[package - 144i386-default][science/py-abipy] Failed for py312-abipy-1.0.0 in run-depends
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Date: Sun, 27 Sep 2026 10:47:52 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy18/data/144i386-default/865889dac0a8/logs/py312-abipy-1.0.0.log
Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=144i386-default&build=865889dac0a8
Log:
=>> Building science/py-abipy
build started at Sun Sep 27 10:47:28 UTC 2026
port directory: /usr/ports/science/py-abipy
package name: py312-abipy-1.0.0
building for: FreeBSD 144i386-default-job-05 14.4-RELEASE-p9 FreeBSD 14.4-RELEASE-p9 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1984 May 12 01:01 /usr/ports/science/py-abipy/Makefile
Ports top last git commit: 865889dac0a8ac2b2423e00abaa263e49708699e
Ports top unclean checkout: no
Port dir last git commit: 7a4b86e3e77949764b513156c962bc35d4e7d27e
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.8-3-gd92fb7c0
Host OSVERSION: 1600022
Jail OSVERSION: 1404000
Job Id: 05
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yuri@FreeBSD.org
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--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
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PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-abipy/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-abipy/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-abipy/work-py312/.cache HOME=/wrkdirs/usr/ports/science/py-abipy/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-abipy/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-abipy/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--End PLIST_SUB--
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MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
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GID=0
UID=0
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file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py312-abipy-1.0.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.8.4.pkg
[144i386-default-job-05] Installing pkg-2.8.4...
[144i386-default-job-05] Extracting pkg-2.8.4: .......... done
===> py312-abipy-1.0.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py312-abipy-1.0.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by py312-abipy-1.0.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by py312-abipy-1.0.0 for building
=> SHA256 Checksum OK for abinit-abipy-v1.0.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv2 accepted by the user
===> Fetching all distfiles required by py312-abipy-1.0.0 for building
===> Extracting for py312-abipy-1.0.0
=> SHA256 Checksum OK for abinit-abipy-v1.0.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py312-abipy-1.0.0
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py312-abipy-1.0.0 depends on package: py312-setuptools>=63.1.0 - not found
===> Installing existing package /packages/All/py312-setuptools-63.1.0_3.pkg
[144i386-default-job-05] Installing py312-setuptools-63.1.0_3...
[144i386-default-job-05] `-- Installing python312-3.12.14_1...
[144i386-default-job-05] | `-- Installing expat-2.8.4...
[144i386-default-job-05] | `-- Extracting expat-2.8.4: .......... done
[144i386-default-job-05] | `-- Installing gettext-runtime-1.0_1...
[144i386-default-job-05] | | `-- Installing indexinfo-0.3.1_1...
[144i386-default-job-05] | | `-- Extracting indexinfo-0.3.1_1: .... done
[144i386-default-job-05] | `-- Extracting gettext-runtime-1.0_1: .......... done
[144i386-default-job-05] | `-- Installing libffi-3.8.0...
[144i386-default-job-05] | `-- Extracting libffi-3.8.0: .......... done
[144i386-default-job-05] | `-- Installing mpdecimal-4.0.1...
[144i386-default-job-05] | `-- Extracting mpdecimal-4.0.1: .......... done
[144i386-default-job-05] | `-- Installing readline-8.3.6...
[144i386-default-job-05] | `-- Extracting readline-8.3.6: .......... done
[144i386-default-job-05] `-- Extracting python312-3.12.14_1: .......... done
[144i386-default-job-05] Extracting py312-setuptools-63.1.0_3: .......... done
=====
Message from python312-3.12.14_1:
<snip>
[144i386-default-job-05] | | | `-- Installing freexl-2.0.0...
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[144i386-default-job-05] | | | `-- Extracting freexl-2.0.0: .......... done
[144i386-default-job-05] | | | `-- Installing geos-3.15.0...
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[144i386-default-job-05] | | | `-- Installing json-c-0.19_1...
[144i386-default-job-05] | | | `-- Extracting json-c-0.19_1: .......... done
[144i386-default-job-05] | | | `-- Installing libgeotiff-1.7.4_2...
[144i386-default-job-05] | | | `-- Installing proj-9.8.1,1...
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[144i386-default-job-05] | | | `-- Extracting libgeotiff-1.7.4_2: .......... done
[144i386-default-job-05] | | | `-- Installing libkml-1.3.0_31...
[144i386-default-job-05] | | | `-- Installing boost-libs-1.91.0...
[144i386-default-job-05] | | | | `-- Installing icu-76.1,1...
[144i386-default-job-05] | | | | `-- Extracting icu-76.1,1: .......... done
[144i386-default-job-05] | | | `-- Extracting boost-libs-1.91.0: .......... done
[144i386-default-job-05] | | | `-- Installing uriparser-1.0.2...
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[144i386-default-job-05] | | | `-- Extracting libkml-1.3.0_31: .......... done
[144i386-default-job-05] | | | `-- Installing poppler-26.04.0_1...
