[package - 151amd64-default][science/hpddm_petsc] Failed for hpddm_petsc-3.26.1 in configure
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Date: Sun, 08 Nov 2026 14:25:27 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: thierry@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy23/data/151amd64-default/20261108_0b6781e5921d/logs/hpddm_petsc-3.26.1.log
Build URL: https://pkg-status.freebsd.org/beefy23/build.html?mastername=151amd64-default&build=20261108_0b6781e5921d
Log:
=>> Building science/hpddm_petsc
build started at Sun Nov 8 11:51:03 UTC 2026
port directory: /usr/ports/science/hpddm_petsc
package name: hpddm_petsc-3.26.1
building for: FreeBSD 151amd64-default-job-42 15.1-RELEASE-p6 FreeBSD 15.1-RELEASE-p6 amd64
maintained by: thierry@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 3885 Nov 7 01:01 /usr/ports/science/hpddm_petsc/Makefile
Ports top last git commit: 0b6781e5921d0aca9e539d0ccb67c9b59a00fd97
Ports top unclean checkout: no
Port dir last git commit: 389a1660b33b48ed420072a16cae835d0cbf375e
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.8-7-gba4466e2
Host OSVERSION: 1600029
Jail OSVERSION: 1501000
Job Id: 42
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--MAINTAINER--
thierry@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--with-shared-libraries=1 --with-mpi-dir=/usr/local --with-python=1 --with-python-pkg-config=/usr/local/libdata/pkgconfig --download-slepc=/wrkdirs/usr/ports/science/hpddm_petsc/work/slepc-3.26.1.tar.gz --with-blaslapack=1 --with-hpddm=1 --with-hpddm-include=/usr/local/include/HPDDM --with-hypre=1 --with-metis=1 --with-mumps=1 --with-openblas=1 --with-scalapack=1 --with-sowing=1 --with-superlu=1 --with-superlu-include=/usr/local/include/superlu --with-superlu-lib=/usr/local/lib/libsuperlu.so FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" FFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -msse2" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -msse2" CPPFLAGS="" AR=/usr/local/bin/ar RANLIB=/usr/local/bin/ranlib MAKEFLAGS="" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc14 -L/usr/local/lib/gcc14 " LIBS="-lopenblas `pkgconf --libs mpich` -lmpifort" --with-debugging=no --x-lib
raries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
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f" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" STRIP="/usr/local/bin/strip" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" XDG_DATA_HOME=/wrkdirs/usr/ports/science/hpddm_petsc/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/hpddm_petsc/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/hpddm_petsc/work/.cache HOME=/wrkdirs/usr/ports/science/hpddm_petsc/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/hpddm_petsc/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/hpddm_petsc/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin
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--End MAKE_ENV--
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--End PLIST_SUB--
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PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hpddm_petsc DOCSDIR=/usr/local/share/doc/hpddm_petsc EXAMPLESDIR=/usr/local/share/examples/hpddm_petsc WWWDIR=/usr/local/www/hpddm_petsc ETCDIR=/usr/local/etc/hpddm_petsc
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
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---End make.conf---
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cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
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max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534
===> License BSD2CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> hpddm_petsc-3.26.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.9.0.pkg
[151amd64-default-job-42] Installing pkg-2.9.0...
[151amd64-default-job-42] Extracting pkg-2.9.0: .......... done
===> hpddm_petsc-3.26.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of hpddm_petsc-3.26.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by hpddm_petsc-3.26.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by hpddm_petsc-3.26.1 for building
=> SHA256 Checksum OK for petsc-3.26.1.tar.gz.
=> SHA256 Checksum OK for slepc-3.26.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534
===> License BSD2CLAUSE accepted by the user
===> Fetching all distfiles required by hpddm_petsc-3.26.1 for building
===> Extracting for hpddm_petsc-3.26.1
=> SHA256 Checksum OK for petsc-3.26.1.tar.gz.
=> SHA256 Checksum OK for slepc-3.26.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534
===> Patching for hpddm_petsc-3.26.1
===> Applying FreeBSD patches for hpddm_petsc-3.26.1 from /usr/ports/science/hpddm_petsc/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> hpddm_petsc-3.26.1 depends on executable: bison - not found
===> Installing existing package /packages/All/bison-3.8.2_2,1.pkg
[151amd64-default-job-42] Installing bison-3.8.2_2,1...
[151amd64-default-job-42] `-- Installing gettext-runtime-1.0_1...
[151amd64-default-job-42] | `-- Installing indexinfo-0.3.1_1...
[151amd64-default-job-42] | `-- Extracting indexinfo-0.3.1_1: .... done
[151amd64-default-job-42] `-- Extracting gettext-runtime-1.0_1: .......... done
[151amd64-default-job-42] `-- Installing libtextstyle-1.0...
