git: be2fb2f2905d - main - biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set operations on k-mers

[Yuri Victorovich]

The branch main has been updated by yuri:

URL: https://cgit.FreeBSD.org/ports/commit/?id=be2fb2f2905d13d5f2463688dbf319f5940cfccc

commit be2fb2f2905d13d5f2463688dbf319f5940cfccc
Author:     Yuri Victorovich <yuri at FreeBSD.org>
AuthorDate: 2021-05-26 21:39:02 +0000
Commit:     Yuri Victorovich <yuri at FreeBSD.org>
CommitDate: 2021-05-26 22:25:21 +0000

    biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set operations on k-mers
---
 biology/Makefile          |  1 +
 biology/unikmer/Makefile  | 19 +++++++++++++++++++
 biology/unikmer/distinfo  |  5 +++++
 biology/unikmer/pkg-descr | 12 ++++++++++++
 4 files changed, 37 insertions(+)

diff --git a/biology/Makefile b/biology/Makefile
index e5bec235ca01..38761df9c785 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -185,6 +185,7 @@
     SUBDIR += trimmomatic
     SUBDIR += ucsc-userapps
     SUBDIR += ugene
+    SUBDIR += unikmer
     SUBDIR += vcf-split
     SUBDIR += vcf2hap
     SUBDIR += vcflib
diff --git a/biology/unikmer/Makefile b/biology/unikmer/Makefile
new file mode 100644
index 000000000000..fa7eec68c77b
--- /dev/null
+++ b/biology/unikmer/Makefile
@@ -0,0 +1,19 @@
+PORTNAME=	unikmer
+DISTVERSIONPREFIX=	v
+DISTVERSION=	0.18.0
+CATEGORIES=	biology
+
+MAINTAINER=	yuri at FreeBSD.org
+COMMENT=	Toolkit for nucleic acid k-mer analysis, set operations on k-mers
+
+LICENSE=	MIT
+LICENSE_FILE=	${WRKSRC}/LICENSE
+
+USES=		go:modules
+
+GO_MODULE=	github.com/shenwei356/unikmer
+GO_TARGET=	./${PORTNAME}
+
+PLIST_FILES=	bin/${PORTNAME}
+
+.include <bsd.port.mk>
diff --git a/biology/unikmer/distinfo b/biology/unikmer/distinfo
new file mode 100644
index 000000000000..934330ac60cd
--- /dev/null
+++ b/biology/unikmer/distinfo
@@ -0,0 +1,5 @@
+TIMESTAMP = 1622064837
+SHA256 (go/biology_unikmer/unikmer-v0.18.0/v0.18.0.mod) = 6ccade17e0fdfc86ebaa0683f7aab4e3c94019032e0d0f4c78bf957a2a8f9c1b
+SIZE (go/biology_unikmer/unikmer-v0.18.0/v0.18.0.mod) = 881
+SHA256 (go/biology_unikmer/unikmer-v0.18.0/v0.18.0.zip) = ff1d28fc6c79d62fc1a240bec03acc604f9ef7375f22548e0cc472c41b5b349d
+SIZE (go/biology_unikmer/unikmer-v0.18.0/v0.18.0.zip) = 4273162
diff --git a/biology/unikmer/pkg-descr b/biology/unikmer/pkg-descr
new file mode 100644
index 000000000000..7ae41bf53489
--- /dev/null
+++ b/biology/unikmer/pkg-descr
@@ -0,0 +1,12 @@
+unikmer is a golang package and a toolkit for nucleic acid k-mer analysis,
+providing functions including set operation k-mers (sketch) optional with TaxIds
+but without count information.
+
+K-mers are either encoded (k<=32) or hashed (arbitrary k) into uint64, and
+serialized in binary file with extension .unik.
+
+TaxIds can be assigned when counting k-mers from genome sequences, and LCA
+(Lowest Common Ancestor) is computed during set opertions including computing
+union, intersecton, set difference, unique and repeated k-mers.
+
+WWW: https://github.com/shenwei356/unikmer