[package - 150arm64-default][science/py-netCDF4] Failed for py311-netCDF4-1.7.2_2 in configure
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Date: Thu, 07 May 2026 09:12:34 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: ports@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere5/data/150arm64-default/992875ed070f/logs/py311-netCDF4-1.7.2_2.log
Build URL: https://pkg-status.freebsd.org/ampere5/build.html?mastername=150arm64-default&build=992875ed070f
Log:
=>> Building science/py-netCDF4
build started at Thu May 7 09:12:22 UTC 2026
port directory: /usr/ports/science/py-netCDF4
package name: py311-netCDF4-1.7.2_2
building for: FreeBSD 150arm64-default-job-13 15.0-RELEASE-p8 FreeBSD 15.0-RELEASE-p8 arm64
maintained by: ports@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1649 May 7 01:02 /usr/ports/science/py-netCDF4/Makefile
Ports top last git commit: 992875ed070f349edc2d61d5b59b10f6f5814cb1
Ports top unclean checkout: no
Port dir last git commit: 2bf3834a197ccf8956332378eda8dd7577965246
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.8
Host OSVERSION: 1600014
Jail OSVERSION: 1500068
Job Id: 13
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500068
UNAME_v=FreeBSD 15.0-RELEASE-p8
UNAME_r=15.0-RELEASE-p8
BLOCKSIZE=K
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MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
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MAKE_OBJDIR_CHECK_WRITABLE=0
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P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
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POUDRIERE_PKGNAME=poudriere-git-3.4.8
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py311
MAKE_ARGS= FLAVOR=py311
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for py311-netCDF4-1.7.2_2:
DOCS=on: Build and/or install documentation
EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
ports@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-netCDF4/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-netCDF4/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-netCDF4/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-netCDF4/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-netCDF4/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="inst
all -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-netCDF4" EXAMPLESDIR="share/examples/py311-netCDF4" DATADIR="share/py311-netCDF4" WWWDIR="www/py311-netCDF4" ETCDIR="etc/py311-netCDF4"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-netCDF4 DOCSDIR=/usr/local/share/doc/py311-netCDF4 EXAMPLESDIR=/usr/local/share/examples/py311-netCDF4 WWWDIR=/usr/local/www/py311-netCDF4 ETCDIR=/usr/local/etc/py311-netCDF4
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 1048576
stack size (kbytes, -s) 1048576
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
The netCDF4 port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-netCDF4-1.7.2_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.7.5.pkg
[150arm64-default-job-13] Installing pkg-2.7.5...
[150arm64-default-job-13] Extracting pkg-2.7.5: .......... done
===> py311-netCDF4-1.7.2_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-netCDF4-1.7.2_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
The netCDF4 port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License MIT accepted by the user
===> Fetching all distfiles required by py311-netCDF4-1.7.2_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
The netCDF4 port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License MIT accepted by the user
===> Fetching all distfiles required by py311-netCDF4-1.7.2_2 for building
=> SHA256 Checksum OK for netcdf4-1.7.2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> NOTICE:
The netCDF4 port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://docs.freebsd.org/en/articles/contributing/#ports-contributing
===> License MIT accepted by the user
===> Fetching all distfiles required by py311-netCDF4-1.7.2_2 for building
===> Extracting for py311-netCDF4-1.7.2_2
=> SHA256 Checksum OK for netcdf4-1.7.2.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py311-netCDF4-1.7.2_2
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-netCDF4-1.7.2_2 depends on package: py311-numpy>=1.16 - not found
===> Installing existing package /packages/All/py311-numpy-2.4.4_2,1.pkg
[150arm64-default-job-13] Installing py311-numpy-2.4.4_2,1...
[150arm64-default-job-13] `-- Installing gcc14-14.2.0_4...
[150arm64-default-job-13] | `-- Installing binutils-2.44,1...
[150arm64-default-job-13] | | `-- Installing indexinfo-0.3.1_1...
[150arm64-default-job-13] | | `-- Extracting indexinfo-0.3.1_1: .... done
[150arm64-default-job-13] | | `-- Installing zstd-1.5.7_1...
[150arm64-default-job-13] | | `-- Extracting zstd-1.5.7_1: .......... done
[150arm64-default-job-13] | `-- Extracting binutils-2.44,1: .......... done
[150arm64-default-job-13] | `-- Installing gmp-6.3.0...
[150arm64-default-job-13] | `-- Extracting gmp-6.3.0: .......... done
[150arm64-default-job-13] | `-- Installing mpc-1.4.1...
[150arm64-default-job-13] | | `-- Installing mpfr-4.2.2,1...
[150arm64-default-job-13] | | `-- Extracting mpfr-4.2.2,1: .......... done
[150arm64-default-job-13] | `-- Extracting mpc-1.4.1: .......... done
[150arm64-default-job-13] `-- Extracting gcc14-14.2.0_4: .......... done
[150arm64-default-job-13] `-- Installing openblas-0.3.30,2...
[150arm64-default-job-13] `-- Extracting openblas-0.3.30,2: .......... done
[150arm64-default-job-13] `-- Installing python311-3.11.15_2...
[150arm64-default-job-13] | `-- Installing gettext-runtime-1.0...
[150arm64-default-job-13] | `-- Extracting gettext-runtime-1.0: .......... done
[150arm64-default-job-13] | `-- Installing libffi-3.5.1...
