git: af1b8fdf8392 - main - science/cantera: New port: Chemical kinetics, thermodynamics, and transport tool suite
Yuri Victorovich
yuri at FreeBSD.org
Fri Sep 10 18:51:15 UTC 2021
The branch main has been updated by yuri:
URL: https://cgit.FreeBSD.org/ports/commit/?id=af1b8fdf83929fcf6acf149bcdb9b81a59cd5981
commit af1b8fdf83929fcf6acf149bcdb9b81a59cd5981
Author: Yuri Victorovich <yuri at FreeBSD.org>
AuthorDate: 2021-09-10 18:48:19 +0000
Commit: Yuri Victorovich <yuri at FreeBSD.org>
CommitDate: 2021-09-10 18:50:08 +0000
science/cantera: New port: Chemical kinetics, thermodynamics, and transport tool suite
---
science/Makefile | 1 +
science/cantera/Makefile | 51 ++++++
science/cantera/distinfo | 3 +
science/cantera/files/patch-SConstruct | 35 ++++
science/cantera/pkg-descr | 4 +
science/cantera/pkg-plist | 312 +++++++++++++++++++++++++++++++++
6 files changed, 406 insertions(+)
diff --git a/science/Makefile b/science/Makefile
index a670fb648dff..0d094c356ee6 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -34,6 +34,7 @@
SUBDIR += berkeleygw
SUBDIR += bodr
SUBDIR += buddy
+ SUBDIR += cantera
SUBDIR += cdcl
SUBDIR += cdf
SUBDIR += cdk
diff --git a/science/cantera/Makefile b/science/cantera/Makefile
new file mode 100644
index 000000000000..f8891b0e3d5d
--- /dev/null
+++ b/science/cantera/Makefile
@@ -0,0 +1,51 @@
+PORTNAME= cantera
+DISTVERSIONPREFIX= v
+DISTVERSION= 2.5.1-552
+DISTVERSIONSUFFIX= -gcf085e47e
+CATEGORIES= science # chemistry physics
+
+MAINTAINER= yuri at FreeBSD.org
+COMMENT= Chemical kinetics, thermodynamics, and transport tool suite
+
+LICENSE= BSD3CLAUSE
+LICENSE_FILE= ${WRKSRC}/License.txt
+
+BUILD_DEPENDS= googletest>0:devel/googletest
+LIB_DEPENDS= libfmt.so:devel/libfmt \
+ libsundials_cvodes.so:math/sundials \
+ libyaml-cpp.so:devel/yaml-cpp
+
+USES= compiler:c++11-lang eigen:3 python scons
+USE_LDCONFIG= yes
+
+USE_GITHUB= yes
+GH_ACCOUNT= Cantera
+
+MAKE_ARGS= system_eigen='y' \
+ system_sundials='y' \
+ system_fmt='y' \
+ system_yamlcpp='y' \
+ googletest='system' \
+ sundials_include='/usr/local/include/sundials' \
+ extra_inc_dirs="${LOCALBASE}/include:${LOCALBASE}/include/eigen3" \
+ extra_lib_dirs="${LOCALBASE}/lib" \
+ debug='no' \
+ cc_flags="${CXXFLAGS}" \
+ prefix="${PREFIX}"
+
+ALL_TARGET= build
+TEST_TARGET= test # some tests fail, see https://github.com/Cantera/cantera/issues/1095
+
+OPTIONS_DEFINE= PYTHON
+
+PYTHON_MAKE_ARGS= python_cmd="${PYTHON_CMD}"
+PYTHON_MAKE_ARGS_OFF= python_package="none"
+PYTHON_BROKEN= installs *.cpython-38.pyc files referring to the stage directory, see https://github.com/Cantera/cantera/issues/1094
