[package - 144i386-default][biology/seqwish] Failed for seqwish-0.7.12 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Tue, 15 Sep 2026 05:23:34 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/144i386-default/ab9b0dae6a5e/logs/seqwish-0.7.12.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=144i386-default&build=ab9b0dae6a5e
Log:
=>> Building biology/seqwish
build started at Tue Sep 15 05:21:41 UTC 2026
port directory: /usr/ports/biology/seqwish
package name: seqwish-0.7.12
building for: FreeBSD 144i386-default-job-01 14.4-RELEASE-p9 FreeBSD 14.4-RELEASE-p9 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 646 Sep 12 01:01 /usr/ports/biology/seqwish/Makefile
Ports top last git commit: ab9b0dae6a5e47f58aee3fe0f123e558c869ee25
Ports top unclean checkout: no
Port dir last git commit: 90eedca667726630830532c8ba007b1fde3a71c0
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.8-3-gd92fb7c0
Host OSVERSION: 1600022
Jail OSVERSION: 1404000
Job Id: 01
---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1404000
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=14.4-RELEASE-p9
LOCALBASE=/usr/local
UNAME_v=FreeBSD 14.4-RELEASE-p9
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.8-3-gd92fb7c0
MASTERMNT=/usr/local/poudriere/data/.m/144i386-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/144i386-default/01/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=144i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/144i386-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.8-3-gd92fb7c0
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/wrkdirs/usr/ports/biology/seqwish/work" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/wrkdirs/usr/ports/biology/seqwish/work" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install
-m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> seqwish-0.7.12 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.8.4.pkg
[144i386-default-job-01] Installing pkg-2.8.4...
[144i386-default-job-01] Extracting pkg-2.8.4: .......... done
===> seqwish-0.7.12 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of seqwish-0.7.12
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
=> rust/crates/clap-4.6.4.crate doesn't seem to exist in /portdistfiles.
=> Attempting to fetch https://static.crates.io/crates/clap/clap-4.6.4.crate?dummy=/rust/crates/clap-4.6.4.crate
rust/crates/clap-4.6.4.crate 62 kB 6468 kBps 00s
=> rust/crates/clap_builder-4.6.2.crate doesn't seem to exist in /portdistfiles.
=> Attempting to fetch https://static.crates.io/crates/clap_builder/clap_builder-4.6.2.crate?dummy=/rust/crates/clap_builder-4.6.2.crate
rust/crates/clap_builder-4.6.2.crate 166 kB 8757 kBps 00s
=> rust/crates/jobserver-0.1.35.crate doesn't seem to exist in /portdistfiles.
=> Attempting to fetch https://static.crates.io/crates/jobserver/jobserver-0.1.35.crate?dummy=/rust/crates/jobserver-0.1.35.crate
rust/crates/jobserver-0.1.35.crate 28 kB 8346 kBps 00s
=> rust/crates/zerocopy-0.8.55.crate doesn't seem to exist in /portdistfiles.
=> Attempting to fetch https://static.crates.io/crates/zerocopy/zerocopy-0.8.55.crate?dummy=/rust/crates/zerocopy-0.8.55.crate
rust/crates/zerocopy-0.8.55.crate 278 kB 9729 kBps 00s
=> rust/crates/zerocopy-derive-0.8.55.crate doesn't seem to exist in /portdistfiles.
=> Attempting to fetch https://static.crates.io/crates/zerocopy-derive/zerocopy-derive-0.8.55.crate?dummy=/rust/crates/zerocopy-derive-0.8.55.crate
rust/crates/zerocopy-derive-0.8.55.crate 100 kB 8011 kBps 00s
===> Fetching all distfiles required by seqwish-0.7.12 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.12 for building
=> SHA256 Checksum OK for seqwish-v0.7.12.tar.gz.
=> SHA256 Checksum OK for rust/crates/adler2-2.0.1.crate.
=> SHA256 Checksum OK for rust/crates/ahash-0.8.12.crate.
=> SHA256 Checksum OK for rust/crates/aho-corasick-1.1.4.crate.
=> SHA256 Checksum OK for rust/crates/allocator-api2-0.2.21.crate.
=> SHA256 Checksum OK for rust/crates/anes-0.1.6.crate.
