[RELEASE - head-default] Build failed for nauty-2.4r2 during build
pkg-fallout at FreeBSD.org
pkg-fallout at FreeBSD.org
Fri Jul 19 09:01:05 UTC 2013
Maintainer: cs at FreeBSD.org
Last committer: beat at FreeBSD.org
Ident: $FreeBSD: head/math/nauty/Makefile 300896 2012-07-14 13:54:48Z beat $
Log URL: http://beefy1.isc.freebsd.org/bulk/head-default/2013-07-18_22h43m19s/logs/nauty-2.4r2.log
Build URL: http://beefy1.isc.freebsd.org/bulk/head-default/2013-07-18_22h43m19s
Log:
====>> Building math/nauty
build started at Fri Jul 19 09:00:58 UTC 2013
port directory: /usr/ports/math/nauty
building for: FreeBSD head-default-job-04 10.0-CURRENT FreeBSD 10.0-CURRENT i386
maintained by: cs at FreeBSD.org
Makefile ident: $FreeBSD: head/math/nauty/Makefile 300896 2012-07-14 13:54:48Z beat $
Poudriere version: 3.1-pre
---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1000035
UNAME_v=FreeBSD 10.0-CURRENT
UNAME_r=10.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/head-default/ref
PKG_EXT=txz
FORCE_PACKAGE=yes
tpid=93785
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
NBPARALLEL=24
PKGNG=1
PKGNAME=nauty-2.4r2
PKG_DELETE=/usr/local/sbin/pkg delete -y -f
PKG_ADD=/usr/local/sbin/pkg add
PWD=/root
MASTERNAME=head-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
SKIPSANITY=1
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---
---Begin OPTIONS List---
---End OPTIONS List---
--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--
--MAKE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444"
--End MAKE_ENV--
--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/nauty
DOCSDIR=/usr/local/share/doc/nauty
EXAMPLESDIR=/usr/local/share/examples/nauty
WWWDIR=/usr/local/www/nauty
ETCDIR=/usr/local/etc/nauty
--End SUB_LIST--
---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=yes
---End make.conf---
===> Cleaning for nauty-2.4r2
=======================<phase: check-config >============================
=========================================================================
=======================<phase: pkg-depends >============================
===> nauty-2.4r2 depends on file: /usr/local/sbin/pkg - not found
===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===> Installing existing package /packages/All/pkg-1.1.4_1.txz
Installing pkg-1.1.4_1... done
If you are upgrading from the old package format, first run:
# pkg2ng
===> Returning to build of nauty-2.4r2
=========================================================================
=======================<phase: fetch-depends >============================
=========================================================================
=======================<phase: fetch >============================
===> Fetching all distfiles required by nauty-2.4r2 for building
=========================================================================
=======================<phase: checksum >============================
===> Fetching all distfiles required by nauty-2.4r2 for building
=> SHA256 Checksum OK for nauty24r2.tar.gz.
=========================================================================
=======================<phase: extract-depends>============================
=========================================================================
=======================<phase: extract >============================
===> Fetching all distfiles required by nauty-2.4r2 for building
===> Extracting for nauty-2.4r2
=> SHA256 Checksum OK for nauty24r2.tar.gz.
=========================================================================
=======================<phase: patch-depends >============================
=========================================================================
=======================<phase: patch >============================
===> Patching for nauty-2.4r2
=========================================================================
=======================<phase: build-depends >============================
=========================================================================
=======================<phase: lib-depends >============================
=========================================================================
=======================<phase: configure >============================
===> Configuring for nauty-2.4r2
===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/math/nauty/work/nauty24r2/configure
configure: loading site script /usr/ports/Templates/config.site
checking build system type... i386-portbld-freebsd10.0
checking host system type... i386-portbld-freebsd10.0
checking for gcc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
CFLAGS=-O2 -pipe -fno-strict-aliasing
MORECFLAGS=
checking for sys/wait.h that is POSIX.1 compatible... (cached) yes
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stddef.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/wait.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for errno.h... (cached) yes
checking for pid_t... (cached) yes
checking if malloc is declared in stdlib.h or malloc.h... 1
checking if ftell is declared in stdio.h... 1
checking if fdopen is declared in stdio.h... 1
checking if popen is declared in stdio.h... 1
checking if putenv is declared in stdlib.h... 1
checking if setenv is declared in stdlib.h... 1
checking if INFINITY is declared in math.h... 1
checking for int... (cached) yes
checking size of int... 4
checking for long... (cached) yes
checking size of long... 4
checking for long long... yes
checking size of long long... 8
checking for an ANSI C-conforming const... yes
checking for isatty... yes
checking for times... yes
checking for time... yes
checking for gettimeofday... (cached) yes
checking for times... (cached) yes
checking for getrusage... (cached) yes
checking for perror... yes
checking for pipe... (cached) yes
checking for wait... yes
checking for popen... yes
checking for putenv... (cached) yes
checking for setenv... (cached) yes
checking for getc_unlocked... yes
checking for flockfile... yes
checking for gsort... no
checking for sort... sort
checking if sort supports the -k switch... 1
configure: creating ./config.status
config.status: creating makefile
config.status: creating nauty.h
config.status: creating naututil.h
config.status: creating gtools.h
=========================================================================
=======================<phase: build >============================
===> Building for nauty-2.4r2
cc -c -O2 -pipe -fno-strict-aliasing naututil.c
naututil.c:365:53: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (w < 0 || w >= n || !digraph && w == v)
~~ ~~~~~~~~~^~~~~~~~~
naututil.c:365:53: note: place parentheses around the '&&' expression to silence this warning
if (w < 0 || w >= n || !digraph && w == v)
^
( )
naututil.c:390:57: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (w < 0 || w >= n || !digraph && w == v)
~~ ~~~~~~~~~^~~~~~~~~
naututil.c:390:57: note: place parentheses around the '&&' expression to silence this warning
if (w < 0 || w >= n || !digraph && w == v)
^
( )
2 warnings generated.
