git: 63e653adaa74 - main - math/gsl: update to 2.7
Tobias C. Berner
tcberner at FreeBSD.org
Wed Jun 16 19:32:02 UTC 2021
The branch main has been updated by tcberner:
URL: https://cgit.FreeBSD.org/ports/commit/?id=63e653adaa7493aa98f17f9fbc834c0aed7e096e
commit 63e653adaa7493aa98f17f9fbc834c0aed7e096e
Author: Tobias C. Berner <tcberner at FreeBSD.org>
AuthorDate: 2021-06-05 07:30:51 +0000
Commit: Tobias C. Berner <tcberner at FreeBSD.org>
CommitDate: 2021-06-16 19:31:27 +0000
math/gsl: update to 2.7
From [1]
* What is new in gsl-2.7:
* fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com)
* fixed bug #60335 (spmatrix test failure, J. Lamb)
* fixed bug #36577
* clarified documentation on interpolation accelerators (V. Krishnan)
* fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M. Sitte)
* fixed doc bug #59758
* fixed bug #58202 (rstat median for n=5)
* added support for native C complex number types in gsl_complex
when using a C11 compiler
* upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6
* updated exponential fitting example for nonlinear least squares
* added banded LU decomposition and solver (gsl_linalg_LU_band)
* New functions added to the library:
- gsl_matrix_norm1
- gsl_spmatrix_norm1
- gsl_matrix_complex_conjtrans_memcpy
- gsl_linalg_QL: decomp, unpack
- gsl_linalg_complex_QR_* (thanks to Christian Krueger)
- gsl_vector_sum
- gsl_matrix_scale_rows
- gsl_matrix_scale_columns
- gsl_multilarge_linear_matrix_ptr
- gsl_multilarge_linear_rhs_ptr
- gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense)
- gsl_spmatrix_dense_sub
- gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply
- gsl_linalg_QR_UD: decomp, lssolve
- gsl_linalg_QR_UU: decomp, lssolve, QTvec
- gsl_linalg_QR_UZ: decomp
- gsl_multifit_linear_lcurvature
- gsl_spline2d_eval_extrap
* bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy at pm.me)
* made gsl_sf_legendre_array_index() inline and documented
- gsl_sf_legendre_nlm()
[1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS
PR: 256423
Exp-run by: antoine
---
astro/astrometry/Makefile | 1 +
astro/gnuastro/Makefile | 1 +
astro/siril/Makefile | 2 +-
astro/stellarsolver/Makefile | 1 +
audio/snd/Makefile | 1 +
benchmarks/flowgrind/Makefile | 1 +
benchmarks/sipp/Makefile | 2 +-
biology/bcftools/Makefile | 1 +
biology/gemma/Makefile | 1 +
biology/viennarna/Makefile | 1 +
cad/graywolf/Makefile | 2 +-
comms/gnuradio/Makefile | 2 +-
devel/indi/Makefile | 1 +
editors/calligra/Makefile | 2 +-
graphics/enblend/Makefile | 2 +-
graphics/inkscape/Makefile | 2 +-
graphics/ipe/Makefile | 1 +
graphics/krita/Makefile | 2 +-
graphics/luminance-qt5/Makefile | 2 +-
graphics/mandelbulber/Makefile | 1 +
graphics/nip2/Makefile | 2 +-
graphics/pfstools/Makefile | 2 +-
graphics/qgis-ltr/Makefile | 1 +
graphics/qgis/Makefile | 2 +-
lang/algol68g/Makefile | 2 +-
lang/newlisp/Makefile | 2 +-
mail/bogofilter/Makefile | 2 +-
math/PDL/Makefile | 2 +-
math/R-cran-gsl/Makefile | 1 +
math/asymptote/Makefile | 2 +-
math/deal.ii/Makefile | 1 +
math/dieharder/Makefile | 2 +-
math/freefem++/Makefile | 2 +-
math/giacxcas/Makefile | 2 +-
math/gsl/Makefile | 2 +-
math/gsl/distinfo | 6 +++---
math/gsl/pkg-plist | 3 ++-
math/labplot/Makefile | 2 +-
math/mathgl/Makefile | 2 +-
math/ocamlgsl/Makefile | 2 +-
math/octave-forge-gsl/Makefile | 2 +-
math/oleo/Makefile | 2 +-