+
+do-install:
+ cd ${WRKSRC} && \
+ ${MAKE_CMD} install \
+ stage_dir="${STAGEDIR}"
+ @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libcantera_shared.so.2.6.0
+
+.include <bsd.port.mk>
diff --git a/science/cantera/distinfo b/science/cantera/distinfo
new file mode 100644
index 000000000000..ddd23d1bb6a7
--- /dev/null
+++ b/science/cantera/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1631262476
+SHA256 (Cantera-cantera-v2.5.1-552-gcf085e47e_GH0.tar.gz) = 3afb841fe2e20ed2b4271f8d9bc2b6dac87d2dac0fed6ae5b308bb51f73ba71a
+SIZE (Cantera-cantera-v2.5.1-552-gcf085e47e_GH0.tar.gz) = 2465290
diff --git a/science/cantera/files/patch-SConstruct b/science/cantera/files/patch-SConstruct
new file mode 100644
index 000000000000..e26a83d55b4b
--- /dev/null
+++ b/science/cantera/files/patch-SConstruct
@@ -0,0 +1,35 @@
+--- SConstruct.orig 2021-09-03 11:33:59 UTC
++++ SConstruct
+@@ -312,7 +312,7 @@ elif 'icc' in env.subst('$CC'):
+ defaults.warningFlags = '-Wcheck'
+ env['openmp_flag'] = ['-openmp']
+
+-elif 'clang' in env.subst('$CC'):
++elif 'clang' in env.subst('$CC') or 'cc' in env.subst('$CC'):
+ defaults.ccFlags = '-fcolor-diagnostics'
+ defaults.cxxFlags = '-std=c++11'
+ defaults.buildPch = True
+@@ -718,17 +718,18 @@ valid_arguments = (set(opt[0] for opt in windows_compi
+ for arg in ARGUMENTS:
+ if arg not in valid_arguments:
+ print('Encountered unexpected command line argument: %r' % arg)
+- sys.exit(1)
++ #sys.exit(1)
+
+ env["cantera_version"] = "2.6.0a2"
+ # For use where pre-release tags are not permitted (MSI, sonames)
+ env['cantera_pure_version'] = re.match(r'(\d+\.\d+\.\d+)', env['cantera_version']).group(0)
+ env['cantera_short_version'] = re.match(r'(\d+\.\d+)', env['cantera_version']).group(0)
+
+-try:
+- env["git_commit"] = get_command_output("git", "rev-parse", "--short", "HEAD")
+-except subprocess.CalledProcessError:
+- env["git_commit"] = "unknown"
++#try:
++# env["git_commit"] = get_command_output("git", "rev-parse", "--short", "HEAD")
++#except subprocess.CalledProcessError:
++# env["git_commit"] = "unknown"
++env["git_commit"] = "unknown"
+
+ # Print values of all build options:
+ print("Configuration variables read from 'cantera.conf' and command line:")
diff --git a/science/cantera/pkg-descr b/science/cantera/pkg-descr
new file mode 100644
index 000000000000..7ebb53c5c9c7
--- /dev/null
+++ b/science/cantera/pkg-descr
@@ -0,0 +1,4 @@
+Cantera is an open-source suite of tools for problems involving chemical
+kinetics, thermodynamics, and transport processes.
