[package - 150amd64-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-30.4.0 in build
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Date: Sat, 27 Jun 2026 07:20:25 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy23/data/150amd64-default/a1fb4afca079/logs/ncbi-cxx-toolkit-30.4.0.log
Build URL: https://pkg-status.freebsd.org/beefy23/build.html?mastername=150amd64-default&build=a1fb4afca079
Log:
=>> Building biology/ncbi-cxx-toolkit
build started at Sat Jun 27 04:38:45 UTC 2026
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-30.4.0
building for: FreeBSD 150amd64-default-job-23 15.0-RELEASE-p10 FreeBSD 15.0-RELEASE-p10 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1662 Jun 9 01:01 /usr/ports/biology/ncbi-cxx-toolkit/Makefile
Ports top last git commit: a1fb4afca079fc25d133f0b442dcc141b9d98d5f
Ports top unclean checkout: no
Port dir last git commit: 265e0b7b35b8527796e5765fcbcc92232df5dacd
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.8
Host OSVERSION: 1600018
Jail OSVERSION: 1500068
Job Id: 23
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yuri@FreeBSD.org
--End MAINTAINER--
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PYTHON_INCLUDEDIR=/usr/local/include/python3.12 PYTHON_LIBDIR=/usr/local/lib/python3.12 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.12/site-packages PYTHON_SUFFIX=312 PYTHON_BASESUFFIX=312 PYTHON_TAG=.cpython-312 PYTHON_SOABI=.cpython-312 PYTHON_VER=3.12 PYTHON_BASEVER=3.12 PYTHON_VERSION=python3.12 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-cxx-toolkit DOCSDIR=/usr/local/share/doc/ncbi-cxx-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-cxx-toolkit WWWDIR=/usr/local/www/ncbi-cxx-toolkit ETCDIR=/usr/local/etc/ncbi-cxx-toolkit
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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 33554432
stack size (kbytes, -s) 524288
core file size (512-blocks, -c) unlimited
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locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-cxx-toolkit-30.4.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.7.5.pkg
[150amd64-default-job-23] Installing pkg-2.7.5...
[150amd64-default-job-23] Extracting pkg-2.7.5: .......... done
===> ncbi-cxx-toolkit-30.4.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-cxx-toolkit-30.4.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-30.4.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-30.4.0 for building
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-30.4.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-30.4.0 for building
===> Extracting for ncbi-cxx-toolkit-30.4.0
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-30.4.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for ncbi-cxx-toolkit-30.4.0
===> Applying FreeBSD patches for ncbi-cxx-toolkit-30.4.0 from /usr/ports/biology/ncbi-cxx-toolkit/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-cxx-toolkit-30.4.0 depends on package: gmake>=4.4.1 - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[150amd64-default-job-23] Installing gmake-4.4.1...
[150amd64-default-job-23] `-- Installing gettext-runtime-1.0_1...
[150amd64-default-job-23] | `-- Installing indexinfo-0.3.1_1...
[150amd64-default-job-23] | `-- Extracting indexinfo-0.3.1_1: .... done
[150amd64-default-job-23] `-- Extracting gettext-runtime-1.0_1: .......... done
[150amd64-default-job-23] Extracting gmake-4.4.1: .......... done
===> ncbi-cxx-toolkit-30.4.0 depends on package: gmake>=4.4.1 - found
===> Returning to build of ncbi-cxx-toolkit-30.4.0
===> ncbi-cxx-toolkit-30.4.0 depends on file: /usr/local/bin/python3.12 - not found
===> Installing existing package /packages/All/python312-3.12.13_3.pkg
[150amd64-default-job-23] Installing python312-3.12.13_3...
[150amd64-default-job-23] `-- Installing expat-2.8.1...
[150amd64-default-job-23] `-- Extracting expat-2.8.1: .......... done
[150amd64-default-job-23] `-- Installing libffi-3.6.0...
[150amd64-default-job-23] `-- Extracting libffi-3.6.0: .......... done
[150amd64-default-job-23] `-- Installing mpdecimal-4.0.1...
[150amd64-default-job-23] `-- Extracting mpdecimal-4.0.1: .......... done
[150amd64-default-job-23] `-- Installing readline-8.3.3...
[150amd64-default-job-23] `-- Extracting readline-8.3.3: .......... done
[150amd64-default-job-23] Extracting python312-3.12.13_3: .......... done
=====
Message from python312-3.12.13_3:
<snip>
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/espell'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/espell'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/espell/espell__.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/espell/espell___.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/espell/espell__.cpp -o espell__.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/espell/espell___.cpp -o espell___.o
/bin/rm -f libespell.so .libespell.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o libespell.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -O -fPIC espell__.o espell___.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/scripts/common/impl/if_diff.sh /bin/ln -f libespell.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib
/bin/ln -f libespell.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib/libespell.so
/bin/ln -f .espell.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/status/.espell.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/espell'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/espell'
/usr/local/bin/gmake -C esummary --jobserver-auth=fifo:/tmp/GMfifo13845 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/esummary'
File esummary.module not found. Using defaults...
/usr/local/bin/gmake --jobserver-auth=fifo:/tmp/GMfifo13845 -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 builddir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/esummary'
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 \
-opm /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src -m esummary.dtd -M "" -oA \
-oc esummary -or objtools/eutils/esummary -odi -od esummary.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd esummary.dump \
datatool: 2.25.0
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/esummary'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/esummary'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/esummary'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/esummary'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/esummary'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/esummary'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/esummary'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/esummary'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/esummary/esummary__.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/esummary/esummary___.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o
/bin/rm -f libesummary.so .libesummary.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o libesummary.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -O -fPIC esummary__.o esummary___.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib
/bin/ln -f libesummary.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib/libesummary.so
/bin/ln -f .esummary.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/status/.esummary.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/esummary'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/esummary'
/usr/local/bin/gmake -C linkout --jobserver-auth=fifo:/tmp/GMfifo13845 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/linkout'
File linkout.module not found. Using defaults...
