[package - 151amd64-default][misc/snakemake] Failed for snakemake-9.27.0 in run-depends
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Date: Sat, 17 Oct 2026 00:12:51 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy23/data/151amd64-default/8e18e3939be9/logs/snakemake-9.27.0.log Build URL: https://pkg-status.freebsd.org/beefy23/build.html?mastername=151amd64-default&build=8e18e3939be9 Log: =>> Building misc/snakemake build started at Sat Oct 17 00:12:44 UTC 2026 port directory: /usr/ports/misc/snakemake package name: snakemake-9.27.0 building for: FreeBSD 151amd64-default-job-25 15.1-RELEASE-p5 FreeBSD 15.1-RELEASE-p5 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 3587 Sep 17 01:01 /usr/ports/misc/snakemake/Makefile Ports top last git commit: 8e18e3939be9e4ea489d5504d12de91827b8498b Ports top unclean checkout: no Port dir last git commit: 55cf64971f9aae5d0e42a28ae03d604da2732e4e Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8-3-gd92fb7c0 Host OSVERSION: 1600022 Jail OSVERSION: 1501000 Job Id: 25 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1501000 UNAME_v=FreeBSD 15.1-RELEASE-p5 UNAME_r=15.1-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8-3-gd92fb7c0 MASTERMNT=/usr/local/poudriere/data/.m/151amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/151amd64-default/25/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=151amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/151amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8-3-gd92fb7c0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/snakemake/work/.cache HOME=/wrkdirs/usr/ports/misc/snakemake/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/snakemake/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/snakemake/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/snakemake/work XDG_CACHE_HOME=/wrkdirs/usr/ports/misc/snakemake/work/.cache HOME=/wrkdirs/usr/ports/misc/snakemake/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/snakemake/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/misc/snakemake/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.12 PYTHON_LIBDIR=lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" OSREL=15.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/snakemake" EXAMPLESDIR="share/examples/snakemake" DATADIR="share/snakemake" WWWDIR="www/snakemake" ETCDIR="etc/snakemake" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/snakemake DOCSDIR=/usr/local/share/doc/snakemake EXAMPLESDIR=/usr/local/share/examples/snakemake WWWDIR=/usr/local/www/snakemake ETCDIR=/usr/local/etc/snakemake --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> snakemake-9.27.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.8.4.pkg [151amd64-default-job-25] Installing pkg-2.8.4... [151amd64-default-job-25] Extracting pkg-2.8.4: .......... done ===> snakemake-9.27.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of snakemake-9.27.0 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by snakemake-9.27.0 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by snakemake-9.27.0 for building => SHA256 Checksum OK for snakemake-9.27.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License MIT accepted by the user ===> Fetching all distfiles required by snakemake-9.27.0 for building ===> Extracting for snakemake-9.27.0 => SHA256 Checksum OK for snakemake-9.27.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for snakemake-9.27.0 ===> Applying FreeBSD patches for snakemake-9.27.0 from /usr/ports/misc/snakemake/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> snakemake-9.27.0 depends on package: py312-setuptools>0 - not found ===> Installing existing package /packages/All/py312-setuptools-63.1.0_3.pkg [151amd64-default-job-25] Installing py312-setuptools-63.1.0_3... [151amd64-default-job-25] `-- Installing python312-3.12.15... [151amd64-default-job-25] | `-- Installing expat-2.9.0... [151amd64-default-job-25] | `-- Extracting expat-2.9.0: .......... done [151amd64-default-job-25] | `-- Installing gettext-runtime-1.0_1... [151amd64-default-job-25] | | `-- Installing indexinfo-0.3.1_1... [151amd64-default-job-25] | | `-- Extracting indexinfo-0.3.1_1: .... done [151amd64-default-job-25] | `-- Extracting