cvs commit: ports/biology Makefile ports/biology/mapm3 Makefile distinfo pkg-descr pkg-plist ports/biology/mapm3/files patch-Makefile patch-lib-iolib.c patch-lib-iolib.h patch-lib-makehelp.c patch-lib-shell.c patch-lib-syscode.c ...

[Rong-En Fan]

rafan       2008-04-06 04:49:06 UTC

  FreeBSD ports repository

  Modified files:
    biology              Makefile 
  Added files:
    biology/mapm3        Makefile distinfo pkg-descr pkg-plist 
    biology/mapm3/files  patch-Makefile patch-lib-iolib.c 
                         patch-lib-iolib.h patch-lib-makehelp.c 
                         patch-lib-shell.c patch-lib-syscode.c 
                         patch-lib-system.h patch-mapm-chroms.c 
                         patch-mapm-database.c patch-mapm-info.c 
                         patch-mapm-map_info.h patch-mapm-mapm.h 
                         patch-mapm-maps.c patch-mapm-npt_cmds.c 
                         patch-mapm-print.c patch-mapm-reader.c 
                         patch-mapm-state.c patch-mapm-sys_cmds.c 
                         patch-mapm-two_cmds.c patch-quant-qcmds.c 
                         patch-quant-qraw.c patch-sun-xmapmaker 
                         patch-sun-xqtl 
  Log:
  MAPMAKER/EXP is a linkage analysis package designed to help construct primary
  linkage maps of markers segregating in experimental crosses. MAPMAKER/EXP
  performs full multipoint linkage analysis (simultaneous estimation of all
  recombination fractions from the primary data) for dominant, recessive, and co-
  dominant (e.g.  RFLP-like) markers.  MAPMAKER/EXP is an experimental-cross-only
  successor to the original MAPMAKER program.
  
  MAPMAKER/QTL is a companion program to MAPMAKER/EXP which allows one to map
  genes controlling polygenic quantitative traits in F2 intercrosses and BC1
  backcrosses relative to a genetic linkage map. More information on MAPMAKER/QTL
  can be found in the technical report (included with MAPMAKER/QTL).
  
  WWW: http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/
  
  PR:             ports/122452
  Submitted by:   Tassilo Philipp <tphilipp at potion-studios.com>
  
  Revision  Changes    Path
  1.95      +1 -0      ports/biology/Makefile
  1.1       +26 -0     ports/biology/mapm3/Makefile (new)
  1.1       +3 -0      ports/biology/mapm3/distinfo (new)
  1.1       +54 -0     ports/biology/mapm3/files/patch-Makefile (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-lib-iolib.c (new)
  1.1       +78 -0     ports/biology/mapm3/files/patch-lib-iolib.h (new)
  1.1       +81 -0     ports/biology/mapm3/files/patch-lib-makehelp.c (new)
  1.1       +81 -0     ports/biology/mapm3/files/patch-lib-shell.c (new)
  1.1       +43 -0     ports/biology/mapm3/files/patch-lib-syscode.c (new)
  1.1       +71 -0     ports/biology/mapm3/files/patch-lib-system.h (new)
  1.1       +29 -0     ports/biology/mapm3/files/patch-mapm-chroms.c (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-database.c (new)
  1.1       +41 -0     ports/biology/mapm3/files/patch-mapm-info.c (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-map_info.h (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-mapm.h (new)
  1.1       +72 -0     ports/biology/mapm3/files/patch-mapm-maps.c (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-npt_cmds.c (new)
  1.1       +11 -0     ports/biology/mapm3/files/patch-mapm-print.c (new)
  1.1       +191 -0    ports/biology/mapm3/files/patch-mapm-reader.c (new)
  1.1       +18 -0     ports/biology/mapm3/files/patch-mapm-state.c (new)
  1.1       +47 -0     ports/biology/mapm3/files/patch-mapm-sys_cmds.c (new)
  1.1       +16 -0     ports/biology/mapm3/files/patch-mapm-two_cmds.c (new)
  1.1       +93 -0     ports/biology/mapm3/files/patch-quant-qcmds.c (new)
  1.1       +53 -0     ports/biology/mapm3/files/patch-quant-qraw.c (new)
  1.1       +9 -0      ports/biology/mapm3/files/patch-sun-xmapmaker (new)
  1.1       +9 -0      ports/biology/mapm3/files/patch-sun-xqtl (new)
  1.1       +13 -0     ports/biology/mapm3/pkg-descr (new)
  1.1       +6 -0      ports/biology/mapm3/pkg-plist (new)