=> SHA256 Checksum OK for rust/crates/anstream-1.0.0.crate.
=> SHA256 Checksum OK for rust/crates/anstyle-1.0.14.crate.
=> SHA256 Checksum OK for rust/crates/anstyle-parse-1.0.0.crate.
=> SHA256 Checksum OK for rust/crates/anstyle-query-1.1.5.crate.
=> SHA256 Checksum OK for rust/crates/anstyle-wincon-3.0.11.crate.
=> SHA256 Checksum OK for rust/crates/anyhow-1.0.104.crate.
=> SHA256 Checksum OK for rust/crates/arbitrary-chunks-0.4.1.crate.
=> SHA256 Checksum OK for rust/crates/autocfg-1.5.1.crate.
=> SHA256 Checksum OK for rust/crates/bincode-1.3.3.crate.
=> SHA256 Checksum OK for rust/crates/bitflags-2.13.1.crate.
=> SHA256 Checksum OK for rust/crates/bitvec-1.1.1.crate.
=> SHA256 Checksum OK for rust/crates/block-buffer-0.10.4.crate.
=> SHA256 Checksum OK for rust/crates/block-pseudorand-0.1.2.crate.
=> SHA256 Checksum OK for rust/crates/bumpalo-3.20.3.crate.
=> SHA256 Checksum OK for rust/crates/byteorder-1.5.0.crate.
=> SHA256 Checksum OK for rust/crates/cast-0.3.0.crate.
=> SHA256 Checksum OK for rust/crates/cbindgen-0.27.0.crate.
=> SHA256 Checksum OK for rust/crates/cc-1.3.0.crate.
=> SHA256 Checksum OK for rust/crates/cfg-if-1.0.4.crate.
=> SHA256 Checksum OK for rust/crates/chiapos-chacha8-0.1.0.crate.
=> SHA256 Checksum OK for rust/crates/ciborium-0.2.2.crate.
<snip>
| +++
warning: hiding a lifetime that's elided elsewhere is confusing
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/bitvec-1.1.1/src/slice/api.rs:1805:24
|
1805 | pub fn rsplitn_mut<F>(&mut self, n: usize, pred: F) -> RSplitNMut<T, O, F>
| ^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
| |
| the lifetime is elided here
|
= help: the same lifetime is referred to in inconsistent ways, making the signature confusing
help: use `'_` for type paths
|
1805 | pub fn rsplitn_mut<F>(&mut self, n: usize, pred: F) -> RSplitNMut<'_, T, O, F>
| +++
warning: hiding a lifetime that's elided elsewhere is confusing
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/bitvec-1.1.1/src/vec/api.rs:736:18
|
736 | pub fn drain<R>(&mut self, range: R) -> Drain<T, O>
| ^^^^^^^^^ ^^^^^^^^^^^ the same lifetime is hidden here
| |
| the lifetime is elided here
|
= help: the same lifetime is referred to in inconsistent ways, making the signature confusing
help: use `'_` for type paths
|
736 | pub fn drain<R>(&mut self, range: R) -> Drain<'_, T, O>
| +++
warning: hiding a lifetime that's elided elsewhere is confusing
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/bitvec-1.1.1/src/vec/api.rs:1021:3
|
1021 | &mut self,
| ^^^^^^^^^ the lifetime is elided here
...
1024 | ) -> Splice<T, O, I::IntoIter>
| ^^^^^^^^^^^^^^^^^^^^^^^^^ the same lifetime is hidden here
|
= help: the same lifetime is referred to in inconsistent ways, making the signature confusing
help: use `'_` for type paths
|
1024 | ) -> Splice<'_, T, O, I::IntoIter>
| +++
Running `CARGO=/usr/local/bin/cargo CARGO_CFG_FEATURE='' CARGO_CFG_PANIC=unwind CARGO_CFG_TARGET_ABI='' CARGO_CFG_TARGET_ARCH=x86 CARGO_CFG_TARGET_ENDIAN=little CARGO_CFG_TARGET_ENV='' CARGO_CFG_TARGET_FAMILY=unix CARGO_CFG_TARGET_FEATURE=fxsr,sse,sse2 CARGO_CFG_TARGET_HAS_ATOMIC=16,32,64,8,ptr CARGO_CFG_TARGET_HAS_ATOMIC_PRIMITIVE_ALIGNMENT=16,32,8,ptr CARGO_CFG_TARGET_OS=freebsd CARGO_CFG_TARGET_POINTER_WIDTH=32 CARGO_CFG_TARGET_VENDOR=unknown CARGO_CFG_UNIX='' CARGO_ENCODED_RUSTFLAGS='-Clinker=cc' CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/Cargo.toml CARGO_PKG_AUTHORS='Erik Garrison <erik.garrison@gmail.com>:Andrea Guarracino <aguarracino@tgen.org>' CARGO_PKG_DESCRIPTION='A variation graph inducer - build pangenome graphs from pairwise alignments' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE=MIT CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=seqwish CARGO_PKG_README=README.
