[package - main-amd64-default][science/bagel] Failed for bagel-1.2.2.132_19 in build
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Date: Sat, 09 May 2026 08:39:09 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy24/data/main-amd64-default/p142569cd0b2b_s1bef5535c1f/logs/bagel-1.2.2.132_19.log
Build URL: https://pkg-status.freebsd.org/beefy24/build.html?mastername=main-amd64-default&build=p142569cd0b2b_s1bef5535c1f
Log:
=>> Building science/bagel
build started at Sat May 9 08:38:26 UTC 2026
port directory: /usr/ports/science/bagel
package name: bagel-1.2.2.132_19
building for: FreeBSD main-amd64-default-job-45 16.0-CURRENT FreeBSD 16.0-CURRENT 1600018 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1994 Apr 23 01:01 /usr/ports/science/bagel/Makefile
Ports top last git commit: 142569cd0b2bd7c606dce1694dbcedeadfd212db
Ports top unclean checkout: no
Port dir last git commit: b8b84d83e93192cabd9e9f7d28d20373eb95e68f
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.8
Host OSVERSION: 1600014
Jail OSVERSION: 1600018
Job Id: 45
!!! Jail is newer than host. (Jail: 1600018, Host: 1600014) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
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---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for bagel-1.2.2.132_19:
LIBXC=on: Build DFT with libxc
MPI=on: MPI (Message Passing Interface) support
SCALAPACK=on: Use ScaLapack library for parallelized linear algebra
SMITH=on: Compile SMITH generated code
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--datarootdir=/usr/local/share/bagel --with-libxc --with-mpi=openmpi --enable-scalapack --enable-smith --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" MAKE=/usr/local/bin/gmake PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/bagel/work/.cache HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/bagel/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objc
opy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" STRIP="/usr/local/bin/strip" DEFAULT_AUTOCONF=2.73 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288
--End CONFIGURE_ENV--
--MAKE_ENV--
F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/bagel/work/.cache HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/bagel/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/ob
jdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" STRIP="/usr/local/bin/strip" DEFAULT_AUTOCONF=2.73 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lscalapack -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc14 -L/usr/local/lib/gcc14 " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 " CXXSTD=c++11 BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bagel" EXAMPLESDIR="share/examples/bagel" DATADIR="share/bagel" WWWDIR="www/bagel" ETCDIR="etc/bagel"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd16 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bagel DOCSDIR=/usr/local/share/doc/bagel EXAMPLESDIR=/usr/local/share/examples/bagel WWWDIR=/usr/local/www/bagel ETCDIR=/usr/local/etc/bagel
--End SUB_LIST--
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USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> bagel-1.2.2.132_19 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.7.5.pkg
[main-amd64-default-job-45] Installing pkg-2.7.5...
[main-amd64-default-job-45] Extracting pkg-2.7.5: .......... done
===> bagel-1.2.2.132_19 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of bagel-1.2.2.132_19
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2.132_19 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2.132_19 for building
=> SHA256 Checksum OK for qsimulate-open-bagel-v1.2.2-132-g2955e4d1a_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by bagel-1.2.2.132_19 for building
===> Extracting for bagel-1.2.2.132_19
=> SHA256 Checksum OK for qsimulate-open-bagel-v1.2.2-132-g2955e4d1a_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for bagel-1.2.2.132_19
===> Applying FreeBSD patches for bagel-1.2.2.132_19 from /usr/ports/science/bagel/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> bagel-1.2.2.132_19 depends on executable: gfortran14 - not found
===> Installing existing package /packages/All/gcc14-14.2.0_4.pkg
[main-amd64-default-job-45] Installing gcc14-14.2.0_4...
[main-amd64-default-job-45] `-- Installing binutils-2.44,1...
[main-amd64-default-job-45] | `-- Installing indexinfo-0.3.1_1...
[main-amd64-default-job-45] | `-- Extracting indexinfo-0.3.1_1: .... done
[main-amd64-default-job-45] | `-- Installing zstd-1.5.7_1...