[144i386-default-job-05] | | | `-- Installing gpgme-2.1.2...
[144i386-default-job-05] | | | | `-- Installing gnupg-2.5.21...
[144i386-default-job-05] | | | | `-- Installing gnutls-3.8.13...
[144i386-default-job-05] | | | | | `-- Installing libtasn1-4.21.0...
[144i386-default-job-05] | | | | | `-- Extracting libtasn1-4.21.0: .......... done
[144i386-default-job-05] | | | | | `-- Installing nettle-3.10.2...
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[144i386-default-job-05] | | | | | `-- Installing p11-kit-0.26.5_1...
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[144i386-default-job-05] | | | | `-- Extracting gnutls-3.8.13: .......... done
[144i386-default-job-05] | | | | `-- Installing libassuan-3.0.2...
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[144i386-default-job-05] | | | | `-- Installing libksba-1.8.1...
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[144i386-default-job-05] | | | | `-- Installing npth-1.8...
[144i386-default-job-05] | | | | `-- Extracting npth-1.8: ......... done
[144i386-default-job-05] | | | | `-- Installing pinentry-1.3.3...
[144i386-default-job-05] | | | | | `-- Installing pinentry-curses-1.3.3...
[144i386-default-job-05] | | | | | `-- Extracting pinentry-curses-1.3.3: .... done
[144i386-default-job-05] | | | | `-- Extracting pinentry-1.3.3: ..... done
[144i386-default-job-05] | | | | `-- Extracting gnupg-2.5.21: .......... done
[144i386-default-job-05] | | | `-- Extracting gpgme-2.1.2: .......... done
[144i386-default-job-05] | | | `-- Installing gpgmepp-2.1.0...
[144i386-default-job-05] | | | `-- Extracting gpgmepp-2.1.0: .......... done
[144i386-default-job-05] | | | `-- Installing nspr-4.39...
[144i386-default-job-05] | | | `-- Extracting nspr-4.39: .......... done
[144i386-default-job-05] | | | `-- Installing nss-3.130...
[144i386-default-job-05] | | | `-- Extracting nss-3.130: .......... done
[144i386-default-job-05] | | | `-- Installing poppler-data-0.4.12...
[144i386-default-job-05] | | | `-- Extracting poppler-data-0.4.12: .......... done
[144i386-default-job-05] | | | `-- Extracting poppler-26.04.0_1: .......... done
[144i386-default-job-05] | | | `-- Installing postgresql18-client-18.6...
[144i386-default-job-05] | | | `-- Extracting postgresql18-client-18.6: .......... done
[144i386-default-job-05] | | | `-- Installing sfcgal-2.3.0_1...
[144i386-default-job-05] | | | `-- Extracting sfcgal-2.3.0_1: .......... done
[144i386-default-job-05] | | | `-- Installing spatialite-5.1.0_6...
[144i386-default-job-05] | | | `-- Installing librttopo-1.1.0...
[144i386-default-job-05] | | | `-- Extracting librttopo-1.1.0: .......... done
[144i386-default-job-05] | | | `-- Extracting spatialite-5.1.0_6: .......... done
[144i386-default-job-05] | | | `-- Installing xerces-c3-3.3.0...
[144i386-default-job-05] | | | `-- Extracting xerces-c3-3.3.0: .......... done
[144i386-default-job-05] | | `-- Extracting gdal-3.13.3: .......... done
[144i386-default-job-05] | | `-- Extracting py312-gdal-3.13.3: .......... done
[144i386-default-job-05] | | `-- Installing py312-pydot-4.0.1...
[144i386-default-job-05] | | `-- Installing graphviz-16.1.0...
[144i386-default-job-05] | | | `-- Installing cairo-1.18.2,3...
[144i386-default-job-05] | | | `-- Installing lzo2-2.10_2...
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[144i386-default-job-05] | | | `-- Installing pixman-0.46.4...
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[144i386-default-job-05] | | | `-- Extracting cairo-1.18.2,3: .......... done
[144i386-default-job-05] | | | `-- Installing libICE-1.1.2,1...
[144i386-default-job-05] | | | `-- Extracting libICE-1.1.2,1: .......... done
[144i386-default-job-05] | | | `-- Installing libSM-1.2.6,1...
[144i386-default-job-05] | | | `-- Extracting libSM-1.2.6,1: .......... done
[144i386-default-job-05] | | | `-- Installing libXaw-1.0.16,2...
[144i386-default-job-05] | | | `-- Installing libXmu-1.3.1,1...
[144i386-default-job-05] | | | | `-- Installing libXt-1.3.1,1...
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[144i386-default-job-05] | | | `-- Installing libXpm-3.5.19...
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[144i386-default-job-05] | | | `-- Installing libgd-2.3.3_13,1...
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[144i386-default-job-05] | | | `-- Installing libltdl-2.6.2...
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[144i386-default-job-05] | | | `-- Installing pango-1.57.1...