cc -c -O2 -pipe -fno-strict-aliasing nauty.c
nauty.c:741:39: warning: '&&' within '||' [-Wlogical-op-parentheses]
getcanon && comp_canon >= 0))
~~~~~~~~~^~~~~~~~~~~~~~~~~~
nauty.c:741:39: note: place parentheses around the '&&' expression to silence this warning
getcanon && comp_canon >= 0))
^
( )
nauty.c:911:17: warning: add explicit braces to avoid dangling else [-Wdangling-else]
else
^
2 warnings generated.
cc -c -O2 -pipe -fno-strict-aliasing nautil.c
cc -c -O2 -pipe -fno-strict-aliasing nautinv.c
nautinv.c:392:35: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue;
~~~~~~~~~~~~~~^~~~~~~~ ~~
nautinv.c:392:35: note: place parentheses around the '&&' expression to silence this warning
if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue;
^
( )
nautinv.c:392:61: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue;
~~ ~~~~~~~~~~~~~~^~~~~~~
nautinv.c:392:61: note: place parentheses around the '&&' expression to silence this warning
if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue;
^
( )
nautinv.c:461:49: warning: '&&' within '||' [-Wlogical-op-parentheses]
cellsize[j-h] == si && cellstart[j-h] > st; )
~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
nautinv.c:461:49: note: place parentheses around the '&&' expression to silence this warning
cellsize[j-h] == si && cellstart[j-h] > st; )
^
( )
3 warnings generated.
cc -c -O2 -pipe -fno-strict-aliasing naugraph.c
cc -c -O2 -pipe -fno-strict-aliasing rng.c
cc -o dreadnaut -O2 -pipe -fno-strict-aliasing dreadnaut.c naututil.o nauty.o nautil.o nautinv.o naugraph.o rng.o
dreadnaut.c:451:17: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (minus && nperm == n || !minus && nperm == 0)
~~~~~~^~~~~~~~~~~~~ ~~
dreadnaut.c:451:17: note: place parentheses around the '&&' expression to silence this warning
if (minus && nperm == n || !minus && nperm == 0)
^
( )
dreadnaut.c:451:41: warning: '&&' within '||' [-Wlogical-op-parentheses]
if (minus && nperm == n || !minus && nperm == 0)
~~ ~~~~~~~^~~~~~~~~~~~~
dreadnaut.c:451:41: note: place parentheses around the '&&' expression to silence this warning
if (minus && nperm == n || !minus && nperm == 0)
^
( )
2 warnings generated.
cc -O2 -pipe -fno-strict-aliasing nauty.c -o nauty
nauty.c:741:39: warning: '&&' within '||' [-Wlogical-op-parentheses]
getcanon && comp_canon >= 0))
~~~~~~~~~^~~~~~~~~~~~~~~~~~
nauty.c:741:39: note: place parentheses around the '&&' expression to silence this warning
getcanon && comp_canon >= 0))
^
( )
nauty.c:911:17: warning: add explicit braces to avoid dangling else [-Wdangling-else]
else
^
2 warnings generated.