+
+WWW: https://cantera.org/
diff --git a/science/cantera/pkg-plist b/science/cantera/pkg-plist
new file mode 100644
index 000000000000..331000ae9a17
--- /dev/null
+++ b/science/cantera/pkg-plist
@@ -0,0 +1,312 @@
+bin/setup_cantera
+bin/setup_cantera.csh
+include/cantera/Cantera.mak
+include/cantera/base/AnyMap.h
+include/cantera/base/AnyMap.inl.h
+include/cantera/base/Array.h
+include/cantera/base/FactoryBase.h
+include/cantera/base/Solution.h
+include/cantera/base/Units.h
+include/cantera/base/ValueCache.h
+include/cantera/base/YamlWriter.h
+include/cantera/base/clockWC.h
+include/cantera/base/config.h
+include/cantera/base/config.h.in
+include/cantera/base/ct_defs.h
+include/cantera/base/ctexceptions.h
+include/cantera/base/ctml.h
+include/cantera/base/fmt.h
+include/cantera/base/global.h
+include/cantera/base/logger.h
+include/cantera/base/plots.h
+include/cantera/base/stringUtils.h
+include/cantera/base/utilities.h
+include/cantera/base/xml.h
+include/cantera/base/yaml.h
+include/cantera/clib/clib_defs.h
+include/cantera/clib/ct.h
+include/cantera/clib/ctfunc.h
+include/cantera/clib/ctmatlab.h
+include/cantera/clib/ctmultiphase.h
+include/cantera/clib/ctonedim.h
+include/cantera/clib/ctreactor.h
+include/cantera/clib/ctrpath.h
+include/cantera/clib/ctsurf.h
+include/cantera/clib/ctxml.h
+include/cantera/cython/funcWrapper.h
+include/cantera/cython/wrappers.h
+include/cantera/equil/ChemEquil.h
+include/cantera/equil/MultiPhase.h
+include/cantera/equil/MultiPhaseEquil.h
+include/cantera/equil/vcs_MultiPhaseEquil.h
+include/cantera/equil/vcs_SpeciesProperties.h
+include/cantera/equil/vcs_VolPhase.h
+include/cantera/equil/vcs_defs.h
+include/cantera/equil/vcs_internal.h
+include/cantera/equil/vcs_solve.h
+include/cantera/equil/vcs_species_thermo.h
+include/cantera/kinetics.h
+include/cantera/kinetics/BulkKinetics.h
+include/cantera/kinetics/EdgeKinetics.h
+include/cantera/kinetics/Falloff.h
+include/cantera/kinetics/FalloffFactory.h
+include/cantera/kinetics/FalloffMgr.h
+include/cantera/kinetics/GasKinetics.h
+include/cantera/kinetics/Group.h
+include/cantera/kinetics/ImplicitSurfChem.h
+include/cantera/kinetics/InterfaceKinetics.h
+include/cantera/kinetics/Kinetics.h
+include/cantera/kinetics/KineticsFactory.h
+include/cantera/kinetics/MultiRate.h
+include/cantera/kinetics/RateCoeffMgr.h
+include/cantera/kinetics/Reaction.h
+include/cantera/kinetics/ReactionData.h
+include/cantera/kinetics/ReactionFactory.h
+include/cantera/kinetics/ReactionPath.h
+include/cantera/kinetics/ReactionRate.h
+include/cantera/kinetics/ReactionRateFactory.h
+include/cantera/kinetics/RxnRates.h
+include/cantera/kinetics/StoichManager.h
+include/cantera/kinetics/ThirdBodyCalc.h
+include/cantera/kinetics/importKinetics.h
+include/cantera/kinetics/reaction_defs.h
+include/cantera/kinetics/solveSP.h
+include/cantera/numerics/BandMatrix.h
+include/cantera/numerics/CVodesIntegrator.h
+include/cantera/numerics/DAE_Solver.h
+include/cantera/numerics/DenseMatrix.h