/usr/local/bin/gmake --jobserver-auth=fifo:/tmp/GMfifo13845 -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.module MODULE=linkout MODULE_PATH=objtools/eutils/linkout MODULE_ASN=linkout.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 builddir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/linkout'
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 \
-opm /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src -m linkout.dtd -M "" -oA \
-oc linkout -or objtools/eutils/linkout -odi -od linkout.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd linkout.dump \
datatool: 2.25.0
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/linkout'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/linkout'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/linkout'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/linkout'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/linkout'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/linkout'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/linkout'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/linkout'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/linkout/linkout__.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/linkout/linkout___.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/linkout/linkout__.cpp -o linkout__.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/linkout/linkout___.cpp -o linkout___.o
/bin/rm -f liblinkout.so .liblinkout.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o liblinkout.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -O -fPIC linkout__.o linkout___.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/scripts/common/impl/if_diff.sh /bin/ln -f liblinkout.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib
/bin/ln -f liblinkout.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib/liblinkout.so
/bin/ln -f .linkout.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/status/.linkout.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/linkout'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/linkout'
/usr/local/bin/gmake -C einfo --jobserver-auth=fifo:/tmp/GMfifo13845 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/einfo'
File einfo.module not found. Using defaults...
/usr/local/bin/gmake --jobserver-auth=fifo:/tmp/GMfifo13845 -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 builddir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/einfo'
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 \
-opm /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src -m einfo.dtd -M "" -oA \
-oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \
datatool: 2.25.0
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/einfo'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/einfo'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/einfo'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/einfo'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/einfo'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/einfo'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/einfo'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/einfo'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/einfo/einfo__.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/einfo/einfo___.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o
/bin/rm -f libeinfo.so .libeinfo.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o libeinfo.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -O -fPIC einfo__.o einfo___.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib
/bin/ln -f libeinfo.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib/libeinfo.so
/bin/ln -f .einfo.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/status/.einfo.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/einfo'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/einfo'
/usr/local/bin/gmake -C uilist --jobserver-auth=fifo:/tmp/GMfifo13845 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/uilist'
File uilist.module not found. Using defaults...
/usr/local/bin/gmake --jobserver-auth=fifo:/tmp/GMfifo13845 -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 builddir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/uilist'
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 \
-opm /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src -m uilist.dtd -M "" -oA \
-oc uilist -or objtools/eutils/uilist -odi -od uilist.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd uilist.dump \
datatool: 2.25.0
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/uilist'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/uilist'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/uilist'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/uilist'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/uilist'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/uilist'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/uilist'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/uilist'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/uilist/uilist__.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/uilist/uilist___.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o
/bin/rm -f libuilist.so .libuilist.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o libuilist.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -O -fPIC uilist__.o uilist___.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib
/bin/ln -f libuilist.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib/libuilist.so
/bin/ln -f .uilist.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/status/.uilist.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/uilist'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/uilist'
/usr/local/bin/gmake -C ehistory --jobserver-auth=fifo:/tmp/GMfifo13845 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/ehistory'
File ehistory.module not found. Using defaults...
/usr/local/bin/gmake --jobserver-auth=fifo:/tmp/GMfifo13845 -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 builddir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/ehistory'
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 \
-opm /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src -m ehistory.dtd -M "" -oA \
-oc ehistory -or objtools/eutils/ehistory -odi -od ehistory.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd ehistory.dump \
datatool: 2.25.0
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/ehistory'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/ehistory'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/ehistory'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/ehistory'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/ehistory'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/ehistory'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/ehistory'
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/ehistory'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/ehistory/ehistory___.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/ehistory/ehistory__.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/include -DNCBI_BUILD_SESSION_ID=82e84207-71e2-11f1-b1c2-b48351217884 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o
/bin/rm -f libehistory.so .libehistory.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o libehistory.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -O -fPIC ehistory__.o ehistory___.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib
/bin/ln -f libehistory.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/lib/libehistory.so
/bin/ln -f .ehistory.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/status/.ehistory.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/ehistory'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/ehistory'
/usr/local/bin/gmake -C efetch --jobserver-auth=fifo:/tmp/GMfifo13845 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/efetch'
File efetch.module not found. Using defaults...
/usr/local/bin/gmake --jobserver-auth=fifo:/tmp/GMfifo13845 -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.module MODULE=efetch MODULE_PATH=objtools/eutils/efetch MODULE_ASN=efetch.xsd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 builddir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/efetch'
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/bin/datatool -oR /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0 \
-opm /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src -m efetch.xsd -M "" -oA \
-oc efetch -or objtools/eutils/efetch -odi -od efetch.def -oex '' \
-ocvs -pch 'ncbi_pch.hpp' -fd efetch.dump \
Maximum execution time of 910 second(s) is exceeded
FAILED: src/objtools/eutils/efetch/Makefile.efetch.lib
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.meta_l:327: sources.nonusr] Error 6
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils/efetch'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools/eutils'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build/objtools'
gmake[1]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/Clang1917-ReleaseMTDLL64/build'
gmake: *** [Makefile:24: all] Error 2
===> Compilation failed unexpectedly.
datatool: 2.25.0
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-30.4.0/src/objtools/eutils/efetch'
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/biology/ncbi-cxx-toolkit