math/orpie/Makefile | 2 +-
math/p5-Math-GSL/Makefile | 1 +
math/p5-Math-GSL/files/patch-inc-GSLBuilder.pm | 6 +++---
math/p5-Math-GSL/files/patch-inc_Ver2Func.pm | 11 +++++++++++
math/py-cvxopt/Makefile | 1 +
math/py-pygsl/Makefile | 2 +-
math/py-pygslodeiv2/Makefile | 1 +
math/rubygem-rb-gsl/Makefile | 2 +-
math/sage/Makefile | 2 +-
misc/visp/Makefile | 1 +
net/ns3/Makefile | 1 +
science/afni/Makefile | 1 +
science/antioch/Makefile | 2 +-
science/dakota/Makefile | 2 +-
science/erkale/Makefile | 1 +
science/fisicalab/Makefile | 2 +-
science/getdp/Makefile | 1 +
science/gnudatalanguage/Makefile | 2 +-
science/jdftx/Makefile | 1 +
science/kst2/Makefile | 1 +
science/nest/Makefile | 1 +
science/octopus/Makefile | 1 +
science/scidavis/Makefile | 2 +-
science/step/Makefile | 1 +
66 files changed, 81 insertions(+), 42 deletions(-)
diff --git a/astro/astrometry/Makefile b/astro/astrometry/Makefile
index 30553487c42a..182738c1f8f7 100644
--- a/astro/astrometry/Makefile
+++ b/astro/astrometry/Makefile
@@ -2,6 +2,7 @@
PORTNAME= astrometry
PORTVERSION= 0.85
+PORTREVISION= 1
CATEGORIES= astro
MASTER_SITES= http://astrometry.net/downloads/
DISTNAME= ${PORTNAME}.net-${PORTVERSION}
diff --git a/astro/gnuastro/Makefile b/astro/gnuastro/Makefile
index 8a4de5456dff..cb759943ed23 100644
--- a/astro/gnuastro/Makefile
+++ b/astro/gnuastro/Makefile
@@ -2,6 +2,7 @@
PORTNAME= gnuastro
PORTVERSION= 0.15
+PORTREVISION= 1
CATEGORIES= astro
MASTER_SITES= GNU
diff --git a/astro/siril/Makefile b/astro/siril/Makefile
index 2b04309c29dc..63ef8af94453 100644
--- a/astro/siril/Makefile
+++ b/astro/siril/Makefile
@@ -1,6 +1,6 @@
PORTNAME= siril
DISTVERSION= 0.99.8.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= astro graphics
MASTER_SITES= https://free-astro.org/download/
diff --git a/astro/stellarsolver/Makefile b/astro/stellarsolver/Makefile
index 492f1313eedf..f73d693398d7 100644
--- a/astro/stellarsolver/Makefile
+++ b/astro/stellarsolver/Makefile
@@ -1,5 +1,6 @@
PORTNAME= stellarsolver
DISTVERSION= 1.5
+PORTREVISION= 1
CATEGORIES= astro
MAINTAINER= acm at FreeBSD.org
diff --git a/audio/snd/Makefile b/audio/snd/Makefile
index aa563844702e..c954f1c4838b 100644
--- a/audio/snd/Makefile
+++ b/audio/snd/Makefile
@@ -2,6 +2,7 @@
PORTNAME= snd
PORTVERSION= 21.2
+PORTREVISION= 1
CATEGORIES= audio
MASTER_SITES= https://ccrma.stanford.edu/software/snd/ \
SF
diff --git a/benchmarks/flowgrind/Makefile b/benchmarks/flowgrind/Makefile
index 7803a8027d9f..dd22ca52e20e 100644
--- a/benchmarks/flowgrind/Makefile
+++ b/benchmarks/flowgrind/Makefile
@@ -3,6 +3,7 @@
PORTNAME= flowgrind
PORTVERSION= 0.8.2
DISTVERSIONPREFIX= ${PORTNAME}-
+PORTREVISION= 1
CATEGORIES= benchmarks
MAINTAINER= dbaio at FreeBSD.org
diff --git a/benchmarks/sipp/Makefile b/benchmarks/sipp/Makefile
index ea20d43dc69d..71c872068992 100644
--- a/benchmarks/sipp/Makefile
+++ b/benchmarks/sipp/Makefile
@@ -2,7 +2,7 @@
PORTNAME= sipp
PORTVERSION= 3.5.1
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= benchmarks net
MASTER_SITES= https://github.com/${PORTNAME}/${PORTNAME}/releases/download/v${PORTVERSION}/
diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile
index 2f5d20ccc60e..15d56d063ec0 100644
--- a/biology/bcftools/Makefile
+++ b/biology/bcftools/Makefile
@@ -2,6 +2,7 @@
PORTNAME= bcftools
PORTVERSION= 1.12
+PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb at FreeBSD.org
diff --git a/biology/gemma/Makefile b/biology/gemma/Makefile
index a2c671aaed3f..1a4909a1bbf9 100644
--- a/biology/gemma/Makefile
+++ b/biology/gemma/Makefile
@@ -1,5 +1,6 @@
PORTNAME= gemma
DISTVERSION= 0.98.3
+PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb at FreeBSD.org
diff --git a/biology/viennarna/Makefile b/biology/viennarna/Makefile
index bc23c364f501..7ae66c934b10 100644
--- a/biology/viennarna/Makefile
+++ b/biology/viennarna/Makefile
@@ -1,5 +1,6 @@
PORTNAME= viennarna
DISTVERSION= 2.4.18
+PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/
DISTNAME= ViennaRNA-${DISTVERSION}
diff --git a/cad/graywolf/Makefile b/cad/graywolf/Makefile
index a2fa7d1d592c..3b14073e8a67 100644
--- a/cad/graywolf/Makefile
+++ b/cad/graywolf/Makefile
@@ -1,7 +1,7 @@
PORTNAME= graywolf
DISTVERSION= 0.1.6-4
DISTVERSIONSUFFIX= -gf47937b
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= cad
PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/
diff --git a/comms/gnuradio/Makefile b/comms/gnuradio/Makefile
index 5ed397e140f4..c1867f0ec234 100644
--- a/comms/gnuradio/Makefile
+++ b/comms/gnuradio/Makefile
@@ -1,7 +1,7 @@
PORTNAME= gnuradio
DISTVERSIONPREFIX= v
DISTVERSION= 3.8.1.0
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= comms astro hamradio
MAINTAINER= hamradio at FreeBSD.org
diff --git a/devel/indi/Makefile b/devel/indi/Makefile
index 2f25bb057e57..f9de21782a0b 100644
--- a/devel/indi/Makefile
+++ b/devel/indi/Makefile
@@ -1,6 +1,7 @@
PORTNAME= indi
DISTVERSIONPREFIX= v
DISTVERSION= 1.9.0
+PORTREVISION= 1
CATEGORIES= devel
MAINTAINER= acm at FreeBSD.org
diff --git a/editors/calligra/Makefile b/editors/calligra/Makefile
index 613784f13f4f..9194b4aa8c5a 100644
--- a/editors/calligra/Makefile
+++ b/editors/calligra/Makefile
@@ -1,6 +1,6 @@
PORTNAME= calligra
DISTVERSION= 3.2.1
-PORTREVISION= 21
+PORTREVISION= 22
CATEGORIES= editors kde
MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}
DIST_SUBDIR= KDE/${PORTNAME}
diff --git a/graphics/enblend/Makefile b/graphics/enblend/Makefile
index 06e8b38f78f7..e770b7d93780 100644
--- a/graphics/enblend/Makefile
+++ b/graphics/enblend/Makefile
@@ -2,7 +2,7 @@
PORTNAME= enblend
PORTVERSION= 4.2
-PORTREVISION= 15
+PORTREVISION= 16
CATEGORIES= graphics
MASTER_SITES= SF/enblend/enblend-enfuse/enblend-enfuse-${PORTVERSION}
DISTNAME= enblend-enfuse-${PORTVERSION}
diff --git a/graphics/inkscape/Makefile b/graphics/inkscape/Makefile
index ef8428fdcba2..3145565c750c 100644
--- a/graphics/inkscape/Makefile
+++ b/graphics/inkscape/Makefile
@@ -2,7 +2,7 @@
PORTNAME= inkscape
PORTVERSION= 1.0.2
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= graphics gnome
MASTER_SITES= https://media.inkscape.org/dl/resources/file/
diff --git a/graphics/ipe/Makefile b/graphics/ipe/Makefile
index 428f6efbf68c..a3f908e85617 100644
--- a/graphics/ipe/Makefile
+++ b/graphics/ipe/Makefile
@@ -3,6 +3,7 @@
PORTNAME= ipe
PORTVERSION= 7.2.23
DISTVERSIONSUFFIX= -src
+PORTREVISION= 1
CATEGORIES= graphics
MASTER_SITES= https://dl.bintray.com/otfried/generic/ipe/${PORTVERSION:R}/
diff --git a/graphics/krita/Makefile b/graphics/krita/Makefile
index 6c9a558cd887..803df1d2f8b8 100644
--- a/graphics/krita/Makefile
+++ b/graphics/krita/Makefile
@@ -1,6 +1,6 @@
PORTNAME= krita
DISTVERSION= 4.4.5
