[package - 150arm64-default][biology/py-macs2] Failed for py312-macs2-2.2.9.1_3 in build
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Date: Sun, 28 Jun 2026 12:16:40 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere5/data/150arm64-default/932084179555/logs/py312-macs2-2.2.9.1_3.log
Build URL: https://pkg-status.freebsd.org/ampere5/build.html?mastername=150arm64-default&build=932084179555
Log:
=>> Building biology/py-macs2
build started at Sun Jun 28 12:16:09 UTC 2026
port directory: /usr/ports/biology/py-macs2
package name: py312-macs2-2.2.9.1_3
building for: FreeBSD 150arm64-default-job-18 15.0-RELEASE-p10 FreeBSD 15.0-RELEASE-p10 arm64
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1041 May 7 01:02 /usr/ports/biology/py-macs2/Makefile
Ports top last git commit: 93208417955506265e7dd8a8d1b4a222a91e8270
Ports top unclean checkout: no
Port dir last git commit: 2bf3834a197ccf8956332378eda8dd7577965246
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.8
Host OSVERSION: 1600018
Jail OSVERSION: 1500068
Job Id: 18
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MAKE_ARGS= FLAVOR=py312
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jwb@FreeBSD.org
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--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.12" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py312 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py312 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py312/.cache HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py312 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-macs2/work-py312/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs2/work-py312/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
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MAKE_JOBS_NUMBER=3
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GID=0
UID=0
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open files (-n) 8192
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kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py312-macs2-2.2.9.1_3 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.7.5.pkg
[150arm64-default-job-18] Installing pkg-2.7.5...
[150arm64-default-job-18] Extracting pkg-2.7.5: .......... done
===> py312-macs2-2.2.9.1_3 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py312-macs2-2.2.9.1_3
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py312-macs2-2.2.9.1_3 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py312-macs2-2.2.9.1_3 for building
=> SHA256 Checksum OK for taoliu-MACS-v2.2.9.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py312-macs2-2.2.9.1_3 for building
===> Extracting for py312-macs2-2.2.9.1_3
=> SHA256 Checksum OK for taoliu-MACS-v2.2.9.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py312-macs2-2.2.9.1_3
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py312-macs2-2.2.9.1_3 depends on package: py312-numpy>=1.16 - not found
===> Installing existing package /packages/All/py312-numpy-2.4.6_1,1.pkg
[150arm64-default-job-18] Installing py312-numpy-2.4.6_1,1...
[150arm64-default-job-18] `-- Installing gcc14-14.2.0_6...
[150arm64-default-job-18] | `-- Installing binutils-2.44,1...
[150arm64-default-job-18] | | `-- Installing indexinfo-0.3.1_1...
[150arm64-default-job-18] | | `-- Extracting indexinfo-0.3.1_1: .... done
[150arm64-default-job-18] | | `-- Installing zstd-1.5.7_2...
[150arm64-default-job-18] | | `-- Installing liblz4-1.10.0_2,1...
[150arm64-default-job-18] | | `-- Extracting liblz4-1.10.0_2,1: .......... done
[150arm64-default-job-18] | | `-- Extracting zstd-1.5.7_2: .......... done
[150arm64-default-job-18] | `-- Extracting binutils-2.44,1: .......... done
[150arm64-default-job-18] | `-- Installing gmp-6.3.0...
[150arm64-default-job-18] | `-- Extracting gmp-6.3.0: .......... done
[150arm64-default-job-18] | `-- Installing mpc-1.4.1...
[150arm64-default-job-18] | | `-- Installing mpfr-4.2.2,1...
[150arm64-default-job-18] | | `-- Extracting mpfr-4.2.2,1: .......... done
[150arm64-default-job-18] | `-- Extracting mpc-1.4.1: .......... done
[150arm64-default-job-18] `-- Extracting gcc14-14.2.0_6: .......... done
[150arm64-default-job-18] `-- Installing openblas-0.3.33,2...
[150arm64-default-job-18] `-- Extracting openblas-0.3.33,2: .......... done
[150arm64-default-job-18] `-- Installing python312-3.12.13_3...
[150arm64-default-job-18] | `-- Installing expat-2.8.1...
[150arm64-default-job-18] | `-- Extracting expat-2.8.1: .......... done
[150arm64-default-job-18] | `-- Installing gettext-runtime-1.0_1...
