git: ff36c7fcf8e7 - main - science/code_saturne: upgrade to 7.0

Thierry Thomas thierry at FreeBSD.org
Fri Jun 18 15:56:49 UTC 2021 

The branch main has been updated by thierry:

URL: https://cgit.FreeBSD.org/ports/commit/?id=ff36c7fcf8e72094f906697a09ecaf8ac6b949a9

commit ff36c7fcf8e72094f906697a09ecaf8ac6b949a9
Author:     Thierry Thomas <thierry at FreeBSD.org>
AuthorDate: 2021-06-18 12:48:19 +0000
Commit:     Thierry Thomas <thierry at FreeBSD.org>
CommitDate: 2021-06-18 15:56:36 +0000

    science/code_saturne: upgrade to 7.0
    
    Changelog at <https://github.com/code-saturne/code_saturne/blob/v7.0/NEWS.md>.
---
 science/code_saturne/Makefile  |  30 ++-
 science/code_saturne/distinfo  |   6 +-
 science/code_saturne/pkg-plist | 524 ++++++++++++++++++++++++-----------------
 3 files changed, 327 insertions(+), 233 deletions(-)

diff --git a/science/code_saturne/Makefile b/science/code_saturne/Makefile
index 206e8b15fabb..baa1671fa2c2 100644
--- a/science/code_saturne/Makefile
+++ b/science/code_saturne/Makefile
@@ -1,8 +1,7 @@
 # Created by: thierry at pompo.net
 
 PORTNAME=	code_saturne
-PORTVERSION=	6.1.3
-PORTREVISION=	2
+PORTVERSION=	7.0.0
 DISTVERSIONPREFIX=	v
 CATEGORIES=	science parallel
 
@@ -26,10 +25,10 @@ USE_GITHUB=	yes
 GH_ACCOUNT=	code-saturne
 
 USES=		autoreconf bison compiler:c11 fortran gettext gnome gmake \
-		iconv libtool pyqt:5 python:3.7+ shebangfix
-
+		iconv localbase libtool pyqt:5 python:3.7+ shebangfix xorg
 USE_GNOME=	libxml2
 USE_PYQT=	core gui sip widgets xml_build
+USE_XORG=	x11
 SHEBANG_FILES=	install_saturne.py tests/unittests.py bin/*.py build-aux/*.py
 CFLAGS+=	-D__XSI_VISIBLE
 CPPFLAGS+=	-I${LOCALBASE}/include -I${LOCALBASE}/include/libxml2
@@ -43,14 +42,16 @@ BINARY_ALIAS=	python=${PYTHON_CMD} \
 		pyrcc5=pyrcc5-${PYTHON_VER} \
 		pyuic5=pyuic5-${PYTHON_VER}
 
-OPTIONS_DEFINE=		DOCS EXAMPLES BATCH BLAS MPICH SCOTCH
-OPTIONS_DEFAULT=	BATCH BLAS MPICH SCOTCH METIS
+OPTIONS_DEFINE=		DOCS EXAMPLES BATCH BLAS MPICH PETSC SCOTCH
+OPTIONS_DEFAULT=	BATCH BLAS METIS MPICH PETSC SCOTCH
 OPTIONS_RADIO=		METIS
 OPTIONS_RADIO_METIS=	METIS PARMETIS
-BLAS_DESC=		Support of OpenBLAS
+BLAS_DESC=		Support of BLAS
 BLAS_USES=		blaslapack
-BLAS_CONFIGURE_ON=	--with-blas=yes --with-blas-lib=${LOCALBASE}/lib --with-blas-libs=-lopenblas
-BLAS_LIB_DEPENDS=	libopenblas.so:math/openblas
+BLAS_CONFIGURE_ON=	--with-blas=yes --with-blas-type=BLAS	\
+			--with-blas-include=${LOCALBASE}/include/cblas	\
+			--with-blas-lib=${LOCALBASE}/lib
+BLAS_LIB_DEPENDS=	libcblas.so:math/cblas
 BATCH_DESC=		Use Torque to submit batches
 BATCH_RUN_DEPENDS=	pbs-config:sysutils/torque
 MPICH_USES=		mpi
@@ -60,11 +61,19 @@ MPICH_CONFIGURE_WITH=	mpi
 METIS_DESC=		Support of METIS
 METIS_LIB_DEPENDS=	libmetis.so:math/metis
 METIS_CONFIGURE_ON=	--with-metis-include="${LOCALBASE}/include"
+# MUMPS in port is not compatible ATM
+#MUMPS_DESC=		Support of MUMPS
+#MUMPS_LIB_DEPENDS=	libsmumps.so:math/mumps
+#MUMPS_CONFIGURE_ON=	--with-mumps="${LOCALBASE}"
+#MUMPS_CONFIGURE_ENV=	MUMPS_LIBS="-lmpiseq -llapack"
 PARMETIS_DESC=		Support of ParMETIS
 PARMETIS_LIB_DEPENDS=	libparmetis.so:math/parmetis
 PARMETIS_CONFIGURE_ON=	--with-metis-include="${LOCALBASE}/include/parmetis"	\
 			--with-metis-lib="${LOCALBASE}/lib/parmetis"
 PARMETIS_CONFIGURE_ENV=	LIBS=-lexecinfo
+PETSC_DESC=		Support of PETSc
+PETSC_LIB_DEPENDS=	libpetsc.so:science/PETSc
+PETSC_CONFIGURE_ON=	--with-petsc="${LOCALBASE}"
 SCOTCH_DESC=		Support of Scotch
 SCOTCH_LIB_DEPENDS=	libscotch.so:cad/scotch
 SCOTCH_CONFIGURE_ON=	--with-scotch-include="${LOCALBASE}/include"
@@ -98,9 +107,6 @@ DOCS=		AUTHORS ChangeLog README
 .endif
 