-PORTREVISION= 16
+PORTREVISION= 17
CATEGORIES= graphics kde
MASTER_SITES= KDE/stable/${PORTNAME}/${DISTVERSION}
DIST_SUBDIR= KDE/${PORTNAME}
diff --git a/graphics/luminance-qt5/Makefile b/graphics/luminance-qt5/Makefile
index 3fcc44064ff0..874814392fdc 100644
--- a/graphics/luminance-qt5/Makefile
+++ b/graphics/luminance-qt5/Makefile
@@ -2,7 +2,7 @@
PORTNAME= luminance-hdr
DISTVERSION= 2.6.1.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= graphics
MASTER_SITES= SF/qtpfsgui/luminance/${DISTVERSION}
diff --git a/graphics/mandelbulber/Makefile b/graphics/mandelbulber/Makefile
index 39686eba5d3c..8a540ab04785 100644
--- a/graphics/mandelbulber/Makefile
+++ b/graphics/mandelbulber/Makefile
@@ -1,5 +1,6 @@
PORTNAME= mandelbulber
PORTVERSION= 2.25
+PORTREVISION= 1
CATEGORIES= graphics
MAINTAINER= amdmi3 at FreeBSD.org
diff --git a/graphics/nip2/Makefile b/graphics/nip2/Makefile
index 862c12987145..cdff6eba4230 100644
--- a/graphics/nip2/Makefile
+++ b/graphics/nip2/Makefile
@@ -2,7 +2,7 @@
PORTNAME= nip2
PORTVERSION= 8.7.1
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= graphics
MASTER_SITES= https://github.com/libvips/${PORTNAME}/releases/download/v${PORTVERSION}/
diff --git a/graphics/pfstools/Makefile b/graphics/pfstools/Makefile
index 2f22f1385cf1..5be62bbbd092 100644
--- a/graphics/pfstools/Makefile
+++ b/graphics/pfstools/Makefile
@@ -2,7 +2,7 @@
PORTNAME= pfstools
DISTVERSION= 2.1.0
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= graphics
MASTER_SITES= SF
diff --git a/graphics/qgis-ltr/Makefile b/graphics/qgis-ltr/Makefile
index f5bd01c44cd2..50541b7914ed 100644
--- a/graphics/qgis-ltr/Makefile
+++ b/graphics/qgis-ltr/Makefile
@@ -3,6 +3,7 @@
PORTNAME= qgis
DISTVERSIONPREFIX= final-
DISTVERSION= 3_16_7
+PORTREVISION= 1
CATEGORIES= graphics geography
PKGNAMESUFFIX= -ltr
diff --git a/graphics/qgis/Makefile b/graphics/qgis/Makefile
index 34a16180f376..fd21b2776bd1 100644
--- a/graphics/qgis/Makefile
+++ b/graphics/qgis/Makefile
@@ -3,7 +3,7 @@
PORTNAME= qgis
DISTVERSIONPREFIX= final-
DISTVERSION= 3_18_3
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= graphics geography
PATCH_SITES= https://github.com/${GH_ACCOUNT}/${GH_PROJECT}/commit/
diff --git a/lang/algol68g/Makefile b/lang/algol68g/Makefile
index 918b0b5aa478..a18c18e8318e 100644
--- a/lang/algol68g/Makefile
+++ b/lang/algol68g/Makefile
@@ -1,6 +1,6 @@
PORTNAME= algol68g
PORTVERSION= 2.8.4
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= lang
MASTER_SITES= http://jmvdveer.home.xs4all.nl/
diff --git a/lang/newlisp/Makefile b/lang/newlisp/Makefile
index 9d8c25be47bf..239f58bc78e5 100644
--- a/lang/newlisp/Makefile
+++ b/lang/newlisp/Makefile
@@ -2,7 +2,7 @@
PORTNAME= newlisp
PORTVERSION= 10.7.5
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= lang
MASTER_SITES= http://www.newlisp.org/downloads/
diff --git a/mail/bogofilter/Makefile b/mail/bogofilter/Makefile
index 5d9dd44a59c1..d061385d5e87 100644
--- a/mail/bogofilter/Makefile
+++ b/mail/bogofilter/Makefile
@@ -2,7 +2,7 @@
PORTNAME= bogofilter
DISTVERSION= 1.2.5
-PORTREVISION?= 1
+PORTREVISION?= 2
CATEGORIES?= mail
MASTER_SITES= SF/bogofilter/bogofilter-stable/
diff --git a/math/PDL/Makefile b/math/PDL/Makefile
index d6ac0220bec4..bde5189a70ae 100644
--- a/math/PDL/Makefile
+++ b/math/PDL/Makefile
@@ -2,7 +2,7 @@
PORTNAME= PDL
