[package - 135amd64-default][math/py-mathics] Failed for py311-Mathics3-9.0.0 in run-depends
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Date: Sat, 13 Sep 2025 22:27:55 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: thierry@FreeBSD.org Log URL: https://pkg-status.freebsd.org/beefy16/data/135amd64-default/56c5cbbc8d99/logs/py311-Mathics3-9.0.0.log Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=135amd64-default&build=56c5cbbc8d99 Log: =>> Building math/py-mathics build started at Sat Sep 13 22:22:56 UTC 2025 port directory: /usr/ports/math/py-mathics package name: py311-Mathics3-9.0.0 building for: FreeBSD 135amd64-default-job-12 13.5-RELEASE-p3 FreeBSD 13.5-RELEASE-p3 amd64 maintained by: thierry@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 4182 Sep 9 01:03 /usr/ports/math/py-mathics/Makefile Ports top last git commit: 56c5cbbc8d9 Ports top unclean checkout: no Port dir last git commit: 757e803b3b9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.3 Host OSVERSION: 1500052 Jail OSVERSION: 1305000 Job Id: 12 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p3 UNAME_r=13.5-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.3 MASTERMNT=/usr/local/poudriere/data/.m/135amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/135amd64-default/12/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=135amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/135amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.3 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- thierry@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-mathics/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-mathics/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-mathics/work/.cache HOME=/wrkdirs/usr/ports/math/py-mathics/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-mathics/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-mathics/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- USE_CYTHON=yes XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-mathics/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-mathics/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/py-mathics/work/.cache HOME=/wrkdirs/usr/ports/math/py-mathics/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-mathics/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/py-mathics/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -s " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INS TALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VER=9.0.0 PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/Mathics3" EXAMPLESDIR="share/examples/Mathics3" DATADIR="share/Mathics3" WWWDIR="www/Mathics3" ETCDIR="etc/Mathics3" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Mathics3 DOCSDIR=/usr/local/share/doc/Mathics3 EXAMPLESDIR=/usr/local/share/examples/Mathics3 WWWDIR=/usr/local/www/Mathics3 ETCDIR=/usr/local/etc/Mathics3 --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3+ accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-Mathics3-9.0.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.3.1.pkg [135amd64-default-job-12] Installing pkg-2.3.1... [135amd64-default-job-12] Extracting pkg-2.3.1: .......... done ===> py311-Mathics3-9.0.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-Mathics3-9.0.0 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by py311-Mathics3-9.0.0 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by py311-Mathics3-9.0.0 for building => SHA256 Checksum OK for mathics3-9.0.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv3+ accepted by the user ===> Fetching all distfiles required by py311-Mathics3-9.0.0 for building ===> Extracting for py311-Mathics3-9.0.0 => SHA256 Checksum OK for mathics3-9.0.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-Mathics3-9.0.0 ===> Applying FreeBSD patches for py311-Mathics3-9.0.0 from /usr/ports/math/py-mathics/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-Mathics3-9.0.0 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_7,1.pkg [135amd64-default-job-12] Installing py311-numpy-1.26.4_7,1... [135amd64-default-job-12] `-- Installing gcc13-13.3.0_3... [135amd64-default-job-12] | `-- Installing binutils-2.44,1... [135amd64-default-job-12] | | `-- Installing indexinfo-0.3.1_1... [135amd64-default-job-12] | | `-- Extracting indexinfo-0.3.1_1: .... done [135amd64-default-job-12] | | `-- Installing zstd-1.5.7... [135amd64-default-job-12] | | `-- Installing liblz4-1.10.0,1... [135amd64-default-job-12] | | `-- Extracting liblz4-1.10.0,1: .......... done [135amd64-default-job-12] | | `-- Extracting zstd-1.5.7: .......... done [135amd64-default-job-12] | `-- Extracting binutils-2.44,1: .......... done [135amd64-default-job-12] | `-- Installing