[151amd64-default-job-42] `-- Extracting libtextstyle-1.0: .......... done
[151amd64-default-job-42] `-- Installing m4-1.4.21,1...
[151amd64-default-job-42] `-- Extracting m4-1.4.21,1: .......... done
[151amd64-default-job-42] Extracting bison-3.8.2_2,1: .......... done
===> hpddm_petsc-3.26.1 depends on executable: bison - found
===> Returning to build of hpddm_petsc-3.26.1
===> hpddm_petsc-3.26.1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.12_3.pkg
[151amd64-default-job-42] Installing cmake-core-3.31.12_3...
[151amd64-default-job-42] `-- Installing expat-2.10.0...
[151amd64-default-job-42] `-- Extracting expat-2.10.0: .......... done
[151amd64-default-job-42] `-- Installing jsoncpp-1.9.8...
[151amd64-default-job-42] `-- Extracting jsoncpp-1.9.8: .......... done
[151amd64-default-job-42] `-- Installing libidn2-2.3.8...
[151amd64-default-job-42] | `-- Installing libunistring-1.4.2...
<snip>
[151amd64-default-job-42] `-- Extracting py312-numpy-2.4.6_1,1: .......... done
[151amd64-default-job-42] `-- Installing py312-sympy-1.14.0_1...
[151amd64-default-job-42] | `-- Installing py312-mpmath-1.4.1...
[151amd64-default-job-42] | | `-- Installing py312-gmpy2-2.3.2...
[151amd64-default-job-42] | | `-- Extracting py312-gmpy2-2.3.2: .......... done
[151amd64-default-job-42] | `-- Extracting py312-mpmath-1.4.1: .......... done
[151amd64-default-job-42] `-- Extracting py312-sympy-1.14.0_1: .......... done
[151amd64-default-job-42] Extracting HPDDM-2.4.1_2: .......... done
=====
Message from boost-libs-1.92.0:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
=====
Message from py312-boost-libs-1.92.0:
--
You have built the Boost library with thread support.
Don't forget to add -pthread to your linker options when
linking your code.
===> hpddm_petsc-3.26.1 depends on shared library: libhpddm_c.so - found (/usr/local/lib/libhpddm_c.so)
===> Returning to build of hpddm_petsc-3.26.1
===> hpddm_petsc-3.26.1 depends on shared library: libHYPRE.so - not found
===> Installing existing package /packages/All/hypre-3.2.1.pkg
[151amd64-default-job-42] Installing hypre-3.2.1...
[151amd64-default-job-42] `-- Installing superlu-7.0.1...
[151amd64-default-job-42] | `-- Installing blas-3.12.1...
[151amd64-default-job-42] | `-- Extracting blas-3.12.1: ......... done
[151amd64-default-job-42] | `-- Installing lapack-3.12.1...
[151amd64-default-job-42] | `-- Extracting lapack-3.12.1: .......... done
[151amd64-default-job-42] `-- Extracting superlu-7.0.1: .......... done
[151amd64-default-job-42] Extracting hypre-3.2.1: .......... done
===> hpddm_petsc-3.26.1 depends on shared library: libHYPRE.so - found (/usr/local/lib/libHYPRE.so)
===> Returning to build of hpddm_petsc-3.26.1
===> hpddm_petsc-3.26.1 depends on shared library: libmetis.so - found (/usr/local/lib/libmetis.so)
===> hpddm_petsc-3.26.1 depends on shared library: libpetsc.so - not found
===> Installing existing package /packages/All/PETSc-3.26.1.pkg
[151amd64-default-job-42] Installing PETSc-3.26.1...
[151amd64-default-job-42] Extracting PETSc-3.26.1: .......... done
===> hpddm_petsc-3.26.1 depends on shared library: libpetsc.so - found (/usr/local/lib/libpetsc.so)
===> Returning to build of hpddm_petsc-3.26.1
===> hpddm_petsc-3.26.1 depends on shared library: libscalapack.so - found (/usr/local/lib/libscalapack.so)
===> hpddm_petsc-3.26.1 depends on shared library: libslepc.so - not found
===> Installing existing package /packages/All/slepc-3.26.1.pkg
[151amd64-default-job-42] Installing slepc-3.26.1...
[151amd64-default-job-42] `-- Installing blis-2.1...