md CARGO_PKG_REPOSITORY='https://github.com/pangenome/seqwish' CARGO_PKG_RUST_VERSION=1.70 CARGO_PKG_VERSION=0.7.12 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=7 CARGO_PKG_VERSION_PATCH=12 CARGO_PKG_VERSION_PRE='' DEBUG=false HOST=i686-unknown-freebsd LD_LIBRARY_PATH='/wrkdirs/usr/ports/biology/seqwish/work/target/release:/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps:/usr/local/lib/rustlib/i686-unknown-freebsd/lib' NUM_JOBS=3 OPT_LEVEL=2 OUT_DIR=/wrkdirs/usr/ports/biology/seqwish/work/target/release/build/seqwish-bd719dac4c515201/out PROFILE=release RUSTC=/usr/local/bin/rustc RUSTDOC=/usr/local/bin/rustdoc TARGET=i686-unknown-freebsd /wrkdirs/usr/ports/biology/seqwish/work/target/release/build/seqwish-87f596a3a396ea27/build-script-build`
Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=portable_atomic CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/portable-atomic-1.14.0 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/portable-atomic-1.14.0/Cargo.toml CARGO_PKG_AUTHORS='' CARGO_PKG_DESCRIPTION='Portable atomic types including support for 128-bit atomics, atomic float, etc.
' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE='Apache-2.0 OR MIT' CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=portable-atomic CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/taiki-e/portable-atomic' CARGO_PKG_RUST_VERSION=1.34 CARGO_PKG_VERSION=1.14.0 CARGO_PKG_VERSION_MAJOR=1 CARGO_PKG_VERSION_MINOR=14 CARGO_PKG_VERSION_PATCH=0 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps OUT_DIR=/wrkdirs/usr/ports/biology/seqwish/work/target/release/build/portable-atomic-0f458f7e5cd179cd/out /usr/local/bin/rustc --crate-name portable_atomic --edition=2018 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/portable-atomic-1.14.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=2 -C panic=abort -C codegen-units=1 '--warn=clippy::unused_trait_names' --warn=unreachable_pub --warn=unnameable_types --warn=unexpected_cf
gs '--warn=clippy::undocumented_unsafe_blocks' '--warn=clippy::transmute_undefined_repr' '--warn=clippy::trailing_empty_array' --warn=single_use_lifetimes --warn=rust_2018_idioms '--warn=clippy::pedantic' --warn=non_ascii_idents '--warn=clippy::inline_asm_x86_att_syntax' --warn=improper_ctypes_definitions --warn=improper_ctypes --warn=deprecated_safe '--warn=clippy::default_union_representation' '--warn=clippy::as_underscore' '--warn=clippy::as_ptr_cast_mut' '--warn=clippy::all' '--allow=clippy::type_complexity' '--allow=clippy::too_many_lines' '--allow=clippy::too_many_arguments' '--allow=clippy::struct_field_names' '--allow=clippy::struct_excessive_bools' '--allow=clippy::single_match_else' '--allow=clippy::single_match' '--allow=clippy::similar_names' '--allow=clippy::range_plus_one' '--allow=clippy::nonminimal_bool' '--allow=clippy::naive_bytecount' '--allow=clippy::module_name_repetitions' '--allow=clippy::missing_errors_doc' '--allow=clippy::manual_range_contains' '--a
llow=clippy::manual_assert' '--allow=clippy::incompatible_msrv' '--allow=clippy::float_cmp' '--allow=clippy::doc_markdown' '--allow=clippy::declare_interior_mutable_const' '--allow=clippy::collapsible_match' '--allow=clippy::cast_lossless' '--allow=clippy::borrow_as_ptr' '--allow=clippy::bool_assert_comparison' --check-cfg 'cfg(target_arch,values("xtensa"))' --check-cfg 'cfg(target_arch,values("amdgpu"))' --check-cfg 'cfg(target_arch,values("loongarch32"))' --check-cfg 'cfg(target_os,values("trusty"))' --check-cfg 'cfg(target_os,values("psx"))' --check-cfg 'cfg(target_env,values("psx"))' --check-cfg 'cfg(target_feature,values("lse2","lse128","rcpc3"))' --check-cfg 'cfg(target_feature,values("quadword-atomics"))' --check-cfg 'cfg(target_feature,values("zaamo","zabha"))' --check-cfg 'cfg(target_feature,values("zacas"))' --check-cfg 'cfg(target_feature,values("ztso"))' --check-cfg 'cfg(target_feature,values("miscellaneous-extensions-3"))' --check-cfg 'cfg(target_pointer_width,v
