Bioinformatic app can't find JVM

KAYVEN RIESE kayve at sfsu.edu
Sat Mar 1 23:18:29 UTC 2008


This website:

http://www.fruitfly.org/annot/apollo/install.html

has an installation script called apolloinst.bin
with instructions to install as seen in command
line clip that includes BSD info and my personal
"error" diagnostic showing java is there:

[::clip::]

kv_bsd#sh ./apolloinst.bin
Preparing to install...
Extracting the installation resources from the installer archive...
Configuring the installer for this system's environment...
No Java virtual machine could be found from your PATH
environment variable.  You must install a VM prior to
running this program.
kv_bsd#echo $PATH
/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/usr/X11R6/bin:/root/bin
kv_bsd#cp apolloinst.bin /usr/home/kayve
kv_bsd#
kv_bsd#uname -a
FreeBSD kv_bsd 6.2-RELEASE FreeBSD 6.2-RELEASE #0: Fri Jan 12 10:40:27 UTC 
2007     root at dessler.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC  i386
kv_bsd#
[kayve at kv_bsd ~]$ java sdf
Exception in thread "main" java.lang.NoClassDefFoundError: sdf
[kayve at kv_bsd ~]$

[::end clip::]

I have already tried adding


JAVA_HOME="/usr/local/bin/java"

to the apolloinst.bin file with no results.

Thank you for your help.

*----------------------------------------------------------*
   Kayven Riese, BSCS, MS (Physiology and Biophysics)
   (415) 902 5513 cellular
   http://kayve.net
   Webmaster http://ChessYoga.org
*----------------------------------------------------------*


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