[package - 135amd64-default][science/pcmsolver] Failed for pcmsolver-1.3.0_1 in build
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Date: Mon, 01 Sep 2025 00:41:20 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/135amd64-default/3f6341e38a73/logs/pcmsolver-1.3.0_1.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=135amd64-default&build=3f6341e38a73
Log:
=>> Building science/pcmsolver
build started at Mon Sep 1 00:38:57 UTC 2025
port directory: /usr/ports/science/pcmsolver
package name: pcmsolver-1.3.0_1
building for: FreeBSD 135amd64-default-job-03 13.5-RELEASE-p3 FreeBSD 13.5-RELEASE-p3 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1124 Nov 5 2024 /usr/ports/science/pcmsolver/Makefile
Ports top last git commit: 3f6341e38a7
Ports top unclean checkout: no
Port dir last git commit: d2f48d88a33
Port dir unclean checkout: no
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Job Id: 03
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#### ####
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> pcmsolver-1.3.0_1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.2.2.pkg
[135amd64-default-job-03] Installing pkg-2.2.2...
[135amd64-default-job-03] Extracting pkg-2.2.2: .......... done
===> pcmsolver-1.3.0_1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of pcmsolver-1.3.0_1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.3.0_1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.3.0_1 for building
=> SHA256 Checksum OK for PCMSolver-pcmsolver-v1.3.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by pcmsolver-1.3.0_1 for building
===> Extracting for pcmsolver-1.3.0_1
=> SHA256 Checksum OK for PCMSolver-pcmsolver-v1.3.0_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for pcmsolver-1.3.0_1
===> Applying FreeBSD patches for pcmsolver-1.3.0_1 from /usr/ports/science/pcmsolver/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.7.pkg
[135amd64-default-job-03] Installing cmake-core-3.31.7...
[135amd64-default-job-03] `-- Installing expat-2.7.1...
[135amd64-default-job-03] `-- Extracting expat-2.7.1: .......... done
[135amd64-default-job-03] `-- Installing jsoncpp-1.9.6_1...
[135amd64-default-job-03] `-- Extracting jsoncpp-1.9.6_1: .......... done
[135amd64-default-job-03] `-- Installing libidn2-2.3.8...
[135amd64-default-job-03] | `-- Installing indexinfo-0.3.1_1...
[135amd64-default-job-03] | `-- Extracting indexinfo-0.3.1_1: .... done
[135amd64-default-job-03] | `-- Installing libunistring-1.3...
[135amd64-default-job-03] | `-- Extracting libunistring-1.3: .......... done
[135amd64-default-job-03] `-- Extracting libidn2-2.3.8: .......... done
[135amd64-default-job-03] `-- Installing libuv-1.51.0...
[135amd64-default-job-03] `-- Extracting libuv-1.51.0: .......... done
[135amd64-default-job-03] `-- Installing rhash-1.4.4_1...
[135amd64-default-job-03] | `-- Installing gettext-runtime-0.23.1...
[135amd64-default-job-03] | `-- Extracting gettext-runtime-0.23.1: .......... done
[135amd64-default-job-03] `-- Extracting rhash-1.4.4_1: .......... done
[135amd64-default-job-03] Extracting cmake-core-3.31.7: .......... done
===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of pcmsolver-1.3.0_1
===> pcmsolver-1.3.0_1 depends on executable: gfortran13 - not found
===> Installing existing package /packages/All/gcc13-13.3.0_3.pkg
[135amd64-default-job-03] Installing gcc13-13.3.0_3...
[135amd64-default-job-03] `-- Installing binutils-2.44,1...
[135amd64-default-job-03] | `-- Installing zstd-1.5.7...
[135amd64-default-job-03] | | `-- Installing liblz4-1.10.0,1...
[135amd64-default-job-03] | | `-- Extracting liblz4-1.10.0,1: .......... done
[135amd64-default-job-03] | `-- Extracting zstd-1.5.7: .......... done
[135amd64-default-job-03] `-- Extracting binutils-2.44,1: .......... done
[135amd64-default-job-03] `-- Installing gmp-6.3.0...
[135amd64-default-job-03] `-- Extracting gmp-6.3.0: .......... done
[135amd64-default-job-03] `-- Installing mpc-1.3.1_1...
[135amd64-default-job-03] | `-- Installing mpfr-4.2.2,1...
[135amd64-default-job-03] | `-- Extracting mpfr-4.2.2,1: .......... done
[135amd64-default-job-03] `-- Extracting mpc-1.3.1_1: ......... done
[135amd64-default-job-03] Extracting gcc13-13.3.0_3: .......... done
=====
Message from gcc13-13.3.0_3:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> pcmsolver-1.3.0_1 depends on executable: gfortran13 - found
===> Returning to build of pcmsolver-1.3.0_1
===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/python3.11 - not found
===> Installing existing package /packages/All/python311-3.11.13_1.pkg
[135amd64-default-job-03] Installing python311-3.11.13_1...
[135amd64-default-job-03] `-- Installing libffi-3.5.1...
[135amd64-default-job-03] `-- Extracting libffi-3.5.1: .......... done
[135amd64-default-job-03] `-- Installing mpdecimal-4.0.1...
[135amd64-default-job-03] `-- Extracting mpdecimal-4.0.1: .......... done
[135amd64-default-job-03] `-- Installing readline-8.2.13_2...
