[package - main-armv7-default][math/R-cran-sf] Failed for R-cran-sf-1.0.21_1 in stage
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Date: Thu, 11 Sep 2025 23:12:21 UTC
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/p6fecc51c6cfb_s1344979687/logs/R-cran-sf-1.0.21_1.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=p6fecc51c6cfb_s1344979687 Log: =>> Building math/R-cran-sf build started at Thu Sep 11 22:58:33 UTC 2025 port directory: /usr/ports/math/R-cran-sf package name: R-cran-sf-1.0.21_1 building for: FreeBSD main-armv7-default-job-01 15.0-PRERELEASE FreeBSD 15.0-PRERELEASE 1500063 arm maintained by: wen@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 805 Jun 14 01:02 /usr/ports/math/R-cran-sf/Makefile Ports top last git commit: 6fecc51c6cf Ports top unclean checkout: no Port dir last git commit: a9f72ba1a8e Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.3 Host OSVERSION: 1500061 Jail OSVERSION: 1500063 Job Id: 01 !!! Jail is newer than host. (Jail: 1500063, Host: 1500061) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500063 UNAME_v=FreeBSD 15.0-PRERELEASE 1500063 UNAME_r=15.0-PRERELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.3 MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-armv7-default/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.3 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- wen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- "--with-proj-api=yes" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-sf/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-sf/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-sf/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work/.cache HOME=/wrkdirs/usr/ports/math/R-cran-sf/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-sf/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/R-cran-sf/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/ bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/sf OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/sf" EXAMPLESDIR="share/examples/sf" DATADIR="share/sf" WWWDIR="www/sf" ETCDIR="etc/sf" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sf DOCSDIR=/usr/local/share/doc/sf EXAMPLESDIR=/usr/local/share/examples/sf WWWDIR=/usr/local/www/sf ETCDIR=/usr/local/etc/sf --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-sf-1.0.21_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.2.2.pkg [main-armv7-default-job-01] Installing pkg-2.2.2... [main-armv7-default-job-01] Extracting pkg-2.2.2: .......... done ===> R-cran-sf-1.0.21_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-sf-1.0.21_1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-1.0.21_1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-1.0.21_1 for building => SHA256 Checksum OK for sf_1.0-21.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-1.0.21_1 for building ===> Extracting for R-cran-sf-1.0.21_1 => SHA256 Checksum OK for sf_1.0-21.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for R-cran-sf-1.0.21_1 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-sf-1.0.21_1 depends on package: R-cran-classInt>=0.4.1 - not found ===> Installing existing package /packages/All/R-cran-classInt-0.4.11.pkg [main-armv7-default-job-01] Installing R-cran-classInt-0.4.11... [main-armv7-default-job-01] `-- Installing R-4.5.1... [main-armv7-default-job-01] | `-- Installing cairo-1.18.2,3... [main-armv7-default-job-01] | | `-- Installing fontconfig-2.15.0_3,1... [main-armv7-default-job-01] | | `-- Installing expat-2.7.1... [main-armv7-default-job-01] | | `-- Extracting expat-2.7.1: .......... done [main-armv7-default-job-01] | | `-- Installing freetype2-2.13.3... <snip> [main-armv7-default-job-01] | | `-- Extracting pinentry-1.3.2: ..... done [main-armv7-default-job-01] | | `-- Extracting gnupg-2.4.7: .......... done [main-armv7-default-job-01] | `-- Extracting gpgme-2.0.0: .......... done [main-armv7-default-job-01] | `-- Installing gpgmepp-2.0.0... [main-armv7-default-job-01] | `-- Extracting gpgmepp-2.0.0: .......... done [main-armv7-default-job-01] | `-- Installing nspr-4.37... [main-armv7-default-job-01] | `-- Extracting nspr-4.37: .......... done [main-armv7-default-job-01] | `-- Installing nss-3.115... [main-armv7-default-job-01] | `-- Extracting nss-3.115: .......... done [main-armv7-default-job-01] `-- Extracting poppler-25.04.0_2: .......... done [main-armv7-default-job-01] `-- Installing postgresql17-client-17.6... [main-armv7-default-job-01] `-- Extracting postgresql17-client-17.6: .......... done [main-armv7-default-job-01] `-- Installing qhull-8.0.2_3,1... [main-armv7-default-job-01] `-- Extracting qhull-8.0.2_3,1: .......... done [main-armv7-default-job-01] `-- Installing sfcgal-2.2.0... [main-armv7-default-job-01] `-- Extracting sfcgal-2.2.0: .......... done [main-armv7-default-job-01] `-- Installing spatialite-5.1.0_4... [main-armv7-default-job-01] | `-- Installing librttopo-1.1.0... [main-armv7-default-job-01] | `-- Extracting librttopo-1.1.0: .......... done [main-armv7-default-job-01] `-- Extracting spatialite-5.1.0_4: .......... done [main-armv7-default-job-01] `-- Installing webp-1.6.0... [main-armv7-default-job-01] `-- Extracting webp-1.6.0: .......... done [main-armv7-default-job-01] `-- Installing xerces-c3-3.3.0... [main-armv7-default-job-01] `-- Extracting xerces-c3-3.3.0: .......... done [main-armv7-default-job-01] Extracting gdal-3.11.3_3: .......... done ===== Message from boost-libs-1.88.0_2: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from postgresql17-client-17.6: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===> R-cran-sf-1.0.21_1 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so) ===> Returning to build of R-cran-sf-1.0.21_1 ===> R-cran-sf-1.0.21_1 depends on shared library: libgeos.so - found (/usr/local/lib/libgeos.so) ===> R-cran-sf-1.0.21_1 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so) =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for