gettext-runtime-1.0_1: .......... done [151amd64-default-job-25] | `-- Installing libffi-3.8.0... [151amd64-default-job-25] | `-- Extracting libffi-3.8.0: .......... done [151amd64-default-job-25] | `-- Installing mpdecimal-4.0.1... [151amd64-default-job-25] | `-- Extracting mpdecimal-4.0.1: .......... done [151amd64-default-job-25] | `-- Installing readline-8.3.6... [151amd64-default-job-25] | `-- Extracting readline-8.3.6: .......... done [151amd64-default-job-25] `-- Extracting python312-3.12.15: .......... done [151amd64-default-job-25] Extracting py312-setuptools-63.1.0_3: .......... done ===== Message from python312-3.12.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: <snip> ===> Installing existing package /packages/All/py312-conda-inject-1.3.2.pkg [151amd64-default-job-25] Installing py312-conda-inject-1.3.2... [151amd64-default-job-25] `-- Installing py312-pyyaml-6.0.3_1... [151amd64-default-job-25] | `-- Installing libyaml-0.2.5... [151amd64-default-job-25] | `-- Extracting libyaml-0.2.5: ......... done [151amd64-default-job-25] `-- Extracting py312-pyyaml-6.0.3_1: .......... done [151amd64-default-job-25] Extracting py312-conda-inject-1.3.2: .......... done ===> snakemake-9.27.0 depends on package: py312-conda-inject>=1.3.1 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-configargparse>0 - not found ===> Installing existing package /packages/All/py312-configargparse-1.7.7.pkg [151amd64-default-job-25] Installing py312-configargparse-1.7.7... [151amd64-default-job-25] Extracting py312-configargparse-1.7.7: .......... done ===> snakemake-9.27.0 depends on package: py312-configargparse>0 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-connection_pool>=0.0.3 - not found ===> Installing existing package /packages/All/py312-connection_pool-0.0.3_1.pkg [151amd64-default-job-25] Installing py312-connection_pool-0.0.3_1... [151amd64-default-job-25] Extracting py312-connection_pool-0.0.3_1: .......... done ===> snakemake-9.27.0 depends on package: py312-connection_pool>=0.0.3 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-docutils>=0.20 - not found ===> Installing existing package /packages/All/py312-docutils-0.22.4,1.pkg [151amd64-default-job-25] Installing py312-docutils-0.22.4,1... [151amd64-default-job-25] Extracting py312-docutils-0.22.4,1: .......... done ===> snakemake-9.27.0 depends on package: py312-docutils>=0.20 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-dpath>=2.1.6 - not found ===> Installing existing package /packages/All/py312-dpath-2.2.0.pkg [151amd64-default-job-25] Installing py312-dpath-2.2.0... [151amd64-default-job-25] Extracting py312-dpath-2.2.0: .......... done ===> snakemake-9.27.0 depends on package: py312-dpath>=2.1.6 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-gitpython>0 - not found ===> Installing existing package /packages/All/py312-gitpython-3.1.62.pkg [151amd64-default-job-25] Installing py312-gitpython-3.1.62... [151amd64-default-job-25] `-- Installing py312-gitdb-4.0.12... [151amd64-default-job-25] | `-- Installing py312-smmap-5.0.3... [151amd64-default-job-25] | `-- Extracting py312-smmap-5.0.3: .......... done [151amd64-default-job-25] `-- Extracting py312-gitdb-4.0.12: .......... done [151amd64-default-job-25] Extracting py312-gitpython-3.1.62: .......... done ===> snakemake-9.27.0 depends on package: py312-gitpython>0 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-humanfriendly>0 - not found ===> Installing existing package /packages/All/py312-humanfriendly-10.0_1.pkg [151amd64-default-job-25] Installing py312-humanfriendly-10.0_1... [151amd64-default-job-25] Extracting py312-humanfriendly-10.0_1: .......... done ===> snakemake-9.27.0 depends on package: py312-humanfriendly>0 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-immutables>0 - not found ===> Installing existing package /packages/All/py312-immutables-0.21.pkg [151amd64-default-job-25] Installing py312-immutables-0.21... [151amd64-default-job-25] Extracting py312-immutables-0.21: .......... done ===> snakemake-9.27.0 depends on package: py312-immutables>0 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-Jinja2>=3.0 - not found ===> Installing existing package /packages/All/py312-Jinja2-3.1.6.pkg [151amd64-default-job-25] Installing py312-Jinja2-3.1.6... [151amd64-default-job-25] `-- Installing py312-Babel-2.18.0... [151amd64-default-job-25] `-- Extracting py312-Babel-2.18.0: .......... done [151amd64-default-job-25] `-- Installing py312-markupsafe-3.0.3... [151amd64-default-job-25] `-- Extracting py312-markupsafe-3.0.3: .......... done [151amd64-default-job-25] Extracting py312-Jinja2-3.1.6: .......... done ===> snakemake-9.27.0 depends on package: py312-Jinja2>=3.0 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-jsonschema>0 - not found ===> Installing existing package /packages/All/py312-jsonschema-4.26.0.pkg [151amd64-default-job-25] Installing py312-jsonschema-4.26.0... [151amd64-default-job-25] `-- Installing py312-attrs-26.1.0... [151amd64-default-job-25] `-- Extracting py312-attrs-26.1.0: .......... done [151amd64-default-job-25] `-- Installing py312-jsonschema-specifications-2025.9.1... [151amd64-default-job-25] | `-- Installing py312-referencing-0.37.0... [151amd64-default-job-25] | | `-- Installing py312-rpds-py-2026.6.3_1... [151amd64-default-job-25] | | `-- Extracting py312-rpds-py-2026.6.3_1: .......... done [151amd64-default-job-25] | | `-- Installing py312-typing-extensions-4.16.0... [151amd64-default-job-25] | | `-- Extracting py312-typing-extensions-4.16.0: .......... done [151amd64-default-job-25] | `-- Extracting py312-referencing-0.37.0: .......... done [151amd64-default-job-25] `-- Extracting py312-jsonschema-specifications-2025.9.1: .......... done [151amd64-default-job-25] Extracting py312-jsonschema-4.26.0: .......... done ===> snakemake-9.27.0 depends on package: py312-jsonschema>0 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-nbformat>0 - not found ===> Installing existing package /packages/All/py312-nbformat-5.11.1.pkg [151amd64-default-job-25] Installing py312-nbformat-5.11.1... [151amd64-default-job-25] `-- Installing py312-fastjsonschema-2.22.2... [151amd64-default-job-25] `-- Extracting py312-fastjsonschema-2.22.2: .......... done [151amd64-default-job-25] `-- Installing py312-jupyter-core-5.9.1_1... [151amd64-default-job-25] | `-- Installing py312-platformdirs-4.11.12... [151amd64-default-job-25] | `-- Extracting py312-platformdirs-4.11.12: .......... done [151amd64-default-job-25] | `-- Installing py312-traitlets-5.16.1... [151amd64-default-job-25] | `-- Extracting py312-traitlets-5.16.1: .......... done [151amd64-default-job-25] `-- Extracting py312-jupyter-core-5.9.1_1: .......... done [151amd64-default-job-25] `-- Installing py312-sqlite3-3.12.15_10... [151amd64-default-job-25] | `-- Installing sqlite3-3.53.4,1... [151amd64-default-job-25] | | `-- Installing libedit-3.1.20260512,1... [151amd64-default-job-25] | | `-- Extracting libedit-3.1.20260512,1: .......... done [151amd64-default-job-25] | `-- Extracting sqlite3-3.53.4,1: .......... done [151amd64-default-job-25] `-- Extracting py312-sqlite3-3.12.15_10: ......... done [151amd64-default-job-25] Extracting py312-nbformat-5.11.1: .......... done ===> snakemake-9.27.0 depends on package: py312-nbformat>0 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-packaging>=24.0 - found ===> snakemake-9.27.0 depends on package: py312-platformdirs>0 - found ===> snakemake-9.27.0 depends on package: py312-psutil>0 - not found ===> Installing existing package /packages/All/py312-psutil-7.2.2_1.pkg [151amd64-default-job-25] Installing py312-psutil-7.2.2_1... [151amd64-default-job-25] Extracting py312-psutil-7.2.2_1: .......... done ===> snakemake-9.27.0 depends on package: py312-psutil>0 - found ===> Returning to build of snakemake-9.27.0 ===> snakemake-9.27.0 depends on package: py312-PuLP>=2.3.1 - not found ===> Installing existing package /packages/All/py312-pulp-4.0.0_1.pkg [151amd64-default-job-25] Installing py312-pulp-4.0.0_1... [151amd64-default-job-25] `-- Installing coin-or-cbc-2.10.13_1... [151amd64-default-job-25] | `-- Installing coin-or-Clp-1.17.11... [151amd64-default-job-25] | | `-- Installing blas-3.12.1... [151amd64-default-job-25] | | `-- Installing gcc14-14.2.0_7... [151amd64-default-job-25] | | | `-- Installing binutils-2.44,1... [151amd64-default-job-25] | | | `-- Installing