[package - main-amd64-default][science/serac] Failed for serac-g20260327 in build
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Date: Thu, 04 Jun 2026 02:15:44 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy24/data/main-amd64-default/p226b23044ee7_s67df3130159/logs/serac-g20260327.log
Build URL: https://pkg-status.freebsd.org/beefy24/build.html?mastername=main-amd64-default&build=p226b23044ee7_s67df3130159
Log:
=>> Building science/serac
build started at Thu Jun 4 02:13:51 UTC 2026
port directory: /usr/ports/science/serac
package name: serac-g20260327
building for: FreeBSD main-amd64-default-job-11 16.0-CURRENT FreeBSD 16.0-CURRENT 1600018 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1763 Apr 2 01:01 /usr/ports/science/serac/Makefile
Ports top last git commit: 226b23044ee7ea8141309e217f14c14c7c3fe02b
Ports top unclean checkout: no
Port dir last git commit: 34247b360657834e4aed0c2e58181f9319ae4bfb
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.8
Host OSVERSION: 1600018
Jail OSVERSION: 1600018
Job Id: 11
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---Begin OPTIONS List---
===> The following configuration options are available for serac-g20260327:
====> MPI (Message Passing Interface) support: you have to select exactly one of them
MPICH=on: Parallel processing support via MPICH
OPENMPI=off: Parallel processing support via Open MPI
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/serac/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/serac/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/serac/work/.cache HOME=/wrkdirs/usr/ports/science/serac/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/serac/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/serac/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
MPICH="" NO_MPICH="@comment " OPENMPI="@comment " NO_OPENMPI="" CMAKE_BUILD_TYPE="release" LUA_MODLIBDIR=lib/lua/5.4 LUA_MODSHAREDIR=share/lua/5.4 LUA_MODDOCSDIR=share/doc/lua54 LUA_INCDIR=include/lua54 LUA_VER=5.4 LUA_VER_STR=54 OSREL=16.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/serac" EXAMPLESDIR="share/examples/serac" DATADIR="share/serac" WWWDIR="www/serac" ETCDIR="etc/serac"
--End PLIST_SUB--
--SUB_LIST--
MPICH="" NO_MPICH="@comment " OPENMPI="@comment " NO_OPENMPI="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/serac DOCSDIR=/usr/local/share/doc/serac EXAMPLESDIR=/usr/local/share/examples/serac WWWDIR=/usr/local/www/serac ETCDIR=/usr/local/etc/serac
--End SUB_LIST--
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WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
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kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (kbytes, -y) unlimited
virtual machines (-V) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> serac-g20260327 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.7.5.pkg
[main-amd64-default-job-11] Installing pkg-2.7.5...
[main-amd64-default-job-11] Extracting pkg-2.7.5: .......... done
===> serac-g20260327 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of serac-g20260327
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by serac-g20260327 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by serac-g20260327 for building
=> SHA256 Checksum OK for LLNL-smith-g20260327-887c1cb_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-blt-2bf714a56d64b9b66b2a2b20207587af052efc36_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-gretl-fbbbee58b3d3b97771b107ca6e015a40dcf5e0f6_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-uberenv-bf2f438fc1fe97bb8290a11e5d4f2d56085b4ee3_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-serac_tests-75d838c69f48a0f263ad68a81d963a0615bed37f_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by serac-g20260327 for building
===> Extracting for serac-g20260327
=> SHA256 Checksum OK for LLNL-smith-g20260327-887c1cb_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-blt-2bf714a56d64b9b66b2a2b20207587af052efc36_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-gretl-fbbbee58b3d3b97771b107ca6e015a40dcf5e0f6_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-uberenv-bf2f438fc1fe97bb8290a11e5d4f2d56085b4ee3_GH0.tar.gz.
=> SHA256 Checksum OK for LLNL-serac_tests-75d838c69f48a0f263ad68a81d963a0615bed37f_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for serac-g20260327
===> Applying FreeBSD patches for serac-g20260327 from /usr/ports/science/serac/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> serac-g20260327 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.12.pkg
[main-amd64-default-job-11] Installing cmake-core-3.31.12...
[main-amd64-default-job-11] `-- Installing expat-2.8.1...
[main-amd64-default-job-11] `-- Extracting expat-2.8.1: .......... done
[main-amd64-default-job-11] `-- Installing jsoncpp-1.9.6_1...
[main-amd64-default-job-11] `-- Extracting jsoncpp-1.9.6_1: .......... done
[main-amd64-default-job-11] `-- Installing libidn2-2.3.8...
[main-amd64-default-job-11] | `-- Installing indexinfo-0.3.1_1...