gmp-6.3.0... [135amd64-default-job-12] | `-- Extracting gmp-6.3.0: .......... done [135amd64-default-job-12] | `-- Installing mpc-1.3.1_1... [135amd64-default-job-12] | | `-- Installing mpfr-4.2.2,1... [135amd64-default-job-12] | | `-- Extracting mpfr-4.2.2,1: .......... done [135amd64-default-job-12] | `-- Extracting mpc-1.3.1_1: ......... done [135amd64-default-job-12] `-- Extracting gcc13-13.3.0_3: .......... done [135amd64-default-job-12] `-- Installing openblas-0.3.30,2... [135amd64-default-job-12] `-- Extracting openblas-0.3.30,2: .......... done [135amd64-default-job-12] `-- Installing python311-3.11.13_1... [135amd64-default-job-12] | `-- Installing gettext-runtime-0.23.1... [135amd64-default-job-12] | `-- Extracting gettext-runtime-0.23.1: .......... done [135amd64-default-job-12] | `-- Installing libffi-3.5.1... [135amd64-default-job-12] | `-- Extracting libffi-3.5.1: .......... done <snip> adding 'mathics/compile/utils.py' adding 'mathics/core/__init__.py' adding 'mathics/core/assignment.py' adding 'mathics/core/atoms-try.py' adding 'mathics/core/atoms.py' adding 'mathics/core/attributes.py' adding 'mathics/core/builtin.py' adding 'mathics/core/definitions.py' adding 'mathics/core/element.py' adding 'mathics/core/evaluation.py' adding 'mathics/core/exceptions.py' adding 'mathics/core/expression-try.py' adding 'mathics/core/expression.cpython-311.so' adding 'mathics/core/expression.py' adding 'mathics/core/expression_predefined.py' adding 'mathics/core/formatter.py' adding 'mathics/core/interrupt.py' adding 'mathics/core/keycomparable.py' adding 'mathics/core/list.py' adding 'mathics/core/load_builtin.py' adding 'mathics/core/number.cpython-311.so' adding 'mathics/core/number.py' adding 'mathics/core/pattern.cpython-311.so' adding 'mathics/core/pattern.py' adding 'mathics/core/rules.cpython-311.so' adding 'mathics/core/rules.py' adding 'mathics/core/streams.py' adding 'mathics/core/structure.py' adding 'mathics/core/subexpression.py' adding 'mathics/core/symbols.cpython-311.so' adding 'mathics/core/symbols.py' adding 'mathics/core/systemsymbols.py' adding 'mathics/core/util.py' adding 'mathics/core/convert/__init__.py' adding 'mathics/core/convert/expression.py' adding 'mathics/core/convert/function.py' adding 'mathics/core/convert/matrix.py' adding 'mathics/core/convert/mpmath.py' adding 'mathics/core/convert/op.py' adding 'mathics/core/convert/python.py' adding 'mathics/core/convert/regex.py' adding 'mathics/core/convert/sympy.py' adding 'mathics/core/parser/__init__.py' adding 'mathics/core/parser/ast-with-node.py' adding 'mathics/core/parser/ast.py' adding 'mathics/core/parser/convert.py' adding 'mathics/core/parser/feed.py' adding 'mathics/core/parser/location.py' adding 'mathics/core/parser/operators.py' adding 'mathics/core/parser/parser.py' adding 'mathics/core/parser/util.py' adding 'mathics/data/doctest_latex_data.pcl' adding 'mathics/data/op-tables.json' adding 'mathics/data/operator-tables.json' adding 'mathics/data/ExampleData/BloodToilTearsSweat.txt' adding 'mathics/data/ExampleData/Einstein.jpg' adding 'mathics/data/ExampleData/EinsteinSzilLetter.txt' adding 'mathics/data/ExampleData/ExampleData.txt' adding 'mathics/data/ExampleData/InventionNo1.xml' adding 'mathics/data/ExampleData/MadTeaParty.gif' adding 'mathics/data/ExampleData/Middlemarch.txt' adding 'mathics/data/ExampleData/Namespaces.xml' adding 'mathics/data/ExampleData/PrimeMeridian.html' adding 'mathics/data/ExampleData/Testosterone.svg' adding 'mathics/data/ExampleData/TextRecognize.png' adding 'mathics/data/ExampleData/benzene.xyz' adding 'mathics/data/ExampleData/bignum.txt' adding 'mathics/data/ExampleData/colors.json' adding 'mathics/data/ExampleData/copyright.csv' adding 'mathics/data/ExampleData/hedy.tif' adding 'mathics/data/ExampleData/language.txt' adding 'mathics/data/ExampleData/moon.tif' adding 'mathics/data/ExampleData/numberdata.csv' adding 'mathics/data/ExampleData/numbers.txt' adding 'mathics/data/ExampleData/sentences.txt' adding 'mathics/data/ExampleData/strings.txt' adding 'mathics/data/ExampleData/sunflowers.jpg' adding 'mathics/data/ExampleData/words.txt' adding 'mathics/doc/__init__.py' adding 'mathics/doc/common_doc.py' adding 'mathics/doc/doc_entries.py' adding 'mathics/doc/gather.py' adding 'mathics/doc/latex_doc.py' adding 'mathics/doc/online.py' adding 'mathics/doc/structure.py' adding 'mathics/doc/utils.py' adding 'mathics/doc/documentation/1-Manual.mdoc' adding 'mathics/doc/documentation/A-License.mdoc' adding 'mathics/doc/latex/doc2latex.py' adding 'mathics/eval/__init__.py' adding 'mathics/eval/arithmetic.py' adding 'mathics/eval/datetime.py' adding 'mathics/eval/directories.py' adding 'mathics/eval/hyperbolic.py' adding 'mathics/eval/image.py' adding 