[150arm64-default-job-13] | `-- Extracting libffi-3.5.1: .......... done
[150arm64-default-job-13] | `-- Installing mpdecimal-4.0.1...
[150arm64-default-job-13] | `-- Extracting mpdecimal-4.0.1: .......... done
[150arm64-default-job-13] | `-- Installing readline-8.3.3...
[150arm64-default-job-13] | `-- Extracting readline-8.3.3: .......... done
[150arm64-default-job-13] `-- Extracting python311-3.11.15_2: .......... done
[150arm64-default-job-13] Extracting py311-numpy-2.4.4_2,1: .......... done
=====
Message from gcc14-14.2.0_4:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc14
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
=====
Message from python311-3.11.15_2:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> py311-netCDF4-1.7.2_2 depends on package: py311-numpy>=1.16 - found
===> Returning to build of py311-netCDF4-1.7.2_2
===> py311-netCDF4-1.7.2_2 depends on package: py311-cython>=3.2.4 - not found
===> Installing existing package /packages/All/py311-cython-3.2.4.pkg
[150arm64-default-job-13] Installing py311-cython-3.2.4...
[150arm64-default-job-13] Extracting py311-cython-3.2.4: .......... done
===> py311-netCDF4-1.7.2_2 depends on package: py311-cython>=3.2.4 - found
===> Returning to build of py311-netCDF4-1.7.2_2
===> py311-netCDF4-1.7.2_2 depends on package: py311-setuptools>=63.1.0 - not found
===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg
[150arm64-default-job-13] Installing py311-setuptools-63.1.0_3...
[150arm64-default-job-13] Extracting py311-setuptools-63.1.0_3: .......... done
===> py311-netCDF4-1.7.2_2 depends on package: py311-setuptools>=63.1.0 - found
===> Returning to build of py311-netCDF4-1.7.2_2
===> py311-netCDF4-1.7.2_2 depends on file: /usr/local/bin/python3.11 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-netCDF4-1.7.2_2 depends on shared library: libhdf5.so - not found
===> Installing existing package /packages/All/hdf5-1.12.2_2,1.pkg
[150arm64-default-job-13] Installing hdf5-1.12.2_2,1...
[150arm64-default-job-13] `-- Installing libaec-1.1.6...
[150arm64-default-job-13] `-- Extracting libaec-1.1.6: .......... done
[150arm64-default-job-13] Extracting hdf5-1.12.2_2,1: .......... done
===> py311-netCDF4-1.7.2_2 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===> Returning to build of py311-netCDF4-1.7.2_2
===> py311-netCDF4-1.7.2_2 depends on shared library: libnetcdf.so - not found
===> Installing existing package /packages/All/netcdf-4.10.0.pkg
[150arm64-default-job-13] Installing netcdf-4.10.0...
[150arm64-default-job-13] `-- Installing curl-8.20.0...
[150arm64-default-job-13] | `-- Installing brotli-1.2.0,1...
[150arm64-default-job-13] | `-- Extracting brotli-1.2.0,1: .......... done
[150arm64-default-job-13] | `-- Installing libidn2-2.3.8...
[150arm64-default-job-13] | | `-- Installing libunistring-1.4.2...
[150arm64-default-job-13] | | `-- Extracting libunistring-1.4.2: .......... done
[150arm64-default-job-13] | `-- Extracting libidn2-2.3.8: .......... done
[150arm64-default-job-13] | `-- Installing libnghttp2-1.69.0...
[150arm64-default-job-13] | `-- Extracting libnghttp2-1.69.0: .......... done
[150arm64-default-job-13] | `-- Installing libpsl-0.21.5_2...
[150arm64-default-job-13] | `-- Extracting libpsl-0.21.5_2: .......... done
[150arm64-default-job-13] | `-- Installing libssh2-1.11.1,3...
[150arm64-default-job-13] | `-- Extracting libssh2-1.11.1,3: .......... done
[150arm64-default-job-13] `-- Extracting curl-8.20.0: .......... done
[150arm64-default-job-13] `-- Installing pkgconf-2.4.3,1...
[150arm64-default-job-13] `-- Extracting pkgconf-2.4.3,1: .......... done
[150arm64-default-job-13] Extracting netcdf-4.10.0: .......... done
===> py311-netCDF4-1.7.2_2 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so)
===> Returning to build of py311-netCDF4-1.7.2_2
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py311-netCDF4-1.7.2_2
-L/usr/local/lib -lnetcdf
-L/usr/local/lib -lhdf5
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "setup.py", line 370, in <module>
netcdf_lib_version = getnetcdfvers(lib_dirs)
^^^^^^^^^^^^^^^^^^^^^^^
File "setup.py", line 73, in getnetcdfvers
import os, re, sys, ctypes
File "/usr/local/lib/python3.11/ctypes/__init__.py", line 8, in <module>
from _ctypes import Union, Structure, Array
ImportError: /usr/local/lib/gcc14/libgcc_s.so.1: version GCC_4.6.0 required by /usr/local/lib/python3.11/lib-dynload/_ctypes.cpython-311.so not found
reading from setup.cfg...
using /usr/local/bin/nc-config...
checking /usr/local/include...
HDF5 library version: 1.12.2 headers found in /usr/local/include
*** Error code 1
Stop.
make: stopped making "configure" in /usr/ports/science/py-netCDF4