alues("128"))' --check-cfg 'cfg(portable_atomic_no_outline_atomics,portable_atomic_outline_atomics,portable_atomic_unstable_f16,portable_atomic_unstable_f128)' --check-cfg 'cfg(portable_atomic_test_detect_false,portable_atomic_test_no_std_static_assert_ffi,qemu,valgrind,valgrind_cross)' --cfg 'feature="default"' --cfg 'feature="fallback"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("critical-section", "default", "disable-fiq", "fallback", "float", "force-amo", "require-cas", "s-mode", "serde", "std", "unsafe-assume-privileged", "unsafe-assume-single-core"))' -C metadata=be054fcc92720805 -C extra-filename=-e9cd0995a1a19746 --out-dir /wrkdirs/usr/ports/biology/seqwish/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps --cap-lints warn -C linker=cc --check-cfg 'cfg(target_feature,values("lsfe","fast-serialization","load-store-on-cond","distinct-ops","rmw"))' --check-cfg 'cfg(portable_atomic_ato
mic_intrinsics,portable_atomic_disable_fiq,portable_atomic_force_amo,portable_atomic_ll_sc_rmw,portable_atomic_no_asm,portable_atomic_no_asm_maybe_uninit,portable_atomic_no_asm_syscall,portable_atomic_no_atomic_64,portable_atomic_no_atomic_cas,portable_atomic_no_atomic_load_store,portable_atomic_no_atomic_min_max,portable_atomic_no_cfg_target_has_atomic,portable_atomic_no_cmpxchg16b_intrinsic,portable_atomic_no_cmpxchg16b_target_feature,portable_atomic_no_const_mut_refs,portable_atomic_no_const_raw_ptr_deref,portable_atomic_no_const_transmute,portable_atomic_no_core_unwind_safe,portable_atomic_no_diagnostic_namespace,portable_atomic_no_strict_provenance,portable_atomic_no_strict_provenance_atomic_ptr,portable_atomic_no_stronger_failure_ordering,portable_atomic_no_track_caller,portable_atomic_no_unsafe_op_in_unsafe_fn,portable_atomic_pre_llvm_16,portable_atomic_pre_llvm_18,portable_atomic_pre_llvm_20,portable_atomic_s_mode,portable_atomic_sanitize_thread,portable_atomic_targe
t_feature,portable_atomic_unsafe_assume_privileged,portable_atomic_unsafe_assume_single_core,portable_atomic_unstable_asm,portable_atomic_unstable_asm_experimental_arch,portable_atomic_unstable_cfg_target_has_atomic,portable_atomic_unstable_isa_attribute)' --check-cfg 'cfg(portable_atomic_target_feature,values("cmpxchg16b","distinct-ops","fast-serialization","load-store-on-cond","lse","lse128","lse2","lsfe","mclass","miscellaneous-extensions-3","quadword-atomics","rcpc3","rmw","v6","v7","zaamo","zabha","zacas"))'`
Compiling sucds v0.8.3
Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=sucds CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/Cargo.toml CARGO_PKG_AUTHORS='Shunsuke Kanda (kampersanda) <shnsk.knd@gmail.com>' CARGO_PKG_DESCRIPTION='Succinct data structures in Rust' CARGO_PKG_HOMEPAGE='https://github.com/kampersanda/sucds' CARGO_PKG_LICENSE='MIT OR Apache-2.0' CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=sucds CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/kampersanda/sucds' CARGO_PKG_RUST_VERSION=1.61.0 CARGO_PKG_VERSION=0.8.3 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=8 CARGO_PKG_VERSION_PATCH=3 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps /usr/local/bin/rustc --crate-name sucds --edition=2018 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib
.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=2 -C panic=abort -C codegen-units=1 --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "intrinsics", "std"))' -C metadata=fe10c699da55b6d8 -C extra-filename=-1937f26b59ab3ad6 --out-dir /wrkdirs/usr/ports/biology/seqwish/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps --extern anyhow=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libanyhow-106d16ee4e4303d6.rmeta --extern num_traits=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libnum_traits-9b200446b07a8516.rmeta --cap-lints warn -C linker=cc`
error: `target_pointer_width` must be 64
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:51:1
|
51 | compile_error!("`target_pointer_width` must be 64");
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
error[E0432]: unresolved import `darray`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors.rs:93:9
|
93 | pub use darray::DArray;
| ^^^^^^ use of unresolved module or unlinked crate `darray`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors/darray.rs, use `mod darray` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod darray;
