[Bug 273670] biology/seqan3: Fails to build with GCC 13: The SDSL library is required, but wasn't found.
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Date: Sun, 10 Sep 2023 06:53:11 UTC
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=273670
Bug ID: 273670
Summary: biology/seqan3: Fails to build with GCC 13: The SDSL
library is required, but wasn't found.
Product: Ports & Packages
Version: Latest
Hardware: Any
OS: Any
Status: New
Severity: Affects Only Me
Priority: ---
Component: Individual Port(s)
Assignee: yuri@freebsd.org
Reporter: salvadore@freebsd.org
Blocks: 273397
Assignee: yuri@freebsd.org
Flags: maintainer-feedback?(yuri@freebsd.org)
=======================<phase: configure >============================
===> Configuring for seqan3-3.2.0_2
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/seqan3/work/.build
-- The CXX compiler identification is GNU 13.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/local/bin/g++13 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- [1mFinding SeqAn3 and checking requirements:[m
-- SeqAn3 include dir found:
/wrkdirs/usr/ports/biology/seqan3/work/seqan3-3.2.0/include
-- Detected as running from a repository checkout…
-- …adding submodule include:
/wrkdirs/usr/ports/biology/seqan3/work/seqan3-3.2.0/submodules/sdsl-lite/include
-- C++ Standard-20 support: via -std=c++20
-- C++ Concepts support: via -std=c++20
-- Thread support: via -pthread
CMake Error at build_system/seqan3-config.cmake:113 (message):
The SDSL library is required, but wasn't found. Get it from
https://github.com/xxsds/sdsl-lite
Call Stack (most recent call first):
build_system/seqan3-config.cmake:319 (seqan3_config_error)
CMakeLists.txt:32 (find_package)
-- Configuring incomplete, errors occurred!
*** Error code 1
This page can be helpful:
https://gcc.gnu.org/gcc-13/porting_to.html
Referenced Bugs:
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=273397
[Bug 273397] [exp-run] Update GCC_DEFAULT to 13 etc.
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