[main-amd64-default-job-45] | `-- Extracting zstd-1.5.7_1: .......... done
[main-amd64-default-job-45] `-- Extracting binutils-2.44,1: .......... done
<snip>
In file included from ../../../src/wfn/reference.h:30:
In file included from ../../../src/mat1e/hcore.h:29:
In file included from ../../../src/wfn/hcoreinfo.h:29:
In file included from ../../../src/molecule/molecule.h:29:
In file included from ../../../src/molecule/atom.h:29:
In file included from ../../../src/molecule/shell.h:29:
In file included from ../../../src/util/math/zmatrix.h:30:
In file included from ../../../src/util/math/matrix.h:32:
In file included from ../../../src/util/math/matrix_base.h:33:
In file included from ../../../src/util/math/vectorb.h:30:
In file included from ../../../src/util/math/btas_interface.h:38:
In file included from ../../../btas/btas.h:8:
In file included from ../../../btas/generic/axpy_impl.h:8:
In file included from ../../../btas/tensor.h:11:
In file included from ../../../btas/defaults.h:15:
In file included from ../../../btas/range.h:27:
../../../btas/util/functional.h:37:59: warning: 'unary_function<const std::pair<btas::varray<long>, long> &, const long &>' is deprecated [-Wdeprecated-declarations]
37 | struct second_of_pair< std::pair<T1,T2> > : public std::unary_function<const std::pair<T1,T2>&,const T2&> {
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:35:27: note: in instantiation of template class 'btas::second_of_pair<std::pair<btas::varray<long>, long>>' requested here
35 | using type = decltype(std::declval< UnaryFunc const& >()(std::declval< typename std::iterator_traits< Iterator >::reference >()));
| ^
/usr/local/include/boost/iterator/detail/eval_if_default.hpp:34:27: note: in instantiation of template class 'boost::iterators::detail::transform_iterator_default_reference<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>' requested here
34 | using type = typename DefaultNullaryFn::type;
| ^
/usr/local/include/boost/iterator/detail/eval_if_default.hpp:38:1: note: in instantiation of template class 'boost::iterators::detail::eval_if_default<boost::use_default, boost::iterators::detail::transform_iterator_default_reference<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>>' requested here
38 | using eval_if_default_t = typename eval_if_default< T, DefaultNullaryFn, NondefaultNullaryFn >::type;
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:45:31: note: in instantiation of template type alias 'eval_if_default_t' requested here
45 | using reference = detail::eval_if_default_t<
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:74:20: note: in instantiation of template class 'boost::iterators::detail::transform_iterator_base<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>, boost::use_default, boost::use_default>' requested here
74 | public detail::transform_iterator_base< UnaryFunc, Iterator, Reference, Value >::type,
| ^
../../../btas/tensorview_iterator.h:48:24: note: in instantiation of template class 'boost::iterators::transform_iterator<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>' requested here
48 | typedef typename iterator::value_type ordinal_type;
| ^
../../../src/util/math/vectorb.h:63:71: note: in instantiation of template class 'btas::TensorViewIterator<btas::RangeNd<CblasColMajor>, const bagel::varray<double>>' requested here
63 | const DataType* data() const { /*assert(contiguous());*/ return &*cbegin(); }
| ^
../../../src/util/math/matop.h:357:55: note: in instantiation of member function 'bagel::VecView_<double>::data' requested here
357 | dger_(a.extent(0), b.extent(0), 1.0, a.data(), 1, b.data(), 1, out.data(), a.extent(0));
| ^
/usr/include/c++/v1/__functional/unary_function.h:23:8: note: 'unary_function<const std::pair<btas::varray<long>, long> &, const long &>' has been explicitly marked deprecated here
23 | struct _LIBCPP_DEPRECATED_IN_CXX11 unary_function {
| ^
/usr/include/c++/v1/__config:728:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
728 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
moldenin.cc:208:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
208 | moinfo.eig = move(*eig);
| ^
| std::
moldenin.cc:209:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
209 | moinfo.occup = move(*occup);
| ^
| std::
moldenin.cc:211:19: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
211 | moinfo.eigB = move(*eigB);
| ^
| std::
moldenin.cc:212:21: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
212 | moinfo.occupB = move(*occupB);
| ^
| std::
In file included from moldenout.cc:25:
In file included from ../../../src/util/io/moldenout.h:28:
In file included from ../../../src/util/io/moldenio.h:31:
In file included from ../../../src/wfn/reference.h:30:
In file included from ../../../src/mat1e/hcore.h:29:
In file included from ../../../src/wfn/hcoreinfo.h:29:
In file included from ../../../src/molecule/molecule.h:29:
In file included from ../../../src/molecule/atom.h:29:
In file included from ../../../src/molecule/shell.h:29:
In file included from ../../../src/util/math/zmatrix.h:30:
In file included from ../../../src/util/math/matrix.h:32:
In file included from ../../../src/util/math/matrix_base.h:33:
In file included from ../../../src/util/math/vectorb.h:30:
In file included from ../../../src/util/math/btas_interface.h:38:
In file included from ../../../btas/btas.h:8:
In file included from ../../../btas/generic/axpy_impl.h:8:
In file included from ../../../btas/tensor.h:11:
In file included from ../../../btas/defaults.h:15:
In file included from ../../../btas/range.h:27:
../../../btas/util/functional.h:37:59: warning: 'unary_function<const std::pair<btas::varray<long>, long> &, const long &>' is deprecated [-Wdeprecated-declarations]
37 | struct second_of_pair< std::pair<T1,T2> > : public std::unary_function<const std::pair<T1,T2>&,const T2&> {
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:35:27: note: in instantiation of template class 'btas::second_of_pair<std::pair<btas::varray<long>, long>>' requested here
35 | using type = decltype(std::declval< UnaryFunc const& >()(std::declval< typename std::iterator_traits< Iterator >::reference >()));
| ^
/usr/local/include/boost/iterator/detail/eval_if_default.hpp:34:27: note: in instantiation of template class 'boost::iterators::detail::transform_iterator_default_reference<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>' requested here
34 | using type = typename DefaultNullaryFn::type;
| ^
/usr/local/include/boost/iterator/detail/eval_if_default.hpp:38:1: note: in instantiation of template class 'boost::iterators::detail::eval_if_default<boost::use_default, boost::iterators::detail::transform_iterator_default_reference<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>>' requested here
38 | using eval_if_default_t = typename eval_if_default< T, DefaultNullaryFn, NondefaultNullaryFn >::type;
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:45:31: note: in instantiation of template type alias 'eval_if_default_t' requested here
45 | using reference = detail::eval_if_default_t<
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:74:20: note: in instantiation of template class 'boost::iterators::detail::transform_iterator_base<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>, boost::use_default, boost::use_default>' requested here
74 | public detail::transform_iterator_base< UnaryFunc, Iterator, Reference, Value >::type,
| ^
../../../btas/tensorview_iterator.h:48:24: note: in instantiation of template class 'boost::iterators::transform_iterator<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>' requested here
48 | typedef typename iterator::value_type ordinal_type;
| ^
../../../src/util/math/vectorb.h:63:71: note: in instantiation of template class 'btas::TensorViewIterator<btas::RangeNd<CblasColMajor>, const bagel::varray<double>>' requested here
63 | const DataType* data() const { /*assert(contiguous());*/ return &*cbegin(); }
| ^
../../../src/util/math/matop.h:357:55: note: in instantiation of member function 'bagel::VecView_<double>::data' requested here
357 | dger_(a.extent(0), b.extent(0), 1.0, a.data(), 1, b.data(), 1, out.data(), a.extent(0));
| ^
/usr/include/c++/v1/__functional/unary_function.h:23:8: note: 'unary_function<const std::pair<btas::varray<long>, long> &, const long &>' has been explicitly marked deprecated here
23 | struct _LIBCPP_DEPRECATED_IN_CXX11 unary_function {
| ^
/usr/include/c++/v1/__config:728:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
728 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
In file included from moldenin.cc:26:
In file included from ../../../src/util/io/moldenin.h:28:
In file included from ../../../src/util/io/moldenio.h:31:
In file included from ../../../src/wfn/reference.h:30:
In file included from ../../../src/mat1e/hcore.h:29:
In file included from ../../../src/wfn/hcoreinfo.h:29:
In file included from ../../../src/molecule/molecule.h:29:
In file included from ../../../src/molecule/atom.h:29:
In file included from ../../../src/molecule/shell.h:29:
In file included from ../../../src/util/math/zmatrix.h:30:
In file included from ../../../src/util/math/matrix.h:32:
In file included from ../../../src/util/math/matrix_base.h:33:
In file included from ../../../src/util/math/vectorb.h:30:
In file included from ../../../src/util/math/btas_interface.h:38:
In file included from ../../../btas/btas.h:8:
In file included from ../../../btas/generic/axpy_impl.h:8:
In file included from ../../../btas/tensor.h:11:
In file included from ../../../btas/defaults.h:15:
In file included from ../../../btas/range.h:27:
../../../btas/util/functional.h:37:59: warning: 'unary_function<const std::pair<btas::varray<long>, long> &, const long &>' is deprecated [-Wdeprecated-declarations]
37 | struct second_of_pair< std::pair<T1,T2> > : public std::unary_function<const std::pair<T1,T2>&,const T2&> {
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:35:27: note: in instantiation of template class 'btas::second_of_pair<std::pair<btas::varray<long>, long>>' requested here
35 | using type = decltype(std::declval< UnaryFunc const& >()(std::declval< typename std::iterator_traits< Iterator >::reference >()));
| ^
/usr/local/include/boost/iterator/detail/eval_if_default.hpp:34:27: note: in instantiation of template class 'boost::iterators::detail::transform_iterator_default_reference<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>' requested here
34 | using type = typename DefaultNullaryFn::type;
| ^
/usr/local/include/boost/iterator/detail/eval_if_default.hpp:38:1: note: in instantiation of template class 'boost::iterators::detail::eval_if_default<boost::use_default, boost::iterators::detail::transform_iterator_default_reference<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>>' requested here
38 | using eval_if_default_t = typename eval_if_default< T, DefaultNullaryFn, NondefaultNullaryFn >::type;
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:45:31: note: in instantiation of template type alias 'eval_if_default_t' requested here
45 | using reference = detail::eval_if_default_t<
| ^
/usr/local/include/boost/iterator/transform_iterator.hpp:74:20: note: in instantiation of template class 'boost::iterators::detail::transform_iterator_base<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>, boost::use_default, boost::use_default>' requested here
74 | public detail::transform_iterator_base< UnaryFunc, Iterator, Reference, Value >::type,
| ^
../../../btas/tensorview_iterator.h:48:24: note: in instantiation of template class 'boost::iterators::transform_iterator<btas::second_of_pair<std::pair<btas::varray<long>, long>>, btas::RangeIterator<std::pair<btas::varray<long>, long>, btas::RangeNd<CblasColMajor>>>' requested here
48 | typedef typename iterator::value_type ordinal_type;
| ^
../../../src/util/math/vectorb.h:63:71: note: in instantiation of template class 'btas::TensorViewIterator<btas::RangeNd<CblasColMajor>, const bagel::varray<double>>' requested here
63 | const DataType* data() const { /*assert(contiguous());*/ return &*cbegin(); }
| ^
../../../src/util/math/matop.h:357:55: note: in instantiation of member function 'bagel::VecView_<double>::data' requested here
357 | dger_(a.extent(0), b.extent(0), 1.0, a.data(), 1, b.data(), 1, out.data(), a.extent(0));
| ^
/usr/include/c++/v1/__functional/unary_function.h:23:8: note: 'unary_function<const std::pair<btas::varray<long>, long> &, const long &>' has been explicitly marked deprecated here
23 | struct _LIBCPP_DEPRECATED_IN_CXX11 unary_function {
| ^
/usr/include/c++/v1/__config:728:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
728 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
| ^
/usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED'
713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
| ^
4 warnings and 5 errors generated.
gmake[4]: *** [Makefile:408: moldenio.lo] Error 1
gmake[4]: *** Waiting for unfinished jobs....
4 warnings and 5 errors generated.
gmake[4]: *** [Makefile:408: moldenout.lo] Error 1
8 warnings and 5 errors generated.
gmake[4]: *** [Makefile:408: moldenin.lo] Error 1
gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src/util/io'
gmake[3]: *** [Makefile:465: all-recursive] Error 1
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src/util'
gmake[2]: *** [Makefile:633: all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a/src'
gmake[1]: *** [Makefile:430: all-recursive] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.2.2-132-g2955e4d1a'
gmake: *** [Makefile:362: all] Error 2
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/science/bagel