R-cran-sf-1.0.21_1 =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =======================<phase: run-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> R-cran-sf-1.0.21_1 depends on package: R-cran-classInt>=0.4.1 - found ===> R-cran-sf-1.0.21_1 depends on package: R-cran-DBI>=0.8 - found ===> R-cran-sf-1.0.21_1 depends on package: R-cran-magrittr>0 - found ===> R-cran-sf-1.0.21_1 depends on package: R-cran-Rcpp>=0.12.18 - found ===> R-cran-sf-1.0.21_1 depends on package: R-cran-s2>=1.1.0 - found ===> R-cran-sf-1.0.21_1 depends on package: R-cran-units>=0.7.0 - found ===> R-cran-sf-1.0.21_1 depends on file: /usr/local/bin/R - found ===> R-cran-sf-1.0.21_1 depends on executable: gfortran13 - found =========================================================================== =======================<phase: stage >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for R-cran-sf-1.0.21_1 ===> Generating temporary packing list * installing *source* package 'sf' ... ** this is package 'sf' version '1.0-21' ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: cc configure: CXX: c++ -std=gnu++17 checking for gdal-config... /usr/local/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.11.3 checking GDAL version >= 2.0.1... yes checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether cc accepts -g... yes checking for cc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/local/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available for running:... yes configure: GDAL: 3.11.3 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 9.6.0 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for geos-config... /usr/local/bin/geos-config checking geos-config usability... yes configure: GEOS: 3.13.1 checking GEOS version >= 3.4.0... yes checking for geos_c.h... yes checking geos: linking with -L/usr/local/lib -lgeos_c... yes configure: Package CPP flags: -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include configure: Package LIBS: -L/usr/local/lib -lproj -L/usr/local/lib -lgdal -L/usr/local/lib -lgeos_c configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: 'FreeBSD clang version 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd708029e0b2)' c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c RcppExports.cpp -o RcppExports.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c bbox.cpp -o bbox.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal.cpp -o gdal.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_geom.cpp -o gdal_geom.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_read.cpp -o gdal_read.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_read_stream.cpp -o gdal_read_stream.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_utils.cpp -o gdal_utils.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c gdal_write.cpp -o gdal_write.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c geos.cpp -o geos.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c hex.cpp -o hex.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c mdim.cpp -o mdim.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c ops.cpp -o ops.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c polygonize.cpp -o polygonize.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj.cpp -o proj.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c proj_info.cpp -o proj_info.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c raster2sf.cpp -o raster2sf.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c sfc-sfg.cpp -o sfc-sfg.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c signed_area.cpp -o signed_area.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c stars.cpp -o stars.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c wkb.cpp -o wkb.o c++ -std=gnu++17 -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include -DHAVE_PROJ_H -I/usr/local/include -I/usr/local/include -I'/usr/local/lib/R/library/Rcpp/include' -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c zm_range.cpp -o zm_range.o c++ -std=gnu++17 -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -L/usr/local/lib -o sf.so RcppExports.o bbox.o gdal.o gdal_geom.o gdal_read.o gdal_read_stream.o gdal_utils.o gdal_write.o geos.o hex.o mdim.o ops.o polygonize.o proj.o proj_info.o raster2sf.o sfc-sfg.o signed_area.o stars.o wkb.o zm_range.o -L/usr/local/lib -lproj -L/usr/local/lib -lgdal -L/usr/local/lib -lgeos_c -L/usr/local/lib/R/lib -lR installing to /wrkdirs/usr/ports/math/R-cran-sf/work/stage/usr/local/lib/R/library/00LOCK-sf/00new/sf/libs ** R ** demo ** inst ** tests ** byte-compile and prepare package for lazy loading in method for 'dbWriteTable' with signature '"PostgreSQLConnection","character","sf"': no definition for class "PostgreSQLConnection" in method for 'dbDataType' with signature '"PostgreSQLConnection","sf"': no definition for class "PostgreSQLConnection" in method for 'coerce' with signature '"Spatial","sf"': no definition for class "Spatial" in method for 'coerce' with signature '"Spatial","sfc"': no definition for class "Spatial" in method for 'coerce' with signature '"sf","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"sfc","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"XY","Spatial"': no definition for class "Spatial" in method for 'coerce' with signature '"crs","CRS"': no definition for class "CRS" in method for 'coerce' with signature '"sgbp","sparseMatrix"': no definition for class "sparseMatrix" ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'sf' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/wrkdirs/usr/ports/math/R-cran-sf/work/stage/usr/local/lib/R/library/00LOCK-sf/00new/sf/libs/sf.so': /usr/local/lib/libgdal.so.37: Undefined symbol "__aeabi_d2h@GCC_3.5" Error: loading failed Execution halted ERROR: loading failed * removing '/wrkdirs/usr/ports/math/R-cran-sf/work/stage/usr/local/lib/R/library/sf' *** Error code 1 Stop. make: stopped making "stage" in /usr/ports/math/R-cran-sf