|
error[E0432]: unresolved import `rank9sel`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors.rs:94:9
|
94 | pub use rank9sel::Rank9Sel;
| ^^^^^^^^ use of unresolved module or unlinked crate `rank9sel`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors/rank9sel.rs, use `mod rank9sel` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod rank9sel;
|
error[E0432]: unresolved import `sarray`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors.rs:95:9
|
95 | pub use sarray::SArray;
| ^^^^^^ use of unresolved module or unlinked crate `sarray`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/bit_vectors/sarray.rs, use `mod sarray` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod sarray;
|
error[E0432]: unresolved import `wavelet_matrix`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/char_sequences.rs:37:9
|
37 | pub use wavelet_matrix::WaveletMatrix;
| ^^^^^^^^^^^^^^ use of unresolved module or unlinked crate `wavelet_matrix`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/char_sequences/wavelet_matrix.rs, use `mod wavelet_matrix` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod wavelet_matrix;
|
error[E0432]: unresolved import `compact_vector`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors.rs:86:9
|
86 | pub use compact_vector::CompactVector;
| ^^^^^^^^^^^^^^ use of unresolved module or unlinked crate `compact_vector`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors/compact_vector.rs, use `mod compact_vector` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod compact_vector;
|
error[E0432]: unresolved import `dacs_byte`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors.rs:87:9
|
87 | pub use dacs_byte::DacsByte;
| ^^^^^^^^^ use of unresolved module or unlinked crate `dacs_byte`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors/dacs_byte.rs, use `mod dacs_byte` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod dacs_byte;
|
error[E0432]: unresolved import `dacs_opt`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors.rs:88:9
|
88 | pub use dacs_opt::DacsOpt;
| ^^^^^^^^ use of unresolved module or unlinked crate `dacs_opt`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors/dacs_opt.rs, use `mod dacs_opt` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod dacs_opt;
|
error[E0432]: unresolved import `prefix_summed_elias_fano`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors.rs:89:9
|
89 | pub use prefix_summed_elias_fano::PrefixSummedEliasFano;
| ^^^^^^^^^^^^^^^^^^^^^^^^ use of unresolved module or unlinked crate `prefix_summed_elias_fano`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/int_vectors/prefix_summed_elias_fano.rs, use `mod prefix_summed_elias_fano` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod prefix_summed_elias_fano;
|
error[E0432]: unresolved import `elias_fano`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/mii_sequences.rs:36:9
|
36 | pub use elias_fano::EliasFano;
| ^^^^^^^^^^ use of unresolved module or unlinked crate `elias_fano`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/mii_sequences/elias_fano.rs, use `mod elias_fano` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod elias_fano;
|
error[E0432]: unresolved import `elias_fano`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/mii_sequences.rs:37:9
|
37 | pub use elias_fano::EliasFanoBuilder;
| ^^^^^^^^^^ use of unresolved module or unlinked crate `elias_fano`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/mii_sequences/elias_fano.rs, use `mod elias_fano` in this file to declare the module
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:50:1
|
50 + mod elias_fano;
|
error[E0432]: unresolved import `serial`
--> /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/lib.rs:62:9
|
62 | pub use serial::Serializable;
| ^^^^^^ use of unresolved module or unlinked crate `serial`
|
help: to make use of source file /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/src/serial.rs, use `mod serial` in this file to declare the module
|
50 + mod serial;
|
For more information about this error, try `rustc --explain E0432`.