[main-amd64-default-job-11] | `-- Extracting indexinfo-0.3.1_1: .... done
[main-amd64-default-job-11] | `-- Installing libunistring-1.4.2...
<snip>
-- CMakeFormat support is OFF
-- Cppcheck support is OFF
-- ClangQuery support is OFF
-- ClangTidy support is OFF
-- ClangApplyReplacements support is ON
-- Failed to locate ClangApplyReplacements executable (missing: CLANGAPPLYREPLACEMENTS_EXECUTABLE)
-- C Compiler family is Clang
-- Adding optional BLT definitions and compiler flags
-- Enabling all compiler warnings on all targets.
-- Enabling treatment of warnings as errors on all targets.
-- Fortran support disabled.
-- CMAKE_C_FLAGS flags are: -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror
-- CMAKE_CXX_FLAGS flags are: -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror
-- CMAKE_EXE_LINKER_FLAGS flags are:
-- CMake's C implicit link directories: /usr/lib
-- CMake's CXX implicit link directories: /usr/lib
-- CMake's C implicit link libraries: gcc;gcc_s;c;gcc;gcc_s
-- CMake's CXX implicit link libraries: c++;m;gcc;gcc_s;c;gcc;gcc_s
-- Using byVDIM degree-of-freedom vector ordering.
-- Smith Code Checks: ON
-- Checking for expected Camp target 'camp'
-- Camp loaded:
-- Camp support is ON
-- Umpire support is OFF
-- RAJA support is OFF
CMake Deprecation Warning at /usr/local/lib/cmake/conduit/ConduitConfig.cmake:15 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package)
cmake/thirdparty/SetupSmithThirdParty.cmake:113 (find_dependency)
CMakeLists.txt:174 (include)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Conduit was built with HDF5 Support
-- Looking for HDF5 at: /usr/local
-- Found HDF5: hdf5-shared (found version "1.12.2")
-- HDF5_DIR_REAL=/usr/local
-- Checking that found HDF5_INCLUDE_DIRS are in HDF5_DIR
-- HDF5_INCLUDE_DIRS=/usr/local/include
-- /usr/local/include includes HDF5_DIR (/usr/local)
-- /usr/local/include includes HDF5_REAL_DIR ()
-- HDF5 is parallel: false
-- Found Conduit: /usr/local (found version 0.9.5)
-- CONDUIT_VERSION = 0.9.5
-- CONDUIT_INSTALL_PREFIX = /usr/local
-- CONDUIT_IMPORT_ROOT = /usr/local
-- CONDUIT_USE_CXX14 = TRUE
-- CONDUIT_USE_FMT = TRUE
-- CONDUIT_USE_CALIPER =
-- CONDUIT_USE_OPENMP = OFF
-- CONDUIT_INCLUDE_DIRS = /usr/local/include/conduit
-- CONDUIT_FORTRAN_ENABLED = TRUE
-- CONDUIT_PYTHON_ENABLED =
-- CONDUIT_PYTHON_EXECUTABLE =
-- CONDUIT_PYTHON_MODULE_DIR = python-modules/
-- CONDUIT_PYTHON_MODULE_CUSTOM_PREFIX = OFF
-- Conduit Relay features:
-- CONDUIT_RELAY_WEBSERVER_ENABLED = TRUE
-- CONDUIT_RELAY_HDF5_ENABLED = TRUE
-- CONDUIT_HDF5_DIR = /usr/local
-- CONDUIT_RELAY_ADIOS_ENABLED = FALSE
-- CONDUIT_ADIOS_DIR =
-- CONDUIT_RELAY_SILO_ENABLED = TRUE
-- CONDUIT_SILO_DIR = /usr/local
-- CONDUIT_RELAY_MPI_ENABLED = TRUE
-- CONDUIT_USE_CMAKE_MPI_TARGETS = TRUE
-- Conduit imported targets: conduit::conduit conduit::conduit_mpi
-- Checking for expected Conduit target 'conduit::conduit'
-- Conduit loaded: /usr/local
-- Conduit support is ON
-- Sundials support is OFF
-- PETSc support is OFF
-- SLEPc support is OFF
-- ARPACK support is FALSE
-- Enzyme support is OFF
-- Using installed MFEM
-- Looking for MFEM using MFEM_DIR = /usr/local
-- Using MFEM's CMake config file
-- Found MFEM: mfem
-- MFEM Includes: /usr/local/include;/usr/local/include
-- MFEM Libraries: mfem
-- Checking for expected MFEM target 'mfem'
-- MFEM loaded: /usr/local
-- Smith Enable Continuation: OFF
-- Using installed Axom
CMake Deprecation Warning at /usr/local/lib/cmake/conduit/ConduitConfig.cmake:15 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
Call Stack (most recent call first):
/usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package)
/usr/local/lib/cmake/axom-config.cmake:187 (find_dependency)
/usr/local/share/cmake/Modules/CMakeFindDependencyMacro.cmake:76 (find_package)
cmake/thirdparty/SetupSmithThirdParty.cmake:452 (find_dependency)
CMakeLists.txt:174 (include)
-- Removing non-existant include directories from Axom's dependencies...