+include/cantera/numerics/Func1.h
+include/cantera/numerics/FuncEval.h
+include/cantera/numerics/GeneralMatrix.h
+include/cantera/numerics/IDA_Solver.h
+include/cantera/numerics/Integrator.h
+include/cantera/numerics/ResidEval.h
+include/cantera/numerics/ResidJacEval.h
+include/cantera/numerics/ctlapack.h
+include/cantera/numerics/eigen_dense.h
+include/cantera/numerics/funcs.h
+include/cantera/numerics/polyfit.h
+include/cantera/oneD/Boundary1D.h
+include/cantera/oneD/Domain1D.h
+include/cantera/oneD/Inlet1D.h
+include/cantera/oneD/IonFlow.h
+include/cantera/oneD/MultiJac.h
+include/cantera/oneD/MultiNewton.h
+include/cantera/oneD/OneDim.h
+include/cantera/oneD/Sim1D.h
+include/cantera/oneD/StFlow.h
+include/cantera/oneD/refine.h
+include/cantera/onedim.h
+include/cantera/reactionpaths.h
+include/cantera/test/gtest_utils.h
+include/cantera/thermo.h
+include/cantera/thermo/BinarySolutionTabulatedThermo.h
+include/cantera/thermo/ConstCpPoly.h
+include/cantera/thermo/DebyeHuckel.h
+include/cantera/thermo/EdgePhase.h
+include/cantera/thermo/Elements.h
+include/cantera/thermo/GibbsExcessVPSSTP.h
+include/cantera/thermo/HMWSoln.h
+include/cantera/thermo/IdealGasPhase.h
+include/cantera/thermo/IdealMolalSoln.h
+include/cantera/thermo/IdealSolidSolnPhase.h
+include/cantera/thermo/IdealSolnGasVPSS.h
+include/cantera/thermo/IonsFromNeutralVPSSTP.h
+include/cantera/thermo/LatticePhase.h
+include/cantera/thermo/LatticeSolidPhase.h
+include/cantera/thermo/MargulesVPSSTP.h
+include/cantera/thermo/MaskellSolidSolnPhase.h
+include/cantera/thermo/MetalPhase.h
+include/cantera/thermo/MixtureFugacityTP.h
+include/cantera/thermo/MolalityVPSSTP.h
+include/cantera/thermo/Mu0Poly.h
+include/cantera/thermo/MultiSpeciesThermo.h
+include/cantera/thermo/Nasa9Poly1.h
+include/cantera/thermo/Nasa9PolyMultiTempRegion.h
+include/cantera/thermo/NasaPoly1.h
+include/cantera/thermo/NasaPoly2.h
+include/cantera/thermo/PDSS.h
+include/cantera/thermo/PDSSFactory.h
+include/cantera/thermo/PDSS_ConstVol.h
+include/cantera/thermo/PDSS_HKFT.h
+include/cantera/thermo/PDSS_IdealGas.h
+include/cantera/thermo/PDSS_IonsFromNeutral.h
+include/cantera/thermo/PDSS_SSVol.h
+include/cantera/thermo/PDSS_Water.h
+include/cantera/thermo/PengRobinson.h
+include/cantera/thermo/Phase.h
+include/cantera/thermo/PureFluidPhase.h
+include/cantera/thermo/RedlichKisterVPSSTP.h
+include/cantera/thermo/RedlichKwongMFTP.h
+include/cantera/thermo/ShomatePoly.h
+include/cantera/thermo/SingleSpeciesTP.h
+include/cantera/thermo/Species.h
+include/cantera/thermo/SpeciesThermoFactory.h
+include/cantera/thermo/SpeciesThermoInterpType.h
+include/cantera/thermo/StoichSubstance.h
+include/cantera/thermo/SurfPhase.h
+include/cantera/thermo/ThermoFactory.h
+include/cantera/thermo/ThermoPhase.h
+include/cantera/thermo/VPStandardStateTP.h
+include/cantera/thermo/WaterProps.h
+include/cantera/thermo/WaterPropsIAPWS.h
+include/cantera/thermo/WaterPropsIAPWSphi.h
+include/cantera/thermo/WaterSSTP.h