'mathics/eval/inference.py' adding 'mathics/eval/lists.py' adding 'mathics/eval/math_ops.py' adding 'mathics/eval/nevaluator.cpython-311.so' adding 'mathics/eval/nevaluator.py' adding 'mathics/eval/numeric.py' adding 'mathics/eval/numerify.py' adding 'mathics/eval/parts.py' adding 'mathics/eval/patterns.py' adding 'mathics/eval/pymathics.py' adding 'mathics/eval/quantities.py' adding 'mathics/eval/rules.py' adding 'mathics/eval/scoping.py' adding 'mathics/eval/stackframe.py' adding 'mathics/eval/strings.py' adding 'mathics/eval/sympy.py' adding 'mathics/eval/tensors.py' adding 'mathics/eval/test.cpython-311.so' adding 'mathics/eval/test.py' adding 'mathics/eval/testing_expressions.py' adding 'mathics/eval/tracing.py' adding 'mathics/eval/arithfns/__init__.py' adding 'mathics/eval/arithfns/basic.py' adding 'mathics/eval/assignments/__init__.py' adding 'mathics/eval/assignments/assign_binaryop.py' adding 'mathics/eval/assignments/assignment.py' adding 'mathics/eval/binary/__init__.py' adding 'mathics/eval/binary/io.py' adding 'mathics/eval/distance/__init__.py' adding 'mathics/eval/distance/clusters.py' adding 'mathics/eval/distance/numeric.py' adding 'mathics/eval/drawing/__init__.py' adding 'mathics/eval/drawing/charts.py' adding 'mathics/eval/drawing/colors.py' adding 'mathics/eval/drawing/plot.py' adding 'mathics/eval/drawing/plot3d.py' adding 'mathics/eval/files_io/__init__.py' adding 'mathics/eval/files_io/files.py' adding 'mathics/eval/files_io/read.py' adding 'mathics/eval/functional/__init__.py' adding 'mathics/eval/functional/apply_fns_to_lists.py' adding 'mathics/eval/list/__init__.py' adding 'mathics/eval/list/eol.py' adding 'mathics/eval/makeboxes/__init__.py' adding 'mathics/eval/makeboxes/formatvalues.py' adding 'mathics/eval/makeboxes/makeboxes.py' adding 'mathics/eval/makeboxes/numberform.py' adding 'mathics/eval/makeboxes/operators.py' adding 'mathics/eval/makeboxes/outputforms.py' adding 'mathics/eval/makeboxes/precedence.py' adding 'mathics/eval/numbers/__init__.py' adding 'mathics/eval/numbers/numbers.py' adding 'mathics/eval/numbers/algebra/__init__.py' adding 'mathics/eval/numbers/algebra/simplify.py' adding 'mathics/eval/numbers/calculus/__init__.py' adding 'mathics/eval/numbers/calculus/integrators.py' adding 'mathics/eval/numbers/calculus/optimizers.py' adding 'mathics/eval/numbers/calculus/series.py' adding 'mathics/eval/specialfns/hypergeom.py' adding 'mathics/eval/symbolic_history/__init__.py' adding 'mathics/eval/symbolic_history/stack.py' adding 'mathics/format/__init__.py' adding 'mathics/format/asy.py' adding 'mathics/format/asy_fns.py' adding 'mathics/format/asy_polyhedra.py' adding 'mathics/format/json.py' adding 'mathics/format/latex.py' adding 'mathics/format/mathml.py' adding 'mathics/format/svg.py' adding 'mathics/format/text.py' adding 'Mathics3-9.0.0.dist-info/AUTHORS.txt' adding 'Mathics3-9.0.0.dist-info/METADATA' adding 'Mathics3-9.0.0.dist-info/WHEEL' adding 'Mathics3-9.0.0.dist-info/entry_points.txt' adding 'Mathics3-9.0.0.dist-info/top_level.txt' adding 'Mathics3-9.0.0.dist-info/RECORD' removing build/bdist.freebsd-13.5-RELEASE-p3-amd64/wheel Successfully built Mathics3-9.0.0-cp311-cp311-freebsd_13_5_release_p3_amd64.whl =========================================================================== =======================<phase: run-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-Mathics3-9.0.0 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-Mathics3-9.0.0 depends on package: py311-pillow>=7.0.0 - found ===> py311-Mathics3-9.0.0 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.3.3_1.pkg [135amd64-default-job-12] Installing bash-5.3.3_1... [135amd64-default-job-12] Extracting bash-5.3.3_1: .......... done ===> py311-Mathics3-9.0.0 depends on executable: bash - found ===> Returning to build of py311-Mathics3-9.0.0 ===> py311-Mathics3-9.0.0 depends on package: py311-py>0 - not found ===> Installing existing package /packages/All/py311-py-1.11.0_2.pkg [135amd64-default-job-12] Installing py311-py-1.11.0_2... [135amd64-default-job-12] Extracting py311-py-1.11.0_2: .......... done ===> py311-Mathics3-9.0.0 depends on package: py311-py>0 - found ===> Returning to build of py311-Mathics3-9.0.0 ===> py311-Mathics3-9.0.0 depends on package: py311-lxml5>0 - not found ===> Installing existing package /packages/All/py311-lxml5-5.4.0_2.pkg [135amd64-default-job-12] Installing py311-lxml5-5.4.0_2... pkg-static: py311-lxml5-5.4.0_2 conflicts with py311-lxml-6.0.1 (installs files into the same place). Problematic file: /usr/local/lib/python3.11/site-packages/lxml/ElementInclude.py Failed to install the following 1 package(s): /packages/All/py311-lxml5-5.4.0_2.pkg *** Error code 1 Stop. make: stopped in /usr/ports/math/py-mathics