[150arm64-default-job-18] | `-- Extracting gettext-runtime-1.0_1: .......... done
<snip>
| ^
MACS2/Prob.c:2501:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2501 | __Pyx_TraceReturn(__pyx_r, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1601:15: note: expanded from macro '__Pyx_TraceReturn'
1601 | if (__Pyx_IsTracing(tstate, 0, 0)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2591:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2591 | __Pyx_TraceCall("pnorm (wrapper)", __pyx_f[0], 44, 0, __PYX_ERR(0, 44, __pyx_L1_error));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1535:15: note: expanded from macro '__Pyx_TraceCall'
1535 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2591:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2591 | __Pyx_TraceCall("pnorm (wrapper)", __pyx_f[0], 44, 0, __PYX_ERR(0, 44, __pyx_L1_error));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1543:11: note: expanded from macro '__Pyx_TraceCall'
1543 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2606:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2606 | __Pyx_TraceReturn(__pyx_r, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1594:19: note: expanded from macro '__Pyx_TraceReturn'
1594 | if (__Pyx_IsTracing(tstate, 0, 0)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2606:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2606 | __Pyx_TraceReturn(__pyx_r, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1601:15: note: expanded from macro '__Pyx_TraceReturn'
1601 | if (__Pyx_IsTracing(tstate, 0, 0)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2635:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2635 | __Pyx_TraceCall("factorial", __pyx_f[0], 53, 0, __PYX_ERR(0, 53, __pyx_L1_error));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1535:15: note: expanded from macro '__Pyx_TraceCall'
1535 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2635:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2635 | __Pyx_TraceCall("factorial", __pyx_f[0], 53, 0, __PYX_ERR(0, 53, __pyx_L1_error));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1543:11: note: expanded from macro '__Pyx_TraceCall'
1543 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2728:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2728 | __Pyx_TraceReturn(__pyx_r, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1594:19: note: expanded from macro '__Pyx_TraceReturn'
1594 | if (__Pyx_IsTracing(tstate, 0, 0)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2728:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2728 | __Pyx_TraceReturn(__pyx_r, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1601:15: note: expanded from macro '__Pyx_TraceReturn'
1601 | if (__Pyx_IsTracing(tstate, 0, 0)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2769:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2769 | __Pyx_TraceCall("factorial (wrapper)", __pyx_f[0], 53, 0, __PYX_ERR(0, 53, __pyx_L1_error));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1535:15: note: expanded from macro '__Pyx_TraceCall'
1535 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2769:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2769 | __Pyx_TraceCall("factorial (wrapper)", __pyx_f[0], 53, 0, __PYX_ERR(0, 53, __pyx_L1_error));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1543:11: note: expanded from macro '__Pyx_TraceCall'
1543 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2784:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2784 | __Pyx_TraceReturn(__pyx_r, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1594:19: note: expanded from macro '__Pyx_TraceReturn'
1594 | if (__Pyx_IsTracing(tstate, 0, 0)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2784:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2784 | __Pyx_TraceReturn(__pyx_r, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1601:15: note: expanded from macro '__Pyx_TraceReturn'
1601 | if (__Pyx_IsTracing(tstate, 0, 0)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2815:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2815 | __Pyx_TraceCall("poz", __pyx_f[0], 65, 0, __PYX_ERR(0, 65, __pyx_L1_error));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1535:15: note: expanded from macro '__Pyx_TraceCall'
1535 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:2815:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
2815 | __Pyx_TraceCall("poz", __pyx_f[0], 65, 0, __PYX_ERR(0, 65, __pyx_L1_error));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1543:11: note: expanded from macro '__Pyx_TraceCall'
1543 | if (__Pyx_IsTracing(tstate, 1, 1)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
MACS2/Prob.c:3038:3: error: no member named 'use_tracing' in 'struct _PyCFrame'
3038 | __Pyx_TraceReturn(Py_None, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1594:19: note: expanded from macro '__Pyx_TraceReturn'
1594 | if (__Pyx_IsTracing(tstate, 0, 0)) {\
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MACS2/Prob.c:1496:34: note: expanded from macro '__Pyx_IsTracing'
1496 | (unlikely((tstate)->cframe->use_tracing) &&\
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
MACS2/Prob.c:981:43: note: expanded from macro 'unlikely'
981 | #define unlikely(x) __builtin_expect(!!(x), 0)
| ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
error: command '/usr/bin/cc' failed with exit code 1
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/biology/py-macs2