warning: `bitvec` (lib) generated 298 warnings
Compiling parking_lot v0.12.5
Running `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=parking_lot CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/parking_lot-0.12.5 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/parking_lot-0.12.5/Cargo.toml CARGO_PKG_AUTHORS='Amanieu d'\''Antras <amanieu@gmail.com>' CARGO_PKG_DESCRIPTION='More compact and efficient implementations of the standard synchronization primitives.' CARGO_PKG_HOMEPAGE='' CARGO_PKG_LICENSE='MIT OR Apache-2.0' CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=parking_lot CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/Amanieu/parking_lot' CARGO_PKG_RUST_VERSION=1.71 CARGO_PKG_VERSION=0.12.5 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=12 CARGO_PKG_VERSION_PATCH=5 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps /usr/local/bin/rustc --crate-name parking_lot --edition=2021 /wrkdirs/usr/ports/biology/seqwish/work/
seqwish-0.7.12/vendor/parking_lot-0.12.5/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=2 -C panic=abort -C codegen-units=1 --cfg 'feature="default"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("arc_lock", "deadlock_detection", "default", "hardware-lock-elision", "nightly", "owning_ref", "send_guard", "serde"))' -C metadata=ab3c5cb439287acf -C extra-filename=-2d9754cfad86da43 --out-dir /wrkdirs/usr/ports/biology/seqwish/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps --extern lock_api=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/liblock_api-e977377260691c9a.rmeta --extern parking_lot_core=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libparking_lot_core-dfbce41caca435ea.rmeta --cap-lints warn -C linker=cc`
error: could not compile `sucds` (lib) due to 12 previous errors
Caused by:
process didn't exit successfully: `CARGO=/usr/local/bin/cargo CARGO_CRATE_NAME=sucds CARGO_MANIFEST_DIR=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3 CARGO_MANIFEST_PATH=/wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/vendor/sucds-0.8.3/Cargo.toml CARGO_PKG_AUTHORS='Shunsuke Kanda (kampersanda) <shnsk.knd@gmail.com>' CARGO_PKG_DESCRIPTION='Succinct data structures in Rust' CARGO_PKG_HOMEPAGE='https://github.com/kampersanda/sucds' CARGO_PKG_LICENSE='MIT OR Apache-2.0' CARGO_PKG_LICENSE_FILE='' CARGO_PKG_NAME=sucds CARGO_PKG_README=README.md CARGO_PKG_REPOSITORY='https://github.com/kampersanda/sucds' CARGO_PKG_RUST_VERSION=1.61.0 CARGO_PKG_VERSION=0.8.3 CARGO_PKG_VERSION_MAJOR=0 CARGO_PKG_VERSION_MINOR=8 CARGO_PKG_VERSION_PATCH=3 CARGO_PKG_VERSION_PRE='' LD_LIBRARY_PATH=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps /usr/local/bin/rustc --crate-name sucds --edition=2018 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-0.7.12/ven
dor/sucds-0.8.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C opt-level=2 -C panic=abort -C codegen-units=1 --cfg 'feature="default"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("default", "intrinsics", "std"))' -C metadata=fe10c699da55b6d8 -C extra-filename=-1937f26b59ab3ad6 --out-dir /wrkdirs/usr/ports/biology/seqwish/work/target/release/deps -C strip=symbols -L dependency=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps --extern anyhow=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libanyhow-106d16ee4e4303d6.rmeta --extern num_traits=/wrkdirs/usr/ports/biology/seqwish/work/target/release/deps/libnum_traits-9b200446b07a8516.rmeta --cap-lints warn -C linker=cc` (exit status: 1)
warning: build failed, waiting for other jobs to finish...
*** Error code 101
Stop.
make: stopped making "build" in /usr/ports/biology/seqwish