 pre-configure:
-	${FLEX} -o ${WRKSRC}/src/mei/mei_scanner.c ${WRKSRC}/src/mei/mei_scanner.l
-	${LOCALBASE}/bin/bison --defines=${WRKSRC}/src/mei/mei_parser.h	\
-		-o ${WRKSRC}/src/mei/mei_parser.c ${WRKSRC}/src/mei/mei_parser.y
 	${REINPLACE_CMD} -e 's|/usr/bin/env python|${PYTHON_CMD}|'	\
 		${WRKSRC}/Makefile.am
 
diff --git a/science/code_saturne/distinfo b/science/code_saturne/distinfo
index c5c859a9eca8..2e729cd10412 100644
--- a/science/code_saturne/distinfo
+++ b/science/code_saturne/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1608743108
-SHA256 (code-saturne-code_saturne-v6.1.3_GH0.tar.gz) = fcbd93ad3059ee256f59ce552e0ab2f7d894a84374cdae1a743574f4989eda0f
-SIZE (code-saturne-code_saturne-v6.1.3_GH0.tar.gz) = 19593748
+TIMESTAMP = 1623862188
+SHA256 (code-saturne-code_saturne-v7.0.0_GH0.tar.gz) = aa5a1172cb3db6b75428792a328e1eca98a73acc336c5b568df76ecf1f5025e0
+SIZE (code-saturne-code_saturne-v7.0.0_GH0.tar.gz) = 17151962
diff --git a/science/code_saturne/pkg-plist b/science/code_saturne/pkg-plist
index 0740365c181e..84d91fa5b2f3 100644
--- a/science/code_saturne/pkg-plist
+++ b/science/code_saturne/pkg-plist
@@ -27,6 +27,7 @@ include/code_saturne/cs_air_props.h
 include/code_saturne/cs_ale.h
 include/code_saturne/cs_alge_headers.h
 include/code_saturne/cs_all_to_all.h
+include/code_saturne/cs_array.h
 include/code_saturne/cs_array_reduce.h
 include/code_saturne/cs_assert.h
 include/code_saturne/cs_ast_coupling.h
@@ -36,6 +37,8 @@ include/code_saturne/cs_atmo.h
 include/code_saturne/cs_atmo_aerosol.h
 include/code_saturne/cs_atmo_aerosol_ssh.h
 include/code_saturne/cs_atmo_headers.h
+include/code_saturne/cs_atmo_profile_std.h
+include/code_saturne/cs_atprke.h
 include/code_saturne/cs_bad_cells_regularisation.h
 include/code_saturne/cs_balance.h
 include/code_saturne/cs_balance_by_zone.h
@@ -63,10 +66,12 @@ include/code_saturne/cs_cdo_headers.h
 include/code_saturne/cs_cdo_local.h
 include/code_saturne/cs_cdo_main.h
 include/code_saturne/cs_cdo_quantities.h
-include/code_saturne/cs_cdo_time.h
+include/code_saturne/cs_cdo_turbulence.h
+include/code_saturne/cs_cdoeb_priv.h
 include/code_saturne/cs_cdoeb_vecteq.h
 include/code_saturne/cs_cdofb_ac.h
 include/code_saturne/cs_cdofb_monolithic.h
+include/code_saturne/cs_cdofb_monolithic_priv.h
 include/code_saturne/cs_cdofb_monolithic_sles.h
 include/code_saturne/cs_cdofb_navsto.h
 include/code_saturne/cs_cdofb_predco.h
@@ -82,7 +87,10 @@ include/code_saturne/cs_cf_bindings.mod
 include/code_saturne/cs_cf_model.h
 include/code_saturne/cs_cf_thermo.h
 include/code_saturne/cs_cfbl_headers.h
+include/code_saturne/cs_clip_ke.h
 include/code_saturne/cs_coal_incl.mod
+include/code_saturne/cs_cogz_headers.h
+include/code_saturne/cs_combustion_gas.h
 include/code_saturne/cs_combustion_model.h
 include/code_saturne/cs_config.h
 include/code_saturne/cs_control.h
@@ -137,7 +145,6 @@ include/code_saturne/cs_gui_particles.h
 include/code_saturne/cs_gui_radiative_transfer.h
 include/code_saturne/cs_gui_specific_physics.h
 include/code_saturne/cs_gui_util.h
-include/code_saturne/cs_gui_variables.h
 include/code_saturne/cs_gwf.h
 include/code_saturne/cs_gwf_parameters.h
 include/code_saturne/cs_gwf_physical_properties.h
@@ -155,10 +162,13 @@ include/code_saturne/cs_hho_scaleq.h
 include/code_saturne/cs_hho_stokes.h
 include/code_saturne/cs_hho_vecteq.h
 include/code_saturne/cs_hodge.h
+include/code_saturne/cs_ht_convert.h
 include/code_saturne/cs_interface.h
 include/code_saturne/cs_internal_coupling.h
 include/code_saturne/cs_interpolate.h
+include/code_saturne/cs_intprf.h
 include/code_saturne/cs_io.h
+include/code_saturne/cs_iter_algo.h
 include/code_saturne/cs_join.h
 include/code_saturne/cs_join_intersect.h
 include/code_saturne/cs_join_merge.h
@@ -211,6 +221,7 @@ include/code_saturne/cs_log.h
 include/code_saturne/cs_log_iteration.h