/usr/lib/crt1.o: In function `_start1':
/usr/src/lib/csu/i386-elf/crt1_c.c:(.text+0x156): undefined reference to `main'
/tmp/nauty-B5Vdow.o: In function `nauty':
nauty.c:(.text+0x161): undefined reference to `nautil_check'
nauty.c:(.text+0x1e4): undefined reference to `alloc_error'
nauty.c:(.text+0x234): undefined reference to `alloc_error'
nauty.c:(.text+0x280): undefined reference to `alloc_error'
nauty.c:(.text+0x2d0): undefined reference to `alloc_error'
nauty.c:(.text+0x320): undefined reference to `alloc_error'
/tmp/nauty-B5Vdow.o:nauty.c:(.text+0x370): more undefined references to `alloc_error' follow
/tmp/nauty-B5Vdow.o: In function `nauty':
nauty.c:(.text+0xa49): undefined reference to `nautil_freedyn'
/tmp/nauty-B5Vdow.o: In function `firstpathnode0':
nauty.c:(.text+0xb62): undefined reference to `alloc_error'
nauty.c:(.text+0xc2f): undefined reference to `doref'
nauty.c:(.text+0xd19): undefined reference to `maketargetcell'
nauty.c:(.text+0xf64): undefined reference to `nextelement'
nauty.c:(.text+0xfc8): undefined reference to `breakout'
nauty.c:(.text+0x109c): undefined reference to `shortprune'
nauty.c:(.text+0x1149): undefined reference to `nextelement'
/tmp/nauty-B5Vdow.o: In function `extra_autom':
nauty.c:(.text+0x1490): undefined reference to `writeperm'
nauty.c:(.text+0x14a5): undefined reference to `orbjoin'
/tmp/nauty-B5Vdow.o: In function `writemarker':
nauty.c:(.text+0x160f): undefined reference to `putstring'
nauty.c:(.text+0x161e): undefined reference to `itos'
nauty.c:(.text+0x162f): undefined reference to `putstring'
nauty.c:(.text+0x1644): undefined reference to `putstring'
nauty.c:(.text+0x165a): undefined reference to `itos'
nauty.c:(.text+0x166b): undefined reference to `putstring'
nauty.c:(.text+0x1680): undefined reference to `putstring'
nauty.c:(.text+0x16a7): undefined reference to `putstring'
nauty.c:(.text+0x16b6): undefined reference to `itos'
nauty.c:(.text+0x16c7): undefined reference to `putstring'
nauty.c:(.text+0x16dc): undefined reference to `putstring'
nauty.c:(.text+0x1703): undefined reference to `putstring'
nauty.c:(.text+0x1708): undefined reference to `labelorg'
nauty.c:(.text+0x1717): undefined reference to `itos'
nauty.c:(.text+0x1728): undefined reference to `putstring'
nauty.c:(.text+0x173d): undefined reference to `putstring'
nauty.c:(.text+0x1749): undefined reference to `itos'
nauty.c:(.text+0x175a): undefined reference to `putstring'
nauty.c:(.text+0x1776): undefined reference to `putstring'
nauty.c:(.text+0x1782): undefined reference to `itos'
nauty.c:(.text+0x1793): undefined reference to `putstring'
nauty.c:(.text+0x17a8): undefined reference to `putstring'
/tmp/nauty-B5Vdow.o: In function `othernode0':
nauty.c:(.text+0x1812): undefined reference to `alloc_error'
nauty.c:(.text+0x18df): undefined reference to `doref'
nauty.c:(.text+0x1a5a): undefined reference to `maketargetcell'
nauty.c:(.text+0x1acb): undefined reference to `maketargetcell'
nauty.c:(.text+0x1d50): undefined reference to `fmperm'
nauty.c:(.text+0x1d9f): undefined reference to `writeperm'
nauty.c:(.text+0x1dc0): undefined reference to `orbjoin'
nauty.c:(.text+0x1e6e): undefined reference to `fmperm'
nauty.c:(.text+0x1ea5): undefined reference to `orbjoin'
nauty.c:(.text+0x1f9a): undefined reference to `fmptn'
nauty.c:(.text+0x2025): undefined reference to `writeperm'
nauty.c:(.text+0x20e5): undefined reference to `shortprune'
nauty.c:(.text+0x2131): undefined reference to `nextelement'
nauty.c:(.text+0x2184): undefined reference to `breakout'
nauty.c:(.text+0x2202): undefined reference to `shortprune'
nauty.c:(.text+0x2239): undefined reference to `longprune'
nauty.c:(.text+0x22cb): undefined reference to `nextelement'
cc: error: linker command failed with exit code 1 (use -v to see invocation)
*** Error code 1
Stop.
make: stopped in /wrkdirs/usr/ports/math/nauty/work/nauty24r2
*** Error code 1
Stop.
make: stopped in /usr/ports/math/nauty
===> Cleaning for nauty-2.4r2
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