PORTVERSION= 2.019
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= math perl5
MASTER_SITES= CPAN
diff --git a/math/R-cran-gsl/Makefile b/math/R-cran-gsl/Makefile
index c316aa2b9b02..cf111941a206 100644
--- a/math/R-cran-gsl/Makefile
+++ b/math/R-cran-gsl/Makefile
@@ -2,6 +2,7 @@
PORTNAME= gsl
DISTVERSION= 2.1-6
+PORTREVISION= 1
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/asymptote/Makefile b/math/asymptote/Makefile
index 74947c18085f..74186fb9f284 100644
--- a/math/asymptote/Makefile
+++ b/math/asymptote/Makefile
@@ -2,7 +2,7 @@
PORTNAME= asymptote
PORTVERSION= 2.67
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/${PORTVERSION}
DISTNAME= ${PORTNAME}-${PORTVERSION}.src
diff --git a/math/deal.ii/Makefile b/math/deal.ii/Makefile
index d906e24257fb..ed713db66719 100644
--- a/math/deal.ii/Makefile
+++ b/math/deal.ii/Makefile
@@ -1,6 +1,7 @@
PORTNAME= deal.II
DISTVERSIONPREFIX= v
DISTVERSION= 9.3.0
+PORTREVISION= 1
CATEGORIES= math
MAINTAINER= yuri at FreeBSD.org
diff --git a/math/dieharder/Makefile b/math/dieharder/Makefile
index 17150b7227a7..3b7397ed7804 100644
--- a/math/dieharder/Makefile
+++ b/math/dieharder/Makefile
@@ -2,7 +2,7 @@
PORTNAME= dieharder
PORTVERSION= 3.31.1
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= math
MASTER_SITES= http://www.phy.duke.edu/~rgb/General/dieharder/ LOCAL/bf
diff --git a/math/freefem++/Makefile b/math/freefem++/Makefile
index c3ff5f51ee6b..72cbebd168db 100644
--- a/math/freefem++/Makefile
+++ b/math/freefem++/Makefile
@@ -3,7 +3,7 @@
PORTNAME= freefem++
PORTVERSION= 4.6
DISTVERSIONPREFIX= v
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math science
MAINTAINER= kh at mogami.com
diff --git a/math/giacxcas/Makefile b/math/giacxcas/Makefile
index 274ca4ea5df9..3db4b3a6a1fe 100644
--- a/math/giacxcas/Makefile
+++ b/math/giacxcas/Makefile
@@ -2,7 +2,7 @@
PORTNAME= giacxcas
DISTVERSION= 1.6.0-7
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MASTER_SITES= http://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/stable/main/source/:giac \
http://cocoa.dima.unige.it/cocoalib/tgz/:cocoa \
diff --git a/math/gsl/Makefile b/math/gsl/Makefile
index 514de9ab92bd..722be7fd29b6 100644
--- a/math/gsl/Makefile
+++ b/math/gsl/Makefile
@@ -1,7 +1,7 @@
# Created by: Andrew L. Neporada <andrew at chg.ru>
PORTNAME= gsl
-PORTVERSION= 2.6
+PORTVERSION= 2.7
CATEGORIES= math
MASTER_SITES= GNU
diff --git a/math/gsl/distinfo b/math/gsl/distinfo
index bbf53b1b2661..3ffd875d5588 100644
--- a/math/gsl/distinfo
+++ b/math/gsl/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1566551853
-SHA256 (gsl-2.6.tar.gz) = b782339fc7a38fe17689cb39966c4d821236c28018b6593ddb6fd59ee40786a8
-SIZE (gsl-2.6.tar.gz) = 7398548
+TIMESTAMP = 1622878012
+SHA256 (gsl-2.7.tar.gz) = efbbf3785da0e53038be7907500628b466152dbc3c173a87de1b5eba2e23602b
+SIZE (gsl-2.7.tar.gz) = 7508761
diff --git a/math/gsl/pkg-plist b/math/gsl/pkg-plist
index 507c6fd2ee47..c4687cf042a3 100644
--- a/math/gsl/pkg-plist
+++ b/math/gsl/pkg-plist
@@ -266,10 +266,11 @@ include/gsl/gsl_vector_ushort.h
include/gsl/gsl_version.h
include/gsl/gsl_wavelet.h
include/gsl/gsl_wavelet2d.h
+include/gsl/test_source.c
lib/libgsl.a
lib/libgsl.so
lib/libgsl.so.25
-lib/libgsl.so.25.0.0
+lib/libgsl.so.25.1.0
lib/libgslcblas.a
lib/libgslcblas.so
lib/libgslcblas.so.0
