From nobody Tue Sep 30 01:29:25 2025 X-Original-To: pkg-fallout@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4cbL7p0Qlwz699Zr for ; Tue, 30 Sep 2025 01:29:26 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R12" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4cbL7n4lRMz3Xpf for ; Tue, 30 Sep 2025 01:29:25 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1759195765; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc; bh=E66I1dGUuvHElkmqfjw9Z1agfNOsS+TpJAliwlWGfH4=; b=Ld4dv9FqRKzZrpAqQYQYYoYK1DcNLuPhh6xfmqRTSQcFECfCu2f8CFV1LwjaO4Ga2VdkJY WtUlmjSpM5e5sRs5EoMs2NYPsoYyN1KsSgsRqY1hyJXwGnNi2nzc2p+yyxSDofDsmwY/re CjLERWKc9SBYPrSp/unk0sTR9Ps3V4ZO4Xkrh4iYj7W23uM94o7czFBZ6msqQyMbOASMF/ 05TaxPLyfG6loBF4XC8bsLMDfgmjzE20BOHjR0d1WNguXfDMqSp4sFDCgU7Wv7WxyLgxHo LS54K4lA73iFshTq+H6mkkin4u8Fkw2WMgLa41Zho/p5dgGnZWP8S/J+VBM9xg== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1759195765; a=rsa-sha256; cv=none; b=xsMWFshWJtrbK1DUH4er7oaCM/sFfTV19RdrbuHEn3gzfRfOIWj/4MEc1E7gykJfbxfdsW O+UbaxcpE/AWBUTtwSlAhCZYl0CYWJqBdnAvOrPVcrXk+2wfRTqiTfFv3bbnSOibURt4ML /iNDYStpHtADDjA5CRuy239z/tYjd/yDTnfoFch/XAcxrKOniC8x502bdPqjIh3q1jTI/z bv0AEBd+u/7VsISvHGIOs1TAfmSQRCa7na4UH3z6YpVm0RHA3Dv1AyepxbCTZjHgFMjqsF 3KItjovNlJoRL+7jaboiQRxbxfKrdiVz+lcA62inrKoC/XVedSWqtjRpa+UFMQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none Received: from beefy14.nyi.freebsd.org (beefy14.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:1d]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4cbL7n4HLPzXB for ; Tue, 30 Sep 2025 01:29:25 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from root (uid 0) (envelope-from pkg-fallout@FreeBSD.org) id 2180 by beefy14.nyi.freebsd.org (DragonFly Mail Agent v0.13+ on beefy14.nyi.freebsd.org); Tue, 30 Sep 2025 01:29:25 +0000 To: yuri@FreeBSD.org Subject: [package - 135amd64-quarterly][biology/viennarna] Failed for viennarna-2.7.0_1 in build Cc: pkg-fallout@FreeBSD.org Date: Tue, 30 Sep 2025 01:29:25 +0000 Message-Id: <68db3275.2180.353734b7@beefy14.nyi.freebsd.org> From: List-Id: Fallout logs from package building List-Archive: https://lists.freebsd.org/archives/freebsd-pkg-fallout List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-freebsd-pkg-fallout@FreeBSD.org You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy14/data/135amd64-quarterly/3dd44c7ee4f1/logs/viennarna-2.7.0_1.log Build URL: https://pkg-status.freebsd.org/beefy14/build.html?mastername=135amd64-quarterly&build=3dd44c7ee4f1 Log: =>> Building biology/viennarna build started at Tue Sep 30 01:24:04 -00 2025 port directory: /usr/ports/biology/viennarna package name: viennarna-2.7.0_1 building for: FreeBSD 135amd64-quarterly-job-07 13.5-RELEASE-p3 FreeBSD 13.5-RELEASE-p3 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1947 Jul 8 01:01 /usr/ports/biology/viennarna/Makefile Ports top last git commit: 3dd44c7ee Ports top unclean checkout: no Port dir last git commit: c4772dbff Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.3-4-ga545ef33 Host OSVERSION: 1600000 Jail OSVERSION: 1305000 Job Id: 07 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p3 UNAME_r=13.5-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.3-4-ga545ef33 MASTERMNT=/usr/local/poudriere/data/.m/135amd64-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/135amd64-quarterly/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=135amd64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/135amd64-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.3-4-ga545ef33 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for viennarna-2.7.0_1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" MAKE=/usr/local/bin/gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/viennarna/work/.cache HOME=/wrkdirs/usr/ports/biology/viennarna/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/viennarna/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/viennarna/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/usr/local/bin/bash CONFIG_SHELL=/usr/local/bin/bash ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPF ILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DEFAULT_AUTOCONF=2.72 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/viennarna/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/viennarna/work/.cache HOME=/wrkdirs/usr/ports/biology/viennarna/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/viennarna/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/viennarna/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr /local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DEFAULT_AUTOCONF=2.72 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -Dregister= -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.40.3 PERL_VER=5.40 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.40 DOCSDIR="share/doc/ViennaRNA" EXAMPLESDIR="share/examples/ViennaRNA" DATADIR="share/viennarna" WWWDIR="www/viennarna" ETCDIR="etc/viennarna" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/viennarna DOCSDIR=/usr/local/share/doc/ViennaRNA EXAMPLESDIR=/usr/local/share/examples/ViennaRNA WWWDIR=/usr/local/www/viennarna ETCDIR=/usr/local/etc/viennarna --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License ViennaRNALicense accepted by the user =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> viennarna-2.7.