[144i386-default-job-05] | | | `-- Installing libthai-0.1.30...
[144i386-default-job-05] | | | | `-- Installing libdatrie-0.2.14_1...
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[144i386-default-job-05] | | `-- Extracting graphviz-16.1.0: .......... done
[144i386-default-job-05] | | `-- Extracting py312-pydot-4.0.1: .......... done
[144i386-default-job-05] | | `-- Installing py312-pygraphviz-1.6_2...
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[144i386-default-job-05] | | `-- Installing py312-scikit-sparse-0.5.0...
[144i386-default-job-05] | | `-- Installing suitesparse-amd-3.3.4...
[144i386-default-job-05] | | | `-- Installing suitesparse-config-7.14.1...
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[144i386-default-job-05] | | `-- Installing suitesparse-btf-2.3.3...
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[144i386-default-job-05] | | `-- Installing suitesparse-camd-3.3.5...
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[144i386-default-job-05] | | `-- Installing suitesparse-ccolamd-3.3.5...
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[144i386-default-job-05] | | `-- Installing suitesparse-cholmod-5.3.5...
[144i386-default-job-05] | | | `-- Installing suitesparse-colamd-3.3.5...
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[144i386-default-job-05] | | `-- Installing suitesparse-klu-2.3.6...
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[144i386-default-job-05] | | `-- Installing suitesparse-spqr-4.3.6_1...
[144i386-default-job-05] | | `-- Extracting suitesparse-spqr-4.3.6_1: .......... done
[144i386-default-job-05] | | `-- Installing suitesparse-umfpack-6.3.8...
[144i386-default-job-05] | | `-- Extracting suitesparse-umfpack-6.3.8: .......... done
[144i386-default-job-05] | | `-- Extracting py312-scikit-sparse-0.5.0: .......... done
[144i386-default-job-05] | `-- Extracting py312-networkx-3.6_2,2: .......... done
[144i386-default-job-05] | `-- Installing py312-palettable-3.3.3...
[144i386-default-job-05] | `-- Extracting py312-palettable-3.3.3: .......... done
[144i386-default-job-05] | `-- Installing py312-sympy-1.14.0_1...
[144i386-default-job-05] | | `-- Installing py312-mpmath-1.4.1...
[144i386-default-job-05] | | `-- Installing py312-gmpy2-2.3.1...
[144i386-default-job-05] | | `-- Extracting py312-gmpy2-2.3.1: .......... done
[144i386-default-job-05] | | `-- Extracting py312-mpmath-1.4.1: .......... done
[144i386-default-job-05] | `-- Extracting py312-sympy-1.14.0_1: .......... done
[144i386-default-job-05] | `-- Installing py312-tabulate-0.10.0...
[144i386-default-job-05] | `-- Extracting py312-tabulate-0.10.0: .......... done
[144i386-default-job-05] | `-- Installing py312-uncertainties-3.2.4...
[144i386-default-job-05] | | `-- Installing py312-future-1.0.0...
[144i386-default-job-05] | | `-- Extracting py312-future-1.0.0: .......... done
[144i386-default-job-05] | `-- Extracting py312-uncertainties-3.2.4: .......... done
[144i386-default-job-05] `-- Extracting py312-pymatgen-core-2026.9.23: .......... done
[144i386-default-job-05] `-- Installing py312-seekpath-2.2.1_2...
[144i386-default-job-05] `-- Extracting py312-seekpath-2.2.1_2: .......... done
pkg-static: py312-pymatgen-2026.5.4_2 conflicts with py312-pymatgen-core-2026.9.23 (installs files into the same place). Problematic file: /usr/local/bin/pmg
Failed to install the following 1 package(s): /packages/All/py312-pymatgen-2026.5.4_2.pkg
=====
Message from boost-libs-1.91.0:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
=====
Message from postgresql18-client-18.6:
--
The PostgreSQL port has a collection of "side orders":
postgresql-docs
For all of the html documentation
p5-Pg
A perl5 API for client access to PostgreSQL databases.
postgresql-tcltk
If you want tcl/tk client support.
postgresql-jdbc
For Java JDBC support.
postgresql-odbc
For client access from unix applications using ODBC as access
method. Not needed to access unix PostgreSQL servers from Win32
using ODBC. See below.
ruby-postgres, py-psycopg
For client access to PostgreSQL databases using the ruby & python
languages.
postgresql-plperl, postgresql-pltcl & postgresql-plruby
For using perl5, tcl & ruby as procedural languages.
postgresql-contrib
Lots of contributed utilities, postgresql functions and
datatypes. There you find pg_standby, pgcrypto and many other cool
things.
etc...
=====
Message from py312-future-1.0.0:
--
===> NOTICE:
This port is deprecated; you may wish to reconsider installing it:
Outlived it's purpose.
It is scheduled to be removed on or after 2026-12-31.
*** Error code 1
Stop.
make: stopped making "run-depends" in /usr/ports/science/py-abipy