-- Checking for expected Axom target 'axom'
-- Axom loaded: /usr/local
-- Axom support is ON
-- Smith Enable Gretl: ON
-- Configuring Gretl version v0.0.1
-- Gretl Code Checks: OFF
-- Tribol support is OFF
-- Removing non-existant include directories from target[axom]
-- Removing non-existant include directories from target[conduit]
-- Removing non-existant include directories from target[conduit::conduit_mpi]
-- Removing non-existant include directories from target[conduit::conduit]
-- Removing non-existant include directories from target[conduit_relay_mpi]
-- Removing non-existant include directories from target[conduit_relay_mpi_io]
-- Removing non-existant include directories from target[conduit_blueprint]
-- Removing non-existant include directories from target[conduit_blueprint_mpi]
-- Adiak support is OFF
-- Caliper support is OFF
-- Configuring Smith version v0.0.1
-- Configuring done (6.2s)
-- Generating done (0.2s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /wrkdirs/usr/ports/science/serac/work/.build
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for serac-g20260327
[ 1% 3/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_infrastructure_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/accelerator.cpp.o -MF src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/acc
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[ 4% 5/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_infrastructure_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/about.cpp.o -MF src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/about.cpp
.o.d -o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/about.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/about.cpp
[ 5% 6/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_infrastructure_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/logger.cpp.o -MF src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/logger.c
pp.o.d -o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/logger.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/logger.cpp
[ 7% 7/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_infrastructure_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/mpi_fstream.cpp.o -MF src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/mpi
_fstream.cpp.o.d -o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/mpi_fstream.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/mpi_fstream.cpp
[ 8% 8/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_infrastructure_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/input.cpp.o -MF src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/input.cpp
.o.d -o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/input.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/input.cpp
[ 10% 9/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_infrastructure_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/cli.cpp.o -MF src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/cli.cpp.o.d
-o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/cli.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/cli.cpp
[ 11% 10/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_infrastructure_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/profiling.cpp.o -MF src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/prof
iling.cpp.o.d -o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/profiling.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/profiling.cpp
[ 13% 11/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_infrastructure_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/output.cpp.o -MF src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/output.
cpp.o.d -o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/output.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/output.cpp
[ 14% 12/67] : && /usr/bin/c++ -fPIC -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -Wl,-rpath=/usr/local/lib/gcc14 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc14 -Xlinker --dependency-file=src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/link.d -shared -Wl,-soname,libsmith_infrastructure.so -o lib/libsmith_infrastructure.so src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/about.cpp.o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/accelerator.cpp.o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/application_manager.cpp.o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/cli.cpp.o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/input.cpp.o src/smith/infrastructure/CMakeFiles/s
mith_infrastructure.dir/logger.cpp.o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/mpi_fstream.cpp.o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/output.cpp.o src/smith/infrastructure/CMakeFiles/smith_infrastructure.dir/profiling.cpp.o -Wl,-rpath,/usr/local/lib: /usr/local/lib/libaxom_inlet.so /usr/local/lib/libcamp.so /usr/local/lib/libaxom_sidre.so /usr/local/lib/libmfem.so.4.9.0 /usr/local/lib/libHYPRE.so /usr/local/lib/libopenblas.so /usr/local/lib/libmetis.so -Wl,-rpath=/usr/local/lib/gcc14 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc14 /usr/local/lib/libaxom_slic.so /usr/local/lib/libaxom_lumberjack.so /usr/local/lib/libaxom_core.so /usr/local/lib/libmpicxx.so -lexecinfo /usr/local/lib/libconduit_relay_mpi_io.so /usr/local/lib/libconduit_relay.so -lrt -lpthread /usr/local/lib/libhdf5.so.200.2.0 /usr/local/lib/libsiloh5.so -lm -ldl /usr/local/lib/libconduit_blueprint_mpi.so /usr/local/lib/libconduit_blueprint.