 include/code_saturne/cs_log_setup.h
 include/code_saturne/cs_map.h
+include/code_saturne/cs_mass_source_terms.h
 include/code_saturne/cs_math.h
 include/code_saturne/cs_matrix.h
 include/code_saturne/cs_matrix_assembler.h
@@ -222,8 +233,8 @@ include/code_saturne/cs_matrix_tuning.h
 include/code_saturne/cs_matrix_util.h
 include/code_saturne/cs_maxwell.h
 include/code_saturne/cs_measures_util.h
-include/code_saturne/cs_medcoupling_intersector.hxx
-include/code_saturne/cs_medcoupling_remapper.hxx
+include/code_saturne/cs_medcoupling_intersector.h
+include/code_saturne/cs_medcoupling_remapper.h
 include/code_saturne/cs_medcoupling_utils.hxx
 include/code_saturne/cs_mesh.h
 include/code_saturne/cs_mesh_adjacencies.h
@@ -231,6 +242,7 @@ include/code_saturne/cs_mesh_bad_cells.h
 include/code_saturne/cs_mesh_boundary.h
 include/code_saturne/cs_mesh_boundary_layer.h
 include/code_saturne/cs_mesh_builder.h
+include/code_saturne/cs_mesh_cartesian.h
 include/code_saturne/cs_mesh_coarsen.h
 include/code_saturne/cs_mesh_coherency.h
 include/code_saturne/cs_mesh_connect.h
@@ -263,10 +275,11 @@ include/code_saturne/cs_nz_tagmr.mod
 include/code_saturne/cs_opts.h
 include/code_saturne/cs_order.h
 include/code_saturne/cs_parall.h
-include/code_saturne/cs_param.h
 include/code_saturne/cs_param_cdo.h
-include/code_saturne/cs_paramedmem_coupling.hxx
-include/code_saturne/cs_paramedmem_remapper.hxx
+include/code_saturne/cs_param_sles.h
+include/code_saturne/cs_param_types.h
+include/code_saturne/cs_paramedmem_coupling.h
+include/code_saturne/cs_paramedmem_remapper.h
 include/code_saturne/cs_parameters.h
 include/code_saturne/cs_parameters_check.h
 include/code_saturne/cs_part_to_block.h
@@ -275,6 +288,7 @@ include/code_saturne/cs_physical_constants.h
 include/code_saturne/cs_physical_model.h
 include/code_saturne/cs_physical_properties.h
 include/code_saturne/cs_porosity_from_scan.h
+include/code_saturne/cs_porous_model.h
 include/code_saturne/cs_post.h
 include/code_saturne/cs_post_default.h
 include/code_saturne/cs_post_util.h
@@ -310,6 +324,7 @@ include/code_saturne/cs_restart.h
 include/code_saturne/cs_restart_default.h
 include/code_saturne/cs_restart_map.h
 include/code_saturne/cs_rotation.h
+include/code_saturne/cs_runaway_check.h
 include/code_saturne/cs_sat_coupling.h
 include/code_saturne/cs_scheme_geometry.h
 include/code_saturne/cs_sdm.h
@@ -320,12 +335,13 @@ include/code_saturne/cs_sles_default.h
 include/code_saturne/cs_sles_it.h
 include/code_saturne/cs_sles_it_priv.h
 include/code_saturne/cs_sles_pc.h
+include/code_saturne/cs_sles_petsc.h
 include/code_saturne/cs_solidification.h
 include/code_saturne/cs_sort.h
 include/code_saturne/cs_sort_partition.h
 include/code_saturne/cs_source_term.h
 include/code_saturne/cs_static_condensation.h
-include/code_saturne/cs_stokes_model.h
+include/code_saturne/cs_stl.h
 include/code_saturne/cs_syr4_coupling.h
 include/code_saturne/cs_syr_coupling.h
 include/code_saturne/cs_system_info.h
@@ -333,6 +349,7 @@ include/code_saturne/cs_tagmr.mod
 include/code_saturne/cs_tagms.mod
 include/code_saturne/cs_thermal_model.h
 include/code_saturne/cs_thermal_system.h
+include/code_saturne/cs_time_control.h
 include/code_saturne/cs_time_moment.h
 include/code_saturne/cs_time_plot.h
 include/code_saturne/cs_time_step.h
@@ -342,9 +359,16 @@ include/code_saturne/cs_tree.h
 include/code_saturne/cs_tree_xml.h
 include/code_saturne/cs_turbomachinery.h
 include/code_saturne/cs_turbulence_bc.h
+include/code_saturne/cs_turbulence_headers.h
+include/code_saturne/cs_turbulence_inflow.h
+include/code_saturne/cs_turbulence_ke.h
+include/code_saturne/cs_turbulence_kw.h
 include/code_saturne/cs_turbulence_model.h
+include/code_saturne/cs_turbulence_rotation.h
+include/code_saturne/cs_velocity_pressure.h
 include/code_saturne/cs_version.h
 include/code_saturne/cs_vof.h
+include/code_saturne/cs_volume_mass_injection.h