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.2.2.pkg [135amd64-quarterly-job-07] Installing pkg-2.2.2... [135amd64-quarterly-job-07] Extracting pkg-2.2.2: .......... done ===> viennarna-2.7.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of viennarna-2.7.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License ViennaRNALicense accepted by the user ===> Fetching all distfiles required by viennarna-2.7.0_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License ViennaRNALicense accepted by the user ===> Fetching all distfiles required by viennarna-2.7.0_1 for building => SHA256 Checksum OK for ViennaRNA-2.7.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License ViennaRNALicense accepted by the user ===> Fetching all distfiles required by viennarna-2.7.0_1 for building ===> Extracting for viennarna-2.7.0_1 => SHA256 Checksum OK for ViennaRNA-2.7.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for viennarna-2.7.0_1 ===> Applying FreeBSD patches for viennarna-2.7.0_1 from /usr/ports/biology/viennarna/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> viennarna-2.7.0_1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.2.37.pkg [135amd64-quarterly-job-07] Installing bash-5.2.37... [135amd64-quarterly-job-07] `-- Installing gettext-runtime-0.23.1... [135amd64-quarterly-job-07] | `-- Installing indexinfo-0.3.1_1... [135amd64-quarterly-job-07] | `-- Extracting indexinfo-0.3.1_1: .... done [135amd64-quarterly-job-07] `-- Extracting gettext-runtime-0.23.1: .......... done [135amd64-quarterly-job-07] `-- Installing readline-8.2.13_2... [135amd64-quarterly-job-07] `-- Extracting readline-8.2.13_2: .......... done [135amd64-quarterly-job-07] Extracting bash-5.2.37: .......... done ===> viennarna-2.7.0_1 depends on executable: bash - found ===> Returning to build of viennarna-2.7.0_1 ===> viennarna-2.7.0_1 depends on package: lapacke>0 - not found ===> Installing existing package /packages/All/lapacke-3.12.1.pkg [135amd64-quarterly-job-07] Installing lapacke-3.12.1... [135amd64-quarterly-job-07] `-- Installing blas-3.12.1... [135amd64-quarterly-job-07] | `-- Installing gcc13-13.3.0_3... [135amd64-quarterly-job-07] | | `-- Installing binutils-2.44,1... [135amd64-quarterly-job-07] | | `-- Installing zstd-1.5.7... [135amd64-quarterly-job-07] | | | `-- Installing liblz4-1.10.0,1... [135amd64-quarterly-job-07] | | | `-- Extracting liblz4-1.10.0,1: .......... done [135amd64-quarterly-job-07] | | `-- Extracting zstd-1.5.7: .......... done | ^ ../dlib-19.24/dlib/all/../bigint/../unicode/unicode.h:509:18: note: in instantiation of member function 'std::basic_string::push_back' requested here 509 | temp.push_back(ch); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2912:3: error: implicit instantiation of undefined template 'std::char_traits' 2912 | traits_type::assign(*++__p, value_type()); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2535:5: error: implicit instantiation of undefined template 'std::char_traits' 2535 | traits_type::copy(std::__to_address(__p), std::__to_address(__old_p), __n_copy); | ^ /usr/include/c++/v1/string:2556:3: note: in instantiation of member function 'std::basic_string::__grow_by' requested here 2556 | __grow_by(__old_cap, __delta_cap, __old_sz, __n_copy, __n_del, __n_add); | ^ /usr/include/c++/v1/string:2898:5: note: in instantiation of member function 'std::basic_string::__grow_by_without_replace' requested here 2898 | __grow_by_without_replace(__cap, 1, __sz, __sz, 0); | ^ ../dlib-19.24/dlib/all/../bigint/../unicode/unicode.h:509:18: note: in instantiation of member function 'std::basic_string::push_back' requested here 509 | temp.push_back(ch); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2538:5: error: implicit instantiation of undefined template 'std::char_traits' 2538 | traits_type::copy( | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2861:5: error: implicit instantiation of undefined template 'std::char_traits' 2861 | traits_type::assign(std::__to_address(__p) + __sz, __n, __c); | ^ /usr/include/c++/v1/string:3302:5: note: in instantiation of member function 'std::basic_string::append' requested here 3302 | append(__n - __sz, __c); | ^ /usr/include/c++/v1/string:1303:84: note: in instantiation of member function 'std::basic_string::resize' requested here 1303 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX20 void resize(size_type __n) { resize(__n, value_type()); } | ^ ../dlib-19.24/dlib/all/../bigint/../serialize.h:2011:14: note: in instantiation of member