diff --git a/math/labplot/Makefile b/math/labplot/Makefile
index 912e73349684..55f85eb96dea 100644
--- a/math/labplot/Makefile
+++ b/math/labplot/Makefile
@@ -2,7 +2,7 @@
PORTNAME= labplot
DISTVERSION= 2.8.2
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math kde
MASTER_SITES= KDE/stable/${PORTNAME}/${PORTVERSION}
diff --git a/math/mathgl/Makefile b/math/mathgl/Makefile
index 2966cca6f33d..2487785a0ac9 100644
--- a/math/mathgl/Makefile
+++ b/math/mathgl/Makefile
@@ -1,6 +1,6 @@
PORTNAME= mathgl
DISTVERSION= 2.4.4
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math graphics
MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}%20${PORTVERSION}/
diff --git a/math/ocamlgsl/Makefile b/math/ocamlgsl/Makefile
index 96cd61d79a07..0483ab8359c2 100644
--- a/math/ocamlgsl/Makefile
+++ b/math/ocamlgsl/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ocaml-gsl
DISTVERSIONPREFIX=v
DISTVERSION= 1.19.1
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= math
MAINTAINER= michipili at gmail.com
diff --git a/math/octave-forge-gsl/Makefile b/math/octave-forge-gsl/Makefile
index 919b73e1cf14..d162c94d8d60 100644
--- a/math/octave-forge-gsl/Makefile
+++ b/math/octave-forge-gsl/Makefile
@@ -2,7 +2,7 @@
PORTNAME= octave-forge-gsl
PORTVERSION= 2.1.1
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= math
MAINTAINER= stephen at FreeBSD.org
diff --git a/math/oleo/Makefile b/math/oleo/Makefile
index c8d8dd6c5fc0..623cd8b59751 100644
--- a/math/oleo/Makefile
+++ b/math/oleo/Makefile
@@ -2,7 +2,7 @@
PORTNAME= oleo
PORTVERSION= 1.99.16
-PORTREVISION= 13
+PORTREVISION= 14
CATEGORIES= math
MASTER_SITES= GNU
diff --git a/math/orpie/Makefile b/math/orpie/Makefile
index 8f701211883c..2fba3087abf4 100644
--- a/math/orpie/Makefile
+++ b/math/orpie/Makefile
@@ -2,7 +2,7 @@
PORTNAME= orpie
PORTVERSION= 1.5.2
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES+= math
MASTER_SITES= GENTOO http://pessimization.com/software/orpie/
diff --git a/math/p5-Math-GSL/Makefile b/math/p5-Math-GSL/Makefile
index b8e22d33a3de..b4972fae9a3f 100644
--- a/math/p5-Math-GSL/Makefile
+++ b/math/p5-Math-GSL/Makefile
@@ -2,6 +2,7 @@
PORTNAME= Math-GSL
PORTVERSION= 0.42
+PORTREVISION= 1
CATEGORIES= math perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
diff --git a/math/p5-Math-GSL/files/patch-inc-GSLBuilder.pm b/math/p5-Math-GSL/files/patch-inc-GSLBuilder.pm
index 39fa1a44e90b..a267d5119ecb 100644
--- a/math/p5-Math-GSL/files/patch-inc-GSLBuilder.pm
+++ b/math/p5-Math-GSL/files/patch-inc-GSLBuilder.pm
@@ -1,6 +1,6 @@
---- inc/GSLBuilder.pm.orig 2018-12-10 17:11:25 UTC
+--- inc/GSLBuilder.pm.orig 2020-06-12 22:07:37 UTC
+++ inc/GSLBuilder.pm
-@@ -262,7 +262,7 @@ sub link_c {
+@@ -279,7 +279,7 @@ sub link_c {
}
}
@@ -9,7 +9,7 @@
my @shrp = $self->split_like_shell($cf->{shrpenv});
my @ld = $self->split_like_shell($cf->{ld} || $Config{cc});
-@@ -294,7 +294,7 @@ sub compile_c {
+@@ -311,7 +311,7 @@ sub compile_c {
$cf->{installarchlib} = $Config{archlib};
diff --git a/math/p5-Math-GSL/files/patch-inc_Ver2Func.pm b/math/p5-Math-GSL/files/patch-inc_Ver2Func.pm
new file mode 100644
index 000000000000..8ac5d9054710
--- /dev/null
+++ b/math/p5-Math-GSL/files/patch-inc_Ver2Func.pm
@@ -0,0 +1,11 @@
+--- inc/Ver2Func.pm.orig 2021-06-16 17:58:11 UTC
++++ inc/Ver2Func.pm
+@@ -397,6 +397,8 @@ my @ver2func = (
+ ^gsl_matrix_uint_scale_columns$