+include/cantera/thermo/electrolytes.h
+include/cantera/thermo/speciesThermoTypes.h
+include/cantera/tpx/Sub.h
+include/cantera/tpx/utils.h
+include/cantera/transport.h
+include/cantera/transport/DustyGasTransport.h
+include/cantera/transport/GasTransport.h
+include/cantera/transport/HighPressureGasTransport.h
+include/cantera/transport/IonGasTransport.h
+include/cantera/transport/MixTransport.h
+include/cantera/transport/MultiTransport.h
+include/cantera/transport/TransportBase.h
+include/cantera/transport/TransportData.h
+include/cantera/transport/TransportFactory.h
+include/cantera/transport/UnityLewisTransport.h
+include/cantera/transport/WaterTransport.h
+include/cantera/zeroD/ConstPressureReactor.h
+include/cantera/zeroD/FlowDevice.h
+include/cantera/zeroD/FlowDeviceFactory.h
+include/cantera/zeroD/FlowReactor.h
+include/cantera/zeroD/IdealGasConstPressureReactor.h
+include/cantera/zeroD/IdealGasReactor.h
+include/cantera/zeroD/Reactor.h
+include/cantera/zeroD/ReactorBase.h
+include/cantera/zeroD/ReactorFactory.h
+include/cantera/zeroD/ReactorNet.h
+include/cantera/zeroD/ReactorSurface.h
+include/cantera/zeroD/Reservoir.h
+include/cantera/zeroD/Wall.h
+include/cantera/zeroD/WallFactory.h
+include/cantera/zeroD/flowControllers.h
+include/cantera/zerodim.h
+lib/libcantera.a
+lib/libcantera_shared.so
+lib/libcantera_shared.so.2
+lib/libcantera_shared.so.2.6.0
+libdata/pkgconfig/cantera.pc
+%%DATADIR%%/data/KOH.cti
+%%DATADIR%%/data/KOH.xml
+%%DATADIR%%/data/KOH.yaml
+%%DATADIR%%/data/air.cti
+%%DATADIR%%/data/air.xml
+%%DATADIR%%/data/air.yaml
+%%DATADIR%%/data/airNASA9.cti
+%%DATADIR%%/data/airNASA9.xml
+%%DATADIR%%/data/airNASA9.yaml
+%%DATADIR%%/data/argon.cti
+%%DATADIR%%/data/argon.xml
+%%DATADIR%%/data/critProperties.xml
+%%DATADIR%%/data/diamond.cti
+%%DATADIR%%/data/diamond.xml
+%%DATADIR%%/data/diamond.yaml
+%%DATADIR%%/data/elements.xml
+%%DATADIR%%/data/graphite.cti
+%%DATADIR%%/data/graphite.xml
+%%DATADIR%%/data/graphite.yaml
+%%DATADIR%%/data/gri30.cti
+%%DATADIR%%/data/gri30.xml
+%%DATADIR%%/data/gri30.yaml
+%%DATADIR%%/data/gri30_highT.cti
+%%DATADIR%%/data/gri30_highT.xml
+%%DATADIR%%/data/gri30_highT.yaml
+%%DATADIR%%/data/gri30_ion.cti
+%%DATADIR%%/data/gri30_ion.xml
+%%DATADIR%%/data/gri30_ion.yaml
+%%DATADIR%%/data/h2o2.cti
+%%DATADIR%%/data/h2o2.xml
+%%DATADIR%%/data/h2o2.yaml
+%%DATADIR%%/data/liquidvapor.cti
+%%DATADIR%%/data/liquidvapor.xml
+%%DATADIR%%/data/liquidvapor.yaml
+%%DATADIR%%/data/lithium_ion_battery.cti
+%%DATADIR%%/data/lithium_ion_battery.xml
+%%DATADIR%%/data/lithium_ion_battery.yaml
+%%DATADIR%%/data/methane_pox_on_pt.cti
+%%DATADIR%%/data/methane_pox_on_pt.xml
+%%DATADIR%%/data/methane_pox_on_pt.yaml
+%%DATADIR%%/data/nDodecane_Reitz.cti
+%%DATADIR%%/data/nDodecane_Reitz.xml
+%%DATADIR%%/data/nDodecane_Reitz.yaml
+%%DATADIR%%/data/nasa.cti
+%%DATADIR%%/data/nasa.xml
+%%DATADIR%%/data/nasa_condensed.cti
+%%DATADIR%%/data/nasa_condensed.xml
+%%DATADIR%%/data/nasa_condensed.yaml
+%%DATADIR%%/data/nasa_gas.cti
