git: c085af1e8147 - main - biology/py-pywgsim: Modified wgsim genomic data simulator

[Jason W. Bacon]

The branch main has been updated by jwb:

URL: https://cgit.FreeBSD.org/ports/commit/?id=c085af1e81472458f64d957aab5e9a9e0580d8ca

commit c085af1e81472458f64d957aab5e9a9e0580d8ca
Author:     Jason W. Bacon <jwb at FreeBSD.org>
AuthorDate: 2021-09-06 12:55:49 +0000
Commit:     Jason W. Bacon <jwb at FreeBSD.org>
CommitDate: 2021-09-06 12:55:49 +0000

    biology/py-pywgsim: Modified wgsim genomic data simulator
    
    pywgsim is a modified version of the wgsim short read simulator.  The
    code for wgsim has been modified to allow visualizing the simulated
    mutations as a GFF file.
---
 biology/Makefile             |  1 +
 biology/py-pywgsim/Makefile  | 17 +++++++++++++++++
 biology/py-pywgsim/distinfo  |  3 +++
 biology/py-pywgsim/pkg-descr |  5 +++++
 4 files changed, 26 insertions(+)

diff --git a/biology/Makefile b/biology/Makefile
index 34d07d7a77a8..f97c311da9fe 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -156,6 +156,7 @@
     SUBDIR += py-pyfaidx
     SUBDIR += py-pysam
     SUBDIR += py-python-libsbml
+    SUBDIR += py-pywgsim
     SUBDIR += py-resdk
     SUBDIR += py-scikit-bio
     SUBDIR += py-xenaPython
diff --git a/biology/py-pywgsim/Makefile b/biology/py-pywgsim/Makefile
new file mode 100644
index 000000000000..353ec916cbf3
--- /dev/null
+++ b/biology/py-pywgsim/Makefile
@@ -0,0 +1,17 @@
+PORTNAME=	pywgsim
+DISTVERSION=	0.5.2
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	jwb at FreeBSD.org
+COMMENT=	Modified wgsim genomic data simulator
+
+LICENSE=	MIT
+
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}plac>=0:devel/py-plac@${PY_FLAVOR}
+
+USES=		python
+USE_PYTHON=	autoplist distutils
+
+.include <bsd.port.mk>
diff --git a/biology/py-pywgsim/distinfo b/biology/py-pywgsim/distinfo
new file mode 100644
index 000000000000..a139ccb217c0
--- /dev/null
+++ b/biology/py-pywgsim/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1630888272
+SHA256 (pywgsim-0.5.2.tar.gz) = b6726be21629bd1cda12592b536dcd62d250fc4872e47cbcc54066e8a6e8f709
+SIZE (pywgsim-0.5.2.tar.gz) = 81724
diff --git a/biology/py-pywgsim/pkg-descr b/biology/py-pywgsim/pkg-descr
new file mode 100644
index 000000000000..7853be44bcd9
--- /dev/null
+++ b/biology/py-pywgsim/pkg-descr
@@ -0,0 +1,5 @@
+pywgsim is a modified version of the wgsim short read simulator.  The
+code for wgsim has been modified to allow visualizing the simulated
+mutations as a GFF file.
+
+WWW: https://pypi.python.org/pypi/pywgsim