 include/code_saturne/cs_volume_zone.h
 include/code_saturne/cs_wall_functions.h
 include/code_saturne/cs_walldistance.h
@@ -381,10 +405,6 @@ include/code_saturne/fvm_triangulate.h
 include/code_saturne/fvm_writer.h
 include/code_saturne/ihmpre.mod
 include/code_saturne/lagran.mod
-include/code_saturne/mei_evaluate.h
-include/code_saturne/mei_hash_table.h
-include/code_saturne/mei_node.h
-include/code_saturne/mei_parser.h
 include/code_saturne/mesh.mod
 include/code_saturne/numvar.mod
 include/code_saturne/optcal.mod
@@ -404,17 +424,17 @@ include/code_saturne/spefun.mod
 include/code_saturne/sshaerosol.mod
 include/code_saturne/turbomachinery.mod
 include/code_saturne/vof.mod
-include/code_saturne/vorinc.mod
 include/ple_config.h
 include/ple_coupling.h
 include/ple_defs.h
 include/ple_locator.h
-lib/libcs_solver-6.1.so
+lib/code_saturne_build.cfg
+lib/libcs_solver-7.0.so
 lib/libcs_solver.so
 lib/libple.so
 lib/libple.so.2
 lib/libple.so.2.0.0
-lib/libsaturne-6.1.so
+lib/libsaturne-7.0.so
 lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/BrowserForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/BrowserView.py
@@ -422,10 +442,10 @@ lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/CommandMgrDialogView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/CommandMgrLinesDisplayedDialogForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/CompletionTextEditor.py
-%%PYTHON_SITELIBDIR%%/code_saturne/Base/MONO-bulle-HD.png
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/MainForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/MainView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/NewCaseDialogForm.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Base/QCouplingEditorView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/QFileEditor.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/QtCase.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/QtCore.py
@@ -452,6 +472,8 @@ lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/MainView.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/NewCaseDialogForm.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/NewCaseDialogForm.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/QCouplingEditorView.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/QCouplingEditorView.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/QFileEditor.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/QFileEditor.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/QtCase.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
@@ -470,7 +492,7 @@ lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/resource_base_rc.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/__pycache__/resource_base_rc.cpython-%%PYTHON_SUFFIX%%.pyc
-%%PYTHON_SITELIBDIR%%/code_saturne/Base/logoneptune.png
+%%PYTHON_SITELIBDIR%%/code_saturne/Base/logo_salome_cfd.png
 %%PYTHON_SITELIBDIR%%/code_saturne/Base/resource_base_rc.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/AnalysisFeaturesForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/AnalysisFeaturesView.py
@@ -537,6 +559,8 @@ lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/BoundaryConditionsWallRadiativeTransferForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/BoundaryConditionsWallRadiativeTransferView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/BoundaryConditionsWallView.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/BoundaryNatureForm.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/BoundaryNatureView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/CathareCouplingForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/CathareCouplingView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/CoalCombustionForm.py