+%%DATADIR%%/data/nasa_gas.xml
+%%DATADIR%%/data/nasa_gas.yaml
+%%DATADIR%%/data/ohn.cti
+%%DATADIR%%/data/ohn.xml
+%%DATADIR%%/data/ohn.yaml
+%%DATADIR%%/data/ptcombust.cti
+%%DATADIR%%/data/ptcombust.xml
+%%DATADIR%%/data/ptcombust.yaml
+%%DATADIR%%/data/sample-data/LiC6_electrodebulk.yaml
+%%DATADIR%%/data/silane.cti
+%%DATADIR%%/data/silane.xml
+%%DATADIR%%/data/silane.yaml
+%%DATADIR%%/data/silicon.cti
+%%DATADIR%%/data/silicon.xml
+%%DATADIR%%/data/silicon.yaml
+%%DATADIR%%/data/silicon_carbide.cti
+%%DATADIR%%/data/silicon_carbide.xml
+%%DATADIR%%/data/silicon_carbide.yaml
+%%DATADIR%%/data/sofc.cti
+%%DATADIR%%/data/sofc.xml
+%%DATADIR%%/data/sofc.yaml
+%%DATADIR%%/data/water.cti
+%%DATADIR%%/data/water.xml
+%%DATADIR%%/data/water.yaml
+%%DATADIR%%/doc/LICENSE.txt
+%%DATADIR%%/samples/cxx/LiC6_electrode/CMakeLists.txt
+%%DATADIR%%/samples/cxx/LiC6_electrode/LiC6_electrode.cpp
+%%DATADIR%%/samples/cxx/LiC6_electrode/Makefile
+%%DATADIR%%/samples/cxx/LiC6_electrode/SConstruct
+%%DATADIR%%/samples/cxx/bvp/BoundaryValueProblem.h
+%%DATADIR%%/samples/cxx/bvp/CMakeLists.txt
+%%DATADIR%%/samples/cxx/bvp/Makefile
+%%DATADIR%%/samples/cxx/bvp/SConstruct
+%%DATADIR%%/samples/cxx/bvp/blasius.cpp
+%%DATADIR%%/samples/cxx/combustor/CMakeLists.txt
+%%DATADIR%%/samples/cxx/combustor/Makefile
+%%DATADIR%%/samples/cxx/combustor/SConstruct
+%%DATADIR%%/samples/cxx/combustor/combustor.cpp
+%%DATADIR%%/samples/cxx/custom/CMakeLists.txt
+%%DATADIR%%/samples/cxx/custom/Makefile
+%%DATADIR%%/samples/cxx/custom/SConstruct
+%%DATADIR%%/samples/cxx/custom/custom.cpp
+%%DATADIR%%/samples/cxx/demo/CMakeLists.txt
+%%DATADIR%%/samples/cxx/demo/Makefile
+%%DATADIR%%/samples/cxx/demo/SConstruct
+%%DATADIR%%/samples/cxx/demo/demo.cpp
+%%DATADIR%%/samples/cxx/flamespeed/CMakeLists.txt
+%%DATADIR%%/samples/cxx/flamespeed/Makefile
+%%DATADIR%%/samples/cxx/flamespeed/SConstruct
+%%DATADIR%%/samples/cxx/flamespeed/flamespeed.cpp
+%%DATADIR%%/samples/cxx/gas_transport/CMakeLists.txt
+%%DATADIR%%/samples/cxx/gas_transport/Makefile
+%%DATADIR%%/samples/cxx/gas_transport/SConstruct
+%%DATADIR%%/samples/cxx/gas_transport/gas_transport.cpp
+%%DATADIR%%/samples/cxx/kinetics1/CMakeLists.txt
+%%DATADIR%%/samples/cxx/kinetics1/Makefile
+%%DATADIR%%/samples/cxx/kinetics1/SConstruct
+%%DATADIR%%/samples/cxx/kinetics1/example_utils.h
+%%DATADIR%%/samples/cxx/kinetics1/kinetics1.cpp
+%%DATADIR%%/samples/cxx/openmp_ignition/CMakeLists.txt
+%%DATADIR%%/samples/cxx/openmp_ignition/Makefile
+%%DATADIR%%/samples/cxx/openmp_ignition/SConstruct
+%%DATADIR%%/samples/cxx/openmp_ignition/openmp_ignition.cpp
+%%DATADIR%%/samples/cxx/rankine/CMakeLists.txt
+%%DATADIR%%/samples/cxx/rankine/Makefile
+%%DATADIR%%/samples/cxx/rankine/SConstruct
+%%DATADIR%%/samples/cxx/rankine/rankine.cpp
+share/man/man1/ck2cti.1.gz
+share/man/man1/ck2yaml.1.gz
+share/man/man1/cti2yaml.1.gz
+share/man/man1/ctml2yaml.1.gz
+share/man/man1/ctml_writer.1.gz
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