cvs commit: ports/biology Makefile ports/biology/velvet Makefile distinfo pkg-descr ports/biology/velvet/files patch-Makefile patch-contrib-VelvetOptimiser-VelvetOptimiser.pl patch-src-run.c

[Dmitry Marakasov]

amdmi3      2009-11-07 01:23:59 UTC

  FreeBSD ports repository

  Modified files:
    biology              Makefile 
  Added files:
    biology/velvet       Makefile distinfo pkg-descr 
    biology/velvet/files patch-Makefile 
                         patch-contrib-VelvetOptimiser-VelvetOptimiser.pl 
                         patch-src-run.c 
  Log:
  Velvet is a de novo genomic assembler specially designed for short read
  sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino
  and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI).
  
  Citation:
  
  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
  D.R. Zerbino and E. Birney. Genome Research 18: 821-829 (2008)
  
  WWW: http://www.ebi.ac.uk/~zerbino/velvet/
  
  PR:             140147
  Submitted by:   Motomichi Matsuzaki <mzaki at m.u-tokyo.ac.jp>
  
  Revision  Changes    Path
  1.115     +1 -0      ports/biology/Makefile
  1.1       +89 -0     ports/biology/velvet/Makefile (new)
  1.1       +3 -0      ports/biology/velvet/distinfo (new)
  1.1       +38 -0     ports/biology/velvet/files/patch-Makefile (new)
  1.1       +92 -0     ports/biology/velvet/files/patch-contrib-VelvetOptimiser-VelvetOptimiser.pl (new)
  1.1       +11 -0     ports/biology/velvet/files/patch-src-run.c (new)
  1.1       +10 -0     ports/biology/velvet/pkg-descr (new)