[package - 135amd64-default][science/dakota] Failed for dakota-6.22.0 in configure
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Date: Fri, 26 Sep 2025 16:45:49 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/135amd64-default/fcc5efebc7d0/logs/dakota-6.22.0.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=135amd64-default&build=fcc5efebc7d0
Log:
=>> Building science/dakota
build started at Fri Sep 26 16:43:51 -00 2025
port directory: /usr/ports/science/dakota
package name: dakota-6.22.0
building for: FreeBSD 135amd64-default-job-10 13.5-RELEASE-p3 FreeBSD 13.5-RELEASE-p3 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 3961 Jun 17 01:03 /usr/ports/science/dakota/Makefile
Ports top last git commit: fcc5efebc7d
Ports top unclean checkout: no
Port dir last git commit: fc3eb50a2b4
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.3
Host OSVERSION: 1600000
Jail OSVERSION: 1305000
Job Id: 10
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yuri@FreeBSD.org
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> dakota-6.22.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.3.1.pkg
[135amd64-default-job-10] Installing pkg-2.3.1...
[135amd64-default-job-10] Extracting pkg-2.3.1: .......... done
===> dakota-6.22.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of dakota-6.22.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by dakota-6.22.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by dakota-6.22.0 for building
=> SHA256 Checksum OK for dakota-6.22.0-public-src-cli.tar.gz.
=> SHA256 Checksum OK for stan-dev-math-v2.18.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License LGPL21 accepted by the user
===> Fetching all distfiles required by dakota-6.22.0 for building
===> Extracting for dakota-6.22.0
=> SHA256 Checksum OK for dakota-6.22.0-public-src-cli.tar.gz.
=> SHA256 Checksum OK for stan-dev-math-v2.18.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for dakota-6.22.0
===> Applying FreeBSD patches for dakota-6.22.0 from /usr/ports/science/dakota/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> dakota-6.22.0 depends on package: nanoflann>0 - not found
===> Installing existing package /packages/All/nanoflann-1.6.3.pkg
[135amd64-default-job-10] Installing nanoflann-1.6.3...
[135amd64-default-job-10] Extracting nanoflann-1.6.3: ........ done
===> dakota-6.22.0 depends on package: nanoflann>0 - found
===> Returning to build of dakota-6.22.0
===> dakota-6.22.0 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.7_1.pkg
[135amd64-default-job-10] Installing cmake-core-3.31.7_1...
[135amd64-default-job-10] `-- Installing expat-2.7.2...
[135amd64-default-job-10] `-- Extracting expat-2.7.2: .......... done
[135amd64-default-job-10] `-- Installing jsoncpp-1.9.6_1...
[135amd64-default-job-10] `-- Extracting jsoncpp-1.9.6_1: .......... done
[135amd64-default-job-10] `-- Installing libidn2-2.3.8...
[135amd64-default-job-10] | `-- Installing indexinfo-0.3.1_1...
[135amd64-default-job-10] | `-- Extracting indexinfo-0.3.1_1: .... done
[135amd64-default-job-10] | `-- Installing libunistring-1.3...
[135amd64-default-job-10] | `-- Extracting libunistring-1.3: .......... done
[135amd64-default-job-10] `-- Extracting libidn2-2.3.8: .......... done
[135amd64-default-job-10] `-- Installing libuv-1.51.0...
[135amd64-default-job-10] `-- Extracting libuv-1.51.0: .......... done
[135amd64-default-job-10] `-- Installing rhash-1.4.4_1...
[135amd64-default-job-10] | `-- Installing gettext-runtime-0.23.1...
[135amd64-default-job-10] | `-- Extracting gettext-runtime-0.23.1: .......... done
<snip>
CMake Warning (dev) at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:441 (message):
The package name passed to `find_package_handle_standard_args` (BOOST) does
not match the name of the calling package (BOOSTMUQ). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
packages/external/muq2/cmake/finds/FindBOOSTMUQ.cmake:61 (find_package_handle_standard_args)
packages/external/muq2/cmake/finds/RequiredDependencySearch.cmake:112 (find_package)
packages/external/muq2/cmake/DependencySearch.cmake:2 (include)
packages/external/muq2/CMakeLists.txt:75 (INCLUDE)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found BOOST: /usr/local/lib/libboost_filesystem.so;/usr/local/lib/libboost_graph.so
-- Performing Test BOOST_GRAPH_COMPILES
-- Performing Test BOOST_GRAPH_COMPILES - Success
-- “MUQ_USE_GTESTisOFF.Turningofftests.”
EIGEN3HDF5BOOST
CMake Warning at packages/external/muq2/cmake/DependencyCheck.cmake:23 (message):
MUQ_USE_GTEST is OFF. Thus, all tests has been turned off.
Call Stack (most recent call first):
packages/external/muq2/CMakeLists.txt:85 (INCLUDE)
-- Turning off UTILITIES_CORE_PYTHON because of a missing library dependency.