zstd-1.5.7_2... [151amd64-default-job-25] | | | | `-- Installing liblz4-1.10.0_2,1... [151amd64-default-job-25] | | | | `-- Extracting liblz4-1.10.0_2,1: .......... done [151amd64-default-job-25] | | | `-- Extracting zstd-1.5.7_2: .......... done [151amd64-default-job-25] | | | `-- Extracting binutils-2.44,1: .......... done [151amd64-default-job-25] | | | `-- Installing gmp-6.3.0... [151amd64-default-job-25] | | | `-- Extracting gmp-6.3.0: .......... done [151amd64-default-job-25] | | | `-- Installing mpc-1.4.1... [151amd64-default-job-25] | | | `-- Installing mpfr-4.2.2,1... [151amd64-default-job-25] | | | `-- Extracting mpfr-4.2.2,1: .......... done [151amd64-default-job-25] | | | `-- Extracting mpc-1.4.1: .......... done [151amd64-default-job-25] | | `-- Extracting gcc14-14.2.0_7: .......... done [151amd64-default-job-25] | | `-- Extracting blas-3.12.1: ........ done [151amd64-default-job-25] | | `-- Installing coin-or-CoinUtils-2.11.13_1... [151amd64-default-job-25] | | `-- Installing coin-or-Data-Netlib-1.2.11... [151amd64-default-job-25] | | `-- Extracting coin-or-Data-Netlib-1.2.11: .......... done [151amd64-default-job-25] | | `-- Installing coin-or-Data-Sample-1.2.13... [151amd64-default-job-25] | | `-- Extracting coin-or-Data-Sample-1.2.13: .......... done [151amd64-default-job-25] | | `-- Installing openblas-0.3.34_1,2... [151amd64-default-job-25] | | `-- Extracting openblas-0.3.34_1,2: .......... done [151amd64-default-job-25] | | `-- Extracting coin-or-CoinUtils-2.11.13_1: .......... done [151amd64-default-job-25] | | `-- Installing coin-or-Osi-0.108.12_1... [151amd64-default-job-25] | | `-- Extracting coin-or-Osi-0.108.12_1: .......... done [151amd64-default-job-25] | | `-- Installing coin-or-asl-2.1.0... [151amd64-default-job-25] | | `-- Extracting coin-or-asl-2.1.0: .......... done [151amd64-default-job-25] | | `-- Installing coin-or-metis-1.3.10_3... [151amd64-default-job-25] | | `-- Extracting coin-or-metis-1.3.10_3: .......... done [151amd64-default-job-25] | | `-- Installing coin-or-mumps-3.0.3_4... [151amd64-default-job-25] | | `-- Installing lapack-3.12.1... [151amd64-default-job-25] | | `-- Extracting lapack-3.12.1: .......... done [151amd64-default-job-25] | | `-- Extracting coin-or-mumps-3.0.3_4: .......... done [151amd64-default-job-25] | `-- Extracting coin-or-Clp-1.17.11: .......... done [151amd64-default-job-25] | `-- Installing coin-or-cgl-0.60.10_1... [151amd64-default-job-25] | `-- Extracting coin-or-cgl-0.60.10_1: .......... done [151amd64-default-job-25] | `-- Installing nauty-2.8.6_1,1... [151amd64-default-job-25] | `-- Extracting nauty-2.8.6_1,1: .......... done [151amd64-default-job-25] `-- Extracting coin-or-cbc-2.10.13_1: .......... done [151amd64-default-job-25] `-- Installing glpk-5.0... [151amd64-default-job-25] `-- Extracting glpk-5.0: .......... done [151amd64-default-job-25] `-- Installing py312-orloge-1.0.0... [151amd64-default-job-25] | `-- Installing py312-cpsat-logutils-1.0.0... [151amd64-default-job-25] | | `-- Installing py312-pydantic2-2.13.5... [151amd64-default-job-25] | | `-- Installing py312-annotated-types-0.8.0... [151amd64-default-job-25] | | `-- Extracting py312-annotated-types-0.8.0: .......... done [151amd64-default-job-25] | | `-- Installing py312-pydantic-core-2.46.5_1... [151amd64-default-job-25] | | `-- Extracting py312-pydantic-core-2.46.5_1: .......... done [151amd64-default-job-25] | | `-- Installing py312-typing-inspection-0.4.4_1... [151amd64-default-job-25] | | `-- Extracting py312-typing-inspection-0.4.4_1: .......... done [151amd64-default-job-25] | | `-- Extracting py312-pydantic2-2.13.5: .......... done [151amd64-default-job-25] | `-- Extracting py312-cpsat-logutils-1.0.0: .......... done [151amd64-default-job-25] `-- Extracting py312-orloge-1.0.0: .......... done [151amd64-default-job-25] Extracting py312-pulp-4.0.0_1: .......... done ===== Message from gcc14-14.2.0_7: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from glpk-5.0: -- ===> NOTICE: The glpk port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> snakemake-9.27.0 depends on package: py312-PuLP>=2.3.1 - not found *** Error code 1 Stop. make: stopped making "run-depends" in /usr/ports/misc/snakemake