+ /
+ ]
++ },
++ "2.7" => {
+ }
+ );
+
diff --git a/math/py-cvxopt/Makefile b/math/py-cvxopt/Makefile
index 54a339174581..71fd81c36c6c 100644
--- a/math/py-cvxopt/Makefile
+++ b/math/py-cvxopt/Makefile
@@ -1,5 +1,6 @@
PORTNAME= cvxopt
DISTVERSION= 1.2.6
+PORTREVISION= 1
CATEGORIES= math python
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/math/py-pygsl/Makefile b/math/py-pygsl/Makefile
index 75eb3f3dcec0..5abb2a33d174 100644
--- a/math/py-pygsl/Makefile
+++ b/math/py-pygsl/Makefile
@@ -3,7 +3,7 @@
PORTNAME= pygsl
PORTVERSION= 2.3.0
DISTVERSIONSUFFIX= .1
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= math python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/math/py-pygslodeiv2/Makefile b/math/py-pygslodeiv2/Makefile
index 2610e5b277d7..851dc798d3f8 100644
--- a/math/py-pygslodeiv2/Makefile
+++ b/math/py-pygslodeiv2/Makefile
@@ -1,5 +1,6 @@
PORTNAME= pygslodeiv2
DISTVERSION= 0.9.4
+PORTREVISION= 1
CATEGORIES= math python
MASTER_SITES= CHEESESHOP
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/math/rubygem-rb-gsl/Makefile b/math/rubygem-rb-gsl/Makefile
index d3686f805a78..328d70a693c9 100644
--- a/math/rubygem-rb-gsl/Makefile
+++ b/math/rubygem-rb-gsl/Makefile
@@ -2,7 +2,7 @@
PORTNAME= gsl
PORTVERSION= 2.1.0.2
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= math rubygems
MASTER_SITES= RG
PKGNAMEPREFIX= rubygem-rb-
diff --git a/math/sage/Makefile b/math/sage/Makefile
index 7257b88aa524..25242e2d74d7 100644
--- a/math/sage/Makefile
+++ b/math/sage/Makefile
@@ -2,7 +2,7 @@
PORTNAME= sage
PORTVERSION= 9.2
-PORTREVISION= 15
+PORTREVISION= 16
CATEGORIES= math
MASTER_SITES= https://mirrors.xmission.com/sage/src/ \
http://mirrors.xmission.com/sage/src/ \
diff --git a/misc/visp/Makefile b/misc/visp/Makefile
index e42c21744a1b..6cb506a89053 100644
--- a/misc/visp/Makefile
+++ b/misc/visp/Makefile
@@ -1,5 +1,6 @@
PORTNAME= visp
DISTVERSION= 3.4.0
+PORTREVISION= 1
CATEGORIES= misc
MASTER_SITES= https://visp-doc.inria.fr/download/releases/
diff --git a/net/ns3/Makefile b/net/ns3/Makefile
index c2c860f61bf2..14dbcc930bec 100644
--- a/net/ns3/Makefile
+++ b/net/ns3/Makefile
@@ -1,5 +1,6 @@
PORTNAME= ns3
PORTVERSION= 3.33
+PORTREVISION= 1
CATEGORIES= net education
MASTER_SITES= https://www.nsnam.org/release/
DISTNAME= ns-allinone-${PORTVERSION}
diff --git a/science/afni/Makefile b/science/afni/Makefile
index 38412036cef6..21ea9b77236f 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -1,6 +1,7 @@
PORTNAME= afni
DISTVERSIONPREFIX= AFNI_
DISTVERSION= 21.1.12
+PORTREVISION= 1
CATEGORIES= science biology graphics perl5 python
MAINTAINER= fernape at FreeBSD.org
diff --git a/science/antioch/Makefile b/science/antioch/Makefile
index dda5ee4d4300..16659ee2a5c0 100644
--- a/science/antioch/Makefile
+++ b/science/antioch/Makefile
@@ -2,7 +2,7 @@ PORTNAME= antioch
DISTVERSIONPREFIX= v
DISTVERSION= 0.4.0-156
DISTVERSIONSUFFIX= -g90ffa43
-PORTREVISION= 9
+PORTREVISION= 10
CATEGORIES= science
MAINTAINER= yuri at FreeBSD.org
diff --git a/science/dakota/Makefile b/science/dakota/Makefile
index 921e923b8d64..9cd33f71e34e 100644
--- a/science/dakota/Makefile
+++ b/science/dakota/Makefile
@@ -1,6 +1,6 @@
PORTNAME= dakota
DISTVERSION= 6.13.0
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= science
MASTER_SITES= https://dakota.sandia.gov/sites/default/files/distributions/public/