function 'std::basic_string::resize' requested here 2011 | item.resize(size); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2864:5: error: implicit instantiation of undefined template 'std::char_traits' 2864 | traits_type::assign(__p[__sz], value_type()); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2221:5: error: implicit instantiation of undefined template 'std::char_traits' 2221 | traits_type::assign(__p[__newsz], value_type()); | ^ /usr/include/c++/v1/string:2134:5: note: in instantiation of member function 'std::basic_string::__null_terminate_at' requested here 2134 | __null_terminate_at(std::__to_address(__get_pointer()), __pos); | ^ /usr/include/c++/v1/string:3304:5: note: in instantiation of member function 'std::basic_string::__erase_to_end' requested here 3304 | __erase_to_end(__n); | ^ /usr/include/c++/v1/string:1303:84: note: in instantiation of member function 'std::basic_string::resize' requested here 1303 | _LIBCPP_HIDE_FROM_ABI _LIBCPP_CONSTEXPR_SINCE_CXX20 void resize(size_type __n) { resize(__n, value_type()); } | ^ ../dlib-19.24/dlib/all/../bigint/../serialize.h:2011:14: note: in instantiation of member function 'std::basic_string::resize' requested here 2011 | item.resize(size); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2825:29: error: implicit instantiation of undefined template 'std::char_traits' 2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s)) | ^ ../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string::assign' requested here 54 | dest.assign((const unichar *)(src)); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2825:77: error: implicit instantiation of undefined template 'std::char_traits' 2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s)) | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2826:80: error: implicit instantiation of undefined template 'std::char_traits' 2826 | : __assign_external(__s, traits_type::length(__s))) | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2208:5: error: implicit instantiation of undefined template 'std::char_traits' 2208 | traits_type::move(std::__to_address(__p), __s, __n); | ^ /usr/include/c++/v1/string:2825:57: note: in instantiation of member function 'std::basic_string::__assign_short' requested here 2825 | ? (__fits_in_sso(traits_type::length(__s)) ? __assign_short(__s, traits_type::length(__s)) | ^ ../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string::assign' requested here 54 | dest.assign((const unichar *)(src)); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2209:5: error: implicit instantiation of undefined template 'std::char_traits' 2209 | traits_type::assign(__p[__n], value_type()); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:11: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.cpp:6: In file included from ../dlib-19.24/dlib/all/../base64/base64_kernel_1.h:6: In file included from ../dlib-19.24/dlib/all/../base64/../algs.h:97: /usr/include/c++/v1/string:2817:33: error: implicit instantiation of undefined template 'std::char_traits' 2817 | return __assign_external(__s, traits_type::length(__s)); | ^ /usr/include/c++/v1/string:2827:14: note: in instantiation of member function 'std::basic_string::__assign_external' requested here 2827 | : __assign_external(__s); | ^ ../dlib-19.24/dlib/all/../unicode/unicode.cpp:54:14: note: in instantiation of member function 'std::basic_string::assign' requested here 54 | dest.assign((const unichar *)(src)); | ^ /usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here 23 | struct _LIBCPP_TEMPLATE_VIS char_traits; | ^ In file included from ../dlib-19.24/dlib/all/source.cpp:82: In file included from ../dlib-19.24/dlib/all/../cuda/cpu_dlib.cpp:8: In file included from ../dlib-19.24/dlib/all/../cuda/cpu_dlib.h:9: In file included from ../dlib-19.24/dlib/all/../cuda/tensor.h:8: In file included from ../dlib-19.24/dlib/all/../cuda/../matrix.h:6: ../dlib-19.24/dlib/all/../cuda/../matrix/matrix.h:1153:47: warning: division by zero is undefined [-Wdivision-by-zero] 1153 | data.set_size(NR, l.size()/NR); | ^~~ ../dlib-19.24/dlib/all/../svm/auto.cpp:78:13: note: in instantiation of member function 'dlib::matrix::matrix' requested here 78 | {1e-5, 1e-5, 1e-5}, // lower bound constraints on gamma, c1, and c2, respectively | ^ 1 warning and 17 errors generated. gmake[4]: *** [Makefile:2588: ../dlib-19.24/dlib/all/libRNA_concentrations_la-source.lo] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src/ViennaRNA' gmake[3]: *** [Makefile:3218: all-recursive] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src/ViennaRNA' gmake[2]: *** [Makefile:566: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0/src' gmake[1]: *** [Makefile:746: all-recursive] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/viennarna/work/ViennaRNA-2.7.0' gmake: *** [Makefile:627: all] Error 2 ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/viennarna