[151amd64-default-job-42] `-- Extracting blis-2.1: .......... done
[151amd64-default-job-42] Extracting slepc-3.26.1: .......... done
===> hpddm_petsc-3.26.1 depends on shared library: libslepc.so - found (/usr/local/lib/libslepc.so)
===> Returning to build of hpddm_petsc-3.26.1
===> hpddm_petsc-3.26.1 depends on shared library: libsuperlu.so - found (/usr/local/lib/libsuperlu.so)
===> hpddm_petsc-3.26.1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===> hpddm_petsc-3.26.1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so)
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=nobody UID=65534 GID=65534
===> Configuring for hpddm_petsc-3.26.1
cp -f /portdistfiles/slepc-3.26.1.tar.gz /wrkdirs/usr/ports/science/hpddm_petsc/work
=============================================================================================
Configuring PETSc to compile on your system
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CC=cc. Ignoring it! Use "./configure CC=$CC" if you really
want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CXX=c++. Ignoring it! Use "./configure CXX=$CXX" if you
really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: FC=gfortran14. Ignoring it! Use "./configure FC=$FC" if you
really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: F77=gfortran14. Ignoring it! Use "./configure F77=$F77" if
you really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: F90=gfortran14. Ignoring it! Use "./configure F90=$F90" if
you really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CFLAGS=-O2 -pipe -fstack-protector-strong
-fno-strict-aliasing . Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CXXFLAGS=-O2 -pipe -fstack-protector-strong
-fno-strict-aliasing . Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: FCFLAGS=-Wl,-rpath=/usr/local/lib/gcc14. Ignoring it, since
it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: FFLAGS=-O -Wl,-rpath=/usr/local/lib/gcc14. Ignoring it, since
it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: F90FLAGS=-O -Wl,-rpath=/usr/local/lib/gcc14. Ignoring it! Use
"./configure F90FLAGS=$F90FLAGS" if you really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CPP=cpp. Ignoring it! Use "./configure CPP=$CPP" if you
really want to use this value
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: CPPFLAGS=. Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: LDFLAGS= -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc14
-L/usr/local/lib/gcc14 . Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: LIBS=-lopenblas -Wl,-rpath -Wl,/usr/local/lib
-L/usr/local/lib -lmpi -lmpifort. Ignoring it, since it's also set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: AR=/usr/local/bin/ar. Ignoring it, since it's also set on
command line
=============================================================================================
=============================================================================================
***** WARNING *****
Found environment variable: RANLIB=/usr/local/bin/ranlib. Ignoring it, since it's also
set on command line
=============================================================================================
=============================================================================================
***** WARNING *****
You are overwriting the standard PETSc compiler flags with CFLAGS="-O2 -pipe
-fstack-protector-strong -fno-strict-aliasing -msse2". Are you sure you want to do this?
Generally it is best to let PETSc ./configure determine the flags. You can use
CFLAGS+="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -msse2" to provide
additional compiler flags instead of overwriting those used by PETSc.
=============================================================================================
=============================================================================================
***** WARNING *****
You are overwriting the standard PETSc compiler flags with CXXFLAGS="-O2 -pipe
-fstack-protector-strong -fno-strict-aliasing -msse2". Are you sure you want to do
this? Generally it is best to let PETSc ./configure determine the flags. You can use
CXXFLAGS+="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -msse2" to provide
additional compiler flags instead of overwriting those used by PETSc.
=============================================================================================
=============================================================================================
***** WARNING *****
You are overwriting the standard PETSc compiler flags with
FFLAGS="-Wl,-rpath=/usr/local/lib/gcc14". Are you sure you want to do this? Generally it
is best to let PETSc ./configure determine the flags. You can use
FFLAGS+="-Wl,-rpath=/usr/local/lib/gcc14" to provide additional compiler flags instead of
overwriting those used by PETSc.
=============================================================================================
=============================================================================================
***** WARNING *****
Using default FC optimization flags "-g -O". You might consider manually setting optimal
optimization flags for your system with FOPTFLAGS="optimization flags" see
config/examples/arch-*-opt.py for examples
=============================================================================================
=============================================================================================
***** WARNING *****
mpiexec may not work on your system due to network issues. Perhaps you have VPN running
whose network settings may not work with mpiexec or your network is misconfigured
=============================================================================================
*********************************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
---------------------------------------------------------------------------------------------
Timeout: Unable to run MPI program with /usr/local/bin/mpiexec -n 1
(1) make sure this is the correct program to run MPI jobs
(2) your network may be misconfigured; see
https://petsc.org/release/faq/#mpi-network-misconfigure
(3) you may have VPN running whose network settings may not play nice with MPI
*********************************************************************************************
===> Script "configure" failed unexpectedly.
Please report the problem to thierry@FreeBSD.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/hpddm_petsc/work/petsc-3.26.1/configure.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1
Stop.
make: stopped making "configure" in /usr/ports/science/hpddm_petsc