-- Turning off MODELING_CORE_PYTHON because of a missing library dependency.
-- Turning off MODELING_SUNDIALS_MODELS_PYTHON because of a missing library dependency.
-- Turning off OPTIMIZATION_CORE_PYTHON because of a missing library dependency.
-- Turning off APPROXIMATION_CORE_PYTHON because of a missing library dependency.
-- Turning off SAMPLINGALGORITHMS_CORE_PYTHON because of a missing library dependency.
-- Turning off INFERENCE_FILTERING_PYTHON because of a missing library dependency.
MUQ_LINK_LIBS = OpenMP::OpenMP_CXX;/usr/local/lib/libhdf5.so;/usr/local/lib/libhdf5_hl.so
-- Creating muqUtilities target.
-- Checking for dependency of muqUtilities on internal build of EIGEN3
-- Checking for dependency of muqUtilities on internal build of HDF5
-- Checking for dependency of muqUtilities on internal build of BOOST
-- Creating muqModeling target.
-- Checking for dependency of muqModeling on internal build of EIGEN3
-- Checking for dependency of muqModeling on internal build of HDF5
-- Checking for dependency of muqModeling on internal build of BOOST
-- Creating muqSamplingAlgorithms target.
-- Checking for dependency of muqSamplingAlgorithms on internal build of EIGEN3
-- Checking for dependency of muqSamplingAlgorithms on internal build of HDF5
-- Checking for dependency of muqSamplingAlgorithms on internal build of BOOST
-- Thinking about connection between muqModeling and muqModeling
-- Thinking about connection between muqModeling and muqUtilities
-- Trying to add connection between muqModeling and muqUtilities
-- Thinking about connection between muqModeling and muqModeling
-- Thinking about connection between muqModeling and muqModeling
-- Thinking about connection between muqModeling and muqUtilities
-- Trying to add connection between muqModeling and muqUtilities
-- Thinking about connection between muqSamplingAlgorithms and muqModeling
-- Trying to add connection between muqSamplingAlgorithms and muqModeling
-- Thinking about connection between muqSamplingAlgorithms and muqUtilities
-- Trying to add connection between muqSamplingAlgorithms and muqUtilities
-- Thinking about connection between muqSamplingAlgorithms and muqUtilities
-- Trying to add connection between muqSamplingAlgorithms and muqUtilities
-- Thinking about connection between muqSamplingAlgorithms and muqUtilities
-- Trying to add connection between muqSamplingAlgorithms and muqUtilities
-- Thinking about connection between muqSamplingAlgorithms and muqModeling
-- Trying to add connection between muqSamplingAlgorithms and muqModeling
-- Thinking about connection between muqSamplingAlgorithms and muqModeling
-- Trying to add connection between muqSamplingAlgorithms and muqModeling
-- Thinking about connection between muqSamplingAlgorithms and muqSamplingAlgorithms
-- Storing MUQ_COMPILE_DEFINITIONS = HAVE_CONFIG_H;BOOST_NO_CXX98_FUNCTION_BASE;_HAS_AUTO_PTR_ETC=0;HAVE_ROL;HAVE_DAKOTA_SURROGATES
-- MUQ_LIBRARIES = muqUtilities;muqModeling;muqSamplingAlgorithms
-- MUQ_EXPORT_LIBRARIES = /usr/local/lib/libmuqUtilities.so;/usr/local/lib/libmuqModeling.so;/usr/local/lib/libmuqSamplingAlgorithms.so
#############################################
#
# MUQ configuration:
# CMAKE_BUILD_TYPE: Release
# BUILD_SHARED_LIBS: ON
# BUILD_STATIC_LIBS:
# CMAKE_INSTALL_PREFIX: /usr/local
# CMAKE_SOURCE_DIR: /wrkdirs/usr/ports/science/dakota/work/dakota-6.22.0-public-src-cli
# CMAKE_BINARY_DIR: /wrkdirs/usr/ports/science/dakota/work/.build
# CMAKE_CXX_COMPILER name: Clang 19.1.7 on platform FreeBSD amd64
# CMAKE_CXX_COMPILER path: /usr/ports/science/dakota/files/fake-c++.sh
#
# Compiler flags used for this build:
# CMAKE_CXX_FLAGS: -O2 -pipe -DH5_USE_110_API=1 -fstack-protector-strong -fno-strict-aliasing -DH5_USE_110_API -pthread -ldl -O3