so /usr/local/lib/libconduit_relay_mpi.so /usr/local/lib/libconduit.so /usr/local/lib/libmpi.so /usr/local/lib/liblua-5.4.so /usr/lib/libm.so && :
[ 16% 13/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_functional_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/numerics/functional/CMakeFiles/smith_functional.dir/element_restriction.cpp.o -MF src/smith/numerics/functional/CMakeFiles/smith_functional.
dir/element_restriction.cpp.o.d -o src/smith/numerics/functional/CMakeFiles/smith_functional.dir/element_restriction.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp
FAILED: [code=1] src/smith/numerics/functional/CMakeFiles/smith_functional.dir/element_restriction.cpp.o
/usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_functional_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/numerics/functional/CMakeFiles/smith_functional.dir/element_restriction.cpp.o -MF src/smith/numerics/functional/CMakeFiles/smith_functional.dir/element_r
estriction.cpp.o.d -o src/smith/numerics/functional/CMakeFiles/smith_functional.dir/element_restriction.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp
/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp:283:24: error: first argument in call to 'memcpy' is a pointer to non-trivially copyable type 'DoF' [-Werror,-Wnontrivial-memcall]
283 | std::memcpy(output.data(), elem_dofs.data(), sizeof(DoF) * n * dofs_per_elem);
| ^
/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp:283:24: note: explicitly cast the pointer to silence this warning
283 | std::memcpy(output.data(), elem_dofs.data(), sizeof(DoF) * n * dofs_per_elem);
| ^
| (void*)
/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp:349:24: error: first argument in call to 'memcpy' is a pointer to non-trivially copyable type 'DoF' [-Werror,-Wnontrivial-memcall]
349 | std::memcpy(output.data(), elem_dofs.data(), sizeof(DoF) * n * dofs_per_elem);
| ^
/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp:349:24: note: explicitly cast the pointer to silence this warning
349 | std::memcpy(output.data(), elem_dofs.data(), sizeof(DoF) * n * dofs_per_elem);
| ^
| (void*)
/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp:464:24: error: first argument in call to 'memcpy' is a pointer to non-trivially copyable type 'DoF' [-Werror,-Wnontrivial-memcall]
464 | std::memcpy(output.data(), face_dofs.data(), sizeof(DoF) * n * dofs_per_face);
| ^
/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp:464:24: note: explicitly cast the pointer to silence this warning
464 | std::memcpy(output.data(), face_dofs.data(), sizeof(DoF) * n * dofs_per_face);
| ^
| (void*)
/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp:637:24: error: first argument in call to 'memcpy' is a pointer to non-trivially copyable type 'DoF' [-Werror,-Wnontrivial-memcall]
637 | std::memcpy(output.data(), face_dofs.data(), sizeof(DoF) * n * dofs_per_face);
| ^
/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/element_restriction.cpp:637:24: note: explicitly cast the pointer to silence this warning
637 | std::memcpy(output.data(), face_dofs.data(), sizeof(DoF) * n * dofs_per_face);
| ^
| (void*)
4 errors generated.
[ 17% 13/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_mesh_utils_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/mesh_utils/CMakeFiles/smith_mesh_utils.dir/mesh_utils.cpp.o -MF src/smith/mesh_utils/CMakeFiles/smith_mesh_utils.dir/mesh_utils.cpp.o.d -o s
rc/smith/mesh_utils/CMakeFiles/smith_mesh_utils.dir/mesh_utils.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/mesh_utils/mesh_utils.cpp
[ 19% 13/67] /usr/bin/c++ -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -Dsmith_functional_EXPORTS -I/wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/infrastructure/../.. -I/wrkdirs/usr/ports/science/serac/work/.build/include -isystem /usr/local/include -isystem /usr/local/include/conduit -isystem /usr/local/include/json-c -isystem /usr/local/include/gcc14 -isystem /usr/local/include/superlu -isystem /usr/local/include/lua54 -Wall -Wextra -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Werror -Wshadow -Wdouble-promotion -Wconversion -Wundef -Wnull-dereference -Wold-style-cast -Wpedantic -Wunused-private-field -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++20 -fPIC -pthread -DCONDUIT_RELAY_IO_MPI_ENABLED -DCONDUIT_BLUEPRINT_MPI_ENABLED -MD -MT src/smith/numerics/functional/CMakeFiles/smith_functional.dir/domain.cpp.o -MF src/smith/numerics/functional/CMakeFiles/smith_functional.dir/domain.cp
p.o.d -o src/smith/numerics/functional/CMakeFiles/smith_functional.dir/domain.cpp.o -c /wrkdirs/usr/ports/science/serac/work/smith-887c1cb/src/smith/numerics/functional/domain.cpp
ninja: build stopped: subcommand failed.
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/science/serac