diff --git a/science/erkale/Makefile b/science/erkale/Makefile
index 9d94da01b9ec..e857f89524b9 100644
--- a/science/erkale/Makefile
+++ b/science/erkale/Makefile
@@ -1,5 +1,6 @@
PORTNAME= erkale
DISTVERSION= g20210215
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri at FreeBSD.org
diff --git a/science/fisicalab/Makefile b/science/fisicalab/Makefile
index bb19627e2e8a..0e4413a0edf0 100644
--- a/science/fisicalab/Makefile
+++ b/science/fisicalab/Makefile
@@ -1,6 +1,6 @@
PORTNAME= fisicalab
PORTVERSION= 0.3.3
-PORTREVISION= 12
+PORTREVISION= 13
CATEGORIES= science education gnustep
MASTER_SITES= SAVANNAH
diff --git a/science/getdp/Makefile b/science/getdp/Makefile
index 9d31845a0675..1392f6779c47 100644
--- a/science/getdp/Makefile
+++ b/science/getdp/Makefile
@@ -2,6 +2,7 @@
PORTNAME= getdp
PORTVERSION= 3.3.0
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= http://www.geuz.org/getdp/src/
DISTNAME= ${PORTNAME}-${PORTVERSION}-source
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index 875dc7e54d0f..2651805811bb 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -4,7 +4,7 @@ PORTNAME= gnudatalanguage
PORTVERSION= 1.0.0
DISTVERSIONPREFIX= v
DISTVERSIONSUFFIX= -rc.3
-PORTREVISION= 3
+PORTREVISION= 4
CATEGORIES= science lang
.if defined(BUILD_PYTHON_MODULE)
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
diff --git a/science/jdftx/Makefile b/science/jdftx/Makefile
index ddb3ba452495..fc72422e5bf3 100644
--- a/science/jdftx/Makefile
+++ b/science/jdftx/Makefile
@@ -1,6 +1,7 @@
PORTNAME= jdftx
DISTVERSIONPREFIX= v
DISTVERSION= 1.6.0
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= yuri at FreeBSD.org
diff --git a/science/kst2/Makefile b/science/kst2/Makefile
index 8c306590cf4b..c7e70b957d90 100644
--- a/science/kst2/Makefile
+++ b/science/kst2/Makefile
@@ -2,6 +2,7 @@
PORTNAME= kst
DISTVERSION= ${KST_VERSION}.${KST_DATE}
+PORTREVISION= 1
CATEGORIES= science
MAINTAINER= makc at FreeBSD.org
diff --git a/science/nest/Makefile b/science/nest/Makefile
index df128a0b4b74..29fa2aa073b1 100644
--- a/science/nest/Makefile
+++ b/science/nest/Makefile
@@ -1,6 +1,7 @@
PORTNAME= nest
DISTVERSIONPREFIX= v
DISTVERSION= 2.20.1
+PORTREVISION= 1
CATEGORIES= science biology # NEST is used in neuroscience
MAINTAINER= yuri at FreeBSD.org
diff --git a/science/octopus/Makefile b/science/octopus/Makefile
index 2b13fd9e5b81..c8b45bfd77b4 100644
--- a/science/octopus/Makefile
+++ b/science/octopus/Makefile
@@ -1,5 +1,6 @@
PORTNAME= octopus
DISTVERSION= 10.3
+PORTREVISION= 1
CATEGORIES= science
MASTER_SITES= https://octopus-code.org/download/${DISTVERSION}/
diff --git a/science/scidavis/Makefile b/science/scidavis/Makefile
index b2b3b416f847..0c0d1f4928ec 100644
--- a/science/scidavis/Makefile
+++ b/science/scidavis/Makefile
@@ -1,6 +1,6 @@
PORTNAME= scidavis
PORTVERSION= 2.4.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= science
MAINTAINER= makc at FreeBSD.org
diff --git a/science/step/Makefile b/science/step/Makefile
index f3a33076f5b6..f7e95b2cb062 100644
--- a/science/step/Makefile
+++ b/science/step/Makefile
@@ -1,5 +1,6 @@
PORTNAME= step
DISTVERSION= ${KDE_APPLICATIONS_VERSION}
+PORTREVISION= 1
CATEGORIES= science education kde kde-applications
MAINTAINER= kde at FreeBSD.org
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