@@ -544,6 +568,8 @@ lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/CompressibleForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/ConjugateHeatTransferForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/ConjugateHeatTransferView.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/CouplingParametersForm.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/CouplingParametersView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/DefineUserScalarsForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/DefineUserScalarsView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/DropletCondensationEvaporation.py
@@ -582,9 +608,9 @@ lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/InterfacialEnthalpyView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/InterfacialForces.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/InterfacialForcesView.py
-%%PYTHON_SITELIBDIR%%/code_saturne/Pages/LagrangianAdvancedOptionsDialogForm.py
-%%PYTHON_SITELIBDIR%%/code_saturne/Pages/LagrangianBoundariesForm.py
-%%PYTHON_SITELIBDIR%%/code_saturne/Pages/LagrangianBoundariesView.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/InternalCouplingView.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/LagrangianBoundaryForm.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/LagrangianBoundaryView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/LagrangianForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/LagrangianOutputForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/LagrangianOutputView.py
@@ -602,6 +628,10 @@ lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/MeshQualityCriteriaLogDialogForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/MobileMeshForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/MobileMeshView.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/NeptuneThermodynamics.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/NeptuneThermodynamicsView.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/NeptuneWallTransferForm.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/NeptuneWallTransferView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/NonCondensableView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/Noncondensable.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/NotebookForm.py
@@ -633,9 +663,8 @@ lib/libsaturne.so
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/PreprocessingView.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/ProfilesForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/ProfilesView.py
+%%PYTHON_SITELIBDIR%%/code_saturne/Pages/QMegEditorForm.py
 %%PYTHON_SITELIBDIR%%/code_saturne/Pages/QMegEditorView.py
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+%%DATADIR%%/user_sources/REFERENCE/cs_user_postprocess.c
+%%DATADIR%%/user_sources/REFERENCE/cs_user_radiative_transfer.c
+%%DATADIR%%/user_sources/REFERENCE/cs_user_radiative_transfer_bcs.c
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+%%DATADIR%%/user_sources/REFERENCE/cs_user_turbomachinery.c
+%%DATADIR%%/user_sources/REFERENCE/cs_user_zones.c
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 %%PORTDOCS%%%%DOCSDIR%%/AUTHORS
 %%PORTDOCS%%%%DOCSDIR%%/ChangeLog
 %%PORTDOCS%%%%DOCSDIR%%/README
-%%PORTDOCS%%%%DOCSDIR%%/developer.pdf
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 %%PORTDOCS%%%%DOCSDIR%%/refcard.pdf
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 %%PORTDOCS%%%%DOCSDIR%%/theory.pdf
 %%PORTDOCS%%%%DOCSDIR%%/user.pdf
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/1-simple_junction/case1/setup.xml
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/1-simple_junction/mesh/downcomer.des
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/1-simple_junction/mesh/downcomer.med
+%%PORTEXAMPLES%%%%EXAMPLESDIR%%/1-simple_junction/mesh/mesh_input.csm
 %%PORTEXAMPLES%%%%EXAMPLESDIR%%/2-full_domain/case1/cs_user_parameters.c
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