack')
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1036, in add_subpackage
caller_level = 2)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1005, in get_subpackage
caller_level = caller_level + 1)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 942, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "scikits/umfpack/setup.py", line 27, in configuration
blas_info = get_info('blas_opt')
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 448, in get_info
return cl().get_info(notfound_action)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 641, in get_info
self.calc_info()
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 1661, in calc_info
blas_info = get_info('blas')
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 448, in get_info
return cl().get_info(notfound_action)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 641, in get_info
self.calc_info()
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 1697, in calc_info
lib = self.has_cblas(info)
File "/usr/local/lib/python2.7/site-packages/numpy/distutils/system_info.py", line 1740, in has_cblas
extra_postargs=info.get('extra_link_args', []))
File "/usr/local/lib/python2.7/distutils/ccompiler.py", line 700, in link_executable
debug, extra_preargs, extra_postargs, None, target_lang)
File "/usr/local/lib/python2.7/distutils/unixccompiler.py", line 202, in link
raise LinkError, msg
distutils.errors.LinkError: Command "cc /tmp/tmpUNv5nK/tmp/tmpUNv5nK/source.o -L/usr/local/lib -lblas -o /tmp/tmpUNv5nK/a.out" failed with exit status 1
*** Error code 1
Stop.
make: stopped in /usr/ports/math/py-scikit-umfpack
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