#
# Compiler definitions used for this build:
# COMPILE_DEFINITIONS: HAVE_CONFIG_H;BOOST_NO_CXX98_FUNCTION_BASE;_HAS_AUTO_PTR_ETC=0;HAVE_ROL;HAVE_DAKOTA_SURROGATES
#
# Required dependencies:
# EIGEN3 ----------------> Met with existing library:
# Include Directory:
# /wrkdirs/usr/ports/science/dakota/work/dakota-6.22.0-public-src-cli/packages/external/eigen3/include/eigen3
#
# BOOST -----------------> Met with existing library:
# Include Directory:
# /usr/local/include
#
# HDF5 ------------------> Met with existing library:
# Include Directory:
# /usr/local/include
# Libraries:
# /usr/local/lib/libhdf5.so
# /usr/local/lib/libhdf5_hl.so
#
# NANOFLANN -------------> Not required for selected compile groups.
#
# SUNDIALS --------------> Not required for selected compile groups.
#
# NLOPT -----------------> Not required for selected compile groups.
#
# PARCER ----------------> Not required for selected compile groups.
#
# SPDLOG ----------------> Not required for selected compile groups.
#
# OTF2 ------------------> Not required for selected compile groups.
#
# STANMATH --------------> Not required for selected compile groups.
#
#
# Optional dependencies:
# GTEST: ----------------> OFF.
#
#
# Optional tools:
# MPI: -----------------> OFF
#
# MUQ Modules:
# Utilities:
# Modeling:
# SamplingAlgorithms:
#
# MUQ Libraries:
# muqUtilities;muqModeling;muqSamplingAlgorithms
#############################################
Found JSON header file
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for system
-- Looking for system - found
-- Looking for fork
-- Looking for fork - found
-- Looking for vfork
-- Looking for vfork - found
-- Looking for wait
-- Looking for wait - found
-- Looking for pdb.h
-- Looking for pdb.h - not found
=========[ Have ROL ]========
-- Dakota_LIBRARIES: dakota_util;dakota_surrogates;dakota_src;dakota_src_fortran;nidr;TeuchosRemainder::teuchosremainder;TeuchosNumerics::teuchosnumerics;TeuchosComm::teuchoscomm;TeuchosParameterList::teuchosparameterlist;TeuchosParser::teuchosparser;TeuchosCore::teuchoscore;pecos_util;pecos_src;lhs;lhs_mods;lhs_mod;dfftpack;sparsegrid;surfpack;surfpack;surfpack_fortran;utilib;colin;interfaces;scolib;3po;pebbl;tinyxml;approxnn;queso;conmin;ddace;dream;fsudace;hopspack;jega;jega_fe;moga;soga;eutils;utilities;ncsuopt;cport;nomad;optpp;muqUtilities;muqModeling;muqSamplingAlgorithms;psuade;dakota_sciplot;amplsolver
-- Dakota_TPL_LIBRARIES: hdf5_hl-shared;hdf5_hl_cpp-shared;hdf5-shared;hdf5_cpp-shared;/usr/local/lib/libXm.so;/usr/local/lib/libXmu.so;/usr/local/lib/libXt.so;/usr/local/lib/libXext.so;/usr/local/lib/libXpm.so;/usr/local/lib/libXrender.so;/usr/local/lib/libX11.so;/usr/local/lib/libXft.so;/usr/local/lib/libSM.so;/usr/local/lib/libICE.so;/usr/local/lib/libXau.so;/usr/local/lib/libXdmcp.so;/usr/local/lib/libSM.so;/usr/local/lib/libICE.so;/usr/local/lib/libX11.so;/usr/local/lib/libXext.so;-lpthread;/usr/local/lib/libgsl.so;/usr/local/lib/libgslcblas.so;/usr/local/lib/liblapack.so;/usr/local/lib/libblas.so;/usr/local/lib/libboost_filesystem.so;/usr/local/lib/libboost_program_options.so;/usr/local/lib/libboost_regex.so;/usr/local/lib/libboost_serialization.so
-- Installing Dakota exported targets to lib/cmake/Dakota
-- Configuring done (32.9s)
CMake Error at cmake/DakotaUnitTest.cmake:29 (target_link_libraries):
Target "surrogates_polynomial_regression" links to:
Boost::system
but the target was not found. Possible reasons include:
* There is a typo in the target name.
* A find_package call is missing for an IMPORTED target.
* An ALIAS target is missing.
Call Stack (most recent call first):
src/surrogates/unit/CMakeLists.txt:26 (dakota_add_unit_test)
CMake Error at src/CMakeLists.txt:917 (target_link_libraries):
Target "dakota_src" links to:
Boost::system
but the target was not found. Possible reasons include:
* There is a typo in the target name.
* A find_package call is missing for an IMPORTED target.
* An ALIAS target is missing.
-- Generating done (1.2s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_MODULE_LINKER_FLAGS
DAKOTA_GIT_checkout
Dakota_GIT_REVL
FETCHCONTENT_FULLY_DISCONNECTED
MUQ_STANMATH_DIR
Python_ADDITIONAL_VERSIONS
CMake Generate step failed. Build files cannot be regenerated correctly.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/dakota