[Bug 258478] biology/emboss: Add wrapper to eliminate need for altered PATH

From: <bugzilla-noreply_at_freebsd.org>
Date: Mon, 13 Sep 2021 13:43:39 UTC
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=258478

            Bug ID: 258478
           Summary: biology/emboss: Add wrapper to eliminate need for
                    altered PATH
           Product: Ports & Packages
           Version: Latest
          Hardware: Any
                OS: Any
            Status: New
          Severity: Affects Some People
          Priority: ---
         Component: Individual Port(s)
          Assignee: wen@FreeBSD.org
          Reporter: jwb@freebsd.org
             Flags: maintainer-feedback?(wen@FreeBSD.org)
          Assignee: wen@FreeBSD.org

Created attachment 227873
  --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=227873&action=edit
Unified diff adding C wrapper

The attached patch turns emboss commands into subcommands much like those used
by bwa, samtools, bedtools, etc.  This allows users to run emboss commands
without altering their PATH, and allows simultaneous access to conflicting
commands such as /usr/local/bin/garnier and /usr/local/emboss/bin/garnier.

E.g.

emboss garnier   # Runs /usr/local/emboss/bin/garnier
garnier          # Runs /usr/local/bin/garnier (from biology/fasta)

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