[135amd64-default-job-03] `-- Extracting readline-8.2.13_2: .......... done
[135amd64-default-job-03] Extracting python311-3.11.13_1: .......... done
=====
Message from python311-3.11.13_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/python3.11 - found
===> Returning to build of pcmsolver-1.3.0_1
===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for pcmsolver-1.3.0_1
CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- The CXX compiler identification is Clang 19.1.7
-- The C compiler identification is Clang 19.1.7
-- The Fortran compiler identification is GNU 13.3.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Check for working Fortran compiler: /usr/local/bin/gfortran13 - skipped
-- FCFLAGS is set to '-Wl,-rpath=/usr/local/lib/gcc13'.
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- Verifying Fortran/CXX Compiler Compatibility
-- Verifying Fortran/CXX Compiler Compatibility - Success
-- Setting (unspecified) option ENABLE_GPERFTOOLS: OFF
CMake Warning (dev) at cmake/downloaded/autocmake_python_interpreter.cmake:39 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:69 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /usr/local/bin/python3.11 (found version "3.11.13")
-- Setting (unspecified) option PYMOD_INSTALL_LIBDIR: python
CMake Warning (dev) at cmake/downloaded/autocmake_boost.cmake:107 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:72 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Could NOT find Boost (missing: Boost_INCLUDE_DIR) (Required is at least version "1.54.0")
-- No libraries required, installing headers
-- Eigen 3.3.2 is located here: /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/external/eigen3/include/eigen3
-- Found ZLIB: /usr/lib/libz.so (found version "1.3.1")
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done (3.3s)
-- Generating done (0.0s)
-- Build files have been written to: /wrkdirs/usr/ports/science/pcmsolver/work/.build
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for pcmsolver-1.3.0_1
[ 2%] Unpacking Boost
[ 2%] Built target generate-config-hpp
[ 4%] Generating version info
Blindly (no git) accepting release version: 1.3.0+zzzzzz (recorded)
1.3.0 {} zzzzzz 1.3.0.0 release 1.3.0 <-- 1.3.0+zzzzzz
[ 4%] Built target update_version
[ 6%] Generating user-config.jam
[ 8%] Installing Boost headers
[ 10%] Clean-up Boost
[ 10%] Built target custom_boost
[ 16%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/metal/metal_sphere.F90.o
[ 16%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_precision.f90.o
[ 16%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Collocation.cpp.o
[ 18%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/IBoundaryIntegralOperator.cpp.o
[ 20%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Numerical.cpp.o
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/src/bi_operators/Numerical.cpp:24:
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/src/bi_operators/Numerical.hpp:30:
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/external/eigen3/include/eigen3/Eigen/Core:463:
[1m/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/external/eigen3/include/eigen3/Eigen/src/Core/Transpositions.h:387:87: [0m[0;1;31merror: [0m[1mno member named 'derived' in 'Transpose<TranspositionsBase<type-parameter-0-0>>'[0m
387 | [0;34mreturn[0m Product<OtherDerived, Transpose, AliasFreeProduct>(matrix.derived(), trt.derived());[0m
| [0;1;32m ~~~ ^
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/src/bi_operators/Collocation.cpp:24:
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/src/bi_operators/Collocation.hpp:30:
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/external/eigen3/include/eigen3/Eigen/Core:463:
[1m/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/external/eigen3/include/eigen3/Eigen/src/Core/Transpositions.h:387:87: [0m[0;1;31merror: [0m[1mno member named 'derived' in 'Transpose<TranspositionsBase<type-parameter-0-0>>'[0m
387 | [0;34mreturn[0m Product<OtherDerived, Transpose, AliasFreeProduct>(matrix.derived(), trt.derived());[0m
| [0;1;32m ~~~ ^
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/src/bi_operators/IBoundaryIntegralOperator.cpp:24:
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/src/bi_operators/IBoundaryIntegralOperator.hpp:30:
In file included from /wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/external/eigen3/include/eigen3/Eigen/Core:463:
[1m/wrkdirs/usr/ports/science/pcmsolver/work/pcmsolver-1.3.0/external/eigen3/include/eigen3/Eigen/src/Core/Transpositions.h:387:87: [0m[0;1;31merror: [0m[1mno member named 'derived' in 'Transpose<TranspositionsBase<type-parameter-0-0>>'[0m
387 | [0;34mreturn[0m Product<OtherDerived, Transpose, AliasFreeProduct>(matrix.derived(), trt.derived());[0m
| [0;1;32m ~~~ ^
[0m1 error generated.
--- src/CMakeFiles/pcm-objlib.dir/bi_operators/Collocation.cpp.o ---
*** [src/CMakeFiles/pcm-objlib.dir/bi_operators/Collocation.cpp.o] Error code 1
make[2]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
[0m1 error generated.
--- src/CMakeFiles/pcm-objlib.dir/bi_operators/Numerical.cpp.o ---
*** [src/CMakeFiles/pcm-objlib.dir/bi_operators/Numerical.cpp.o] Error code 1
make[2]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
[0m1 error generated.
--- src/CMakeFiles/pcm-objlib.dir/bi_operators/IBoundaryIntegralOperator.cpp.o ---
*** [src/CMakeFiles/pcm-objlib.dir/bi_operators/IBoundaryIntegralOperator.cpp.o] Error code 1
make[2]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
3 errors
make[2]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
--- src/CMakeFiles/pcm-objlib.dir/all ---
*** [src/CMakeFiles/pcm-objlib.dir/all] Error code 2
make[1]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
1 error
make[1]: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
*** [all] Error code 2
make: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
1 error
make: stopped in /wrkdirs/usr/ports/science/pcmsolver/work/.build
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/science/pcmsolver