[Bug 258478] biology/emboss: Add wrapper to eliminate need for altered PATH
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Date: Mon, 13 Sep 2021 13:43:39 UTC
https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=258478
Bug ID: 258478
Summary: biology/emboss: Add wrapper to eliminate need for
altered PATH
Product: Ports & Packages
Version: Latest
Hardware: Any
OS: Any
Status: New
Severity: Affects Some People
Priority: ---
Component: Individual Port(s)
Assignee: wen@FreeBSD.org
Reporter: jwb@freebsd.org
Flags: maintainer-feedback?(wen@FreeBSD.org)
Assignee: wen@FreeBSD.org
Created attachment 227873
--> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=227873&action=edit
Unified diff adding C wrapper
The attached patch turns emboss commands into subcommands much like those used
by bwa, samtools, bedtools, etc. This allows users to run emboss commands
without altering their PATH, and allows simultaneous access to conflicting
commands such as /usr/local/bin/garnier and /usr/local/emboss/bin/garnier.
E.g.
emboss garnier # Runs /usr/local/emboss/bin/garnier
garnier # Runs /usr/local/bin/garnier (from biology/fasta)
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