[package - 143i386-quarterly][biology/seqwish] Failed for seqwish-0.7.11_2 in build
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Date: Tue, 28 Oct 2025 01:54:52 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy19/data/143i386-quarterly/7b23d1aafd6e/logs/seqwish-0.7.11_2.log
Build URL: https://pkg-status.freebsd.org/beefy19/build.html?mastername=143i386-quarterly&build=7b23d1aafd6e
Log:
=>> Building biology/seqwish
build started at Tue Oct 28 01:54:38 -00 2025
port directory: /usr/ports/biology/seqwish
package name: seqwish-0.7.11_2
building for: FreeBSD 143i386-quarterly-job-12 14.3-RELEASE-p5 FreeBSD 14.3-RELEASE-p5 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 856 Oct 19 01:01 /usr/ports/biology/seqwish/Makefile
Ports top last git commit: 7b23d1aaf
Ports top unclean checkout: no
Port dir last git commit: b98d62d5e
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.4
Host OSVERSION: 1600000
Jail OSVERSION: 1403000
Job Id: 12
---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1403000
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=14.3-RELEASE-p5
LOCALBASE=/usr/local
UNAME_v=FreeBSD 14.3-RELEASE-p5
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.4
MASTERMNT=/usr/local/poudriere/data/.m/143i386-quarterly/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/143i386-quarterly/12/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=143i386-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/143i386-quarterly/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.4
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
===> The following configuration options are available for seqwish-0.7.11_2:
OPENMP=on: Parallel processing support via OpenMP
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN=
"install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
CMAKE_BUILD_TYPE="release" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> seqwish-0.7.11_2 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.3.1_1.pkg
[143i386-quarterly-job-12] Installing pkg-2.3.1_1...
[143i386-quarterly-job-12] Extracting pkg-2.3.1_1: .......... done
===> seqwish-0.7.11_2 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of seqwish-0.7.11_2
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.11_2 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.11_2 for building
=> SHA256 Checksum OK for seqwish-v0.7.11.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by seqwish-0.7.11_2 for building
===> Extracting for seqwish-0.7.11_2
=> SHA256 Checksum OK for seqwish-v0.7.11.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for seqwish-0.7.11_2
===> Applying FreeBSD patches for seqwish-0.7.11_2 from /usr/ports/biology/seqwish/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> seqwish-0.7.11_2 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.9.pkg
[143i386-quarterly-job-12] Installing cmake-core-3.31.9...
[143i386-quarterly-job-12] `-- Installing expat-2.7.3...
[143i386-quarterly-job-12] `-- Extracting expat-2.7.3: .......... done
[143i386-quarterly-job-12] `-- Installing jsoncpp-1.9.6_1...
[143i386-quarterly-job-12] `-- Extracting jsoncpp-1.9.6_1: .......... done
[143i386-quarterly-job-12] `-- Installing libidn2-2.3.8...
[143i386-quarterly-job-12] | `-- Installing indexinfo-0.3.1_1...
[143i386-quarterly-job-12] | `-- Extracting indexinfo-0.3.1_1: .... done
[143i386-quarterly-job-12] | `-- Installing libunistring-1.4.1...
[143i386-quarterly-job-12] | `-- Extracting libunistring-1.4.1: .......... done
[143i386-quarterly-job-12] `-- Extracting libidn2-2.3.8: .......... done
[143i386-quarterly-job-12] `-- Installing libuv-1.51.0...
[143i386-quarterly-job-12] `-- Extracting libuv-1.51.0: .......... done
[143i386-quarterly-job-12] `-- Installing rhash-1.4.4_1...
[143i386-quarterly-job-12] | `-- Installing gettext-runtime-0.23.1...
<snip>
1146 | 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu,
| ^~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1146:73: error: constant expression evaluates to 6743036717 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1146 | 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu,
| ^~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1146:73: note: insert an explicit cast to silence this issue
1146 | 2675975881llu, 3371518343llu, 4247846927llu, 5351951779llu, 6743036717llu,
| ^~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1147:13: error: constant expression evaluates to 8495693897 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1147 | 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu,
| ^~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1147:13: note: insert an explicit cast to silence this issue
1147 | 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu,
| ^~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1147:28: error: constant expression evaluates to 10703903591 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1147 | 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1147:28: note: insert an explicit cast to silence this issue
1147 | 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1147:44: error: constant expression evaluates to 13486073473 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1147 | 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1147:44: note: insert an explicit cast to silence this issue
1147 | 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1147:60: error: constant expression evaluates to 16991387857 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1147 | 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1147:60: note: insert an explicit cast to silence this issue
1147 | 8495693897llu, 10703903591llu, 13486073473llu, 16991387857llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1148:13: error: constant expression evaluates to 21407807219 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1148 | 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1148:13: note: insert an explicit cast to silence this issue
1148 | 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1148:29: error: constant expression evaluates to 26972146961 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1148 | 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1148:29: note: insert an explicit cast to silence this issue
1148 | 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1148:45: error: constant expression evaluates to 33982775741 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1148 | 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1148:45: note: insert an explicit cast to silence this issue
1148 | 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1148:61: error: constant expression evaluates to 42815614441 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1148 | 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1148:61: note: insert an explicit cast to silence this issue
1148 | 21407807219llu, 26972146961llu, 33982775741llu, 42815614441llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1149:13: error: constant expression evaluates to 53944293929 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1149 | 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1149:13: note: insert an explicit cast to silence this issue
1149 | 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1149:29: error: constant expression evaluates to 67965551447 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1149 | 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1149:29: note: insert an explicit cast to silence this issue
1149 | 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1149:45: error: constant expression evaluates to 85631228929 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1149 | 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu,
| ^~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1149:45: note: insert an explicit cast to silence this issue
1149 | 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu,
| ^~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1149:61: error: constant expression evaluates to 107888587883 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1149 | 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu,
| ^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1149:61: note: insert an explicit cast to silence this issue
1149 | 53944293929llu, 67965551447llu, 85631228929llu, 107888587883llu,
| ^~~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1150:13: error: constant expression evaluates to 135931102921 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1150 | 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu,
| ^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1150:13: note: insert an explicit cast to silence this issue
1150 | 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu,
| ^~~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1150:30: error: constant expression evaluates to 171262457903 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1150 | 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu,
| ^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1150:30: note: insert an explicit cast to silence this issue
1150 | 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu,
| ^~~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1150:47: error: constant expression evaluates to 215777175787 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1150 | 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu,
| ^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1150:47: note: insert an explicit cast to silence this issue
1150 | 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu,
| ^~~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1150:64: error: constant expression evaluates to 271862205833 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1150 | 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu,
| ^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1150:64: note: insert an explicit cast to silence this issue
1150 | 135931102921llu, 171262457903llu, 215777175787llu, 271862205833llu,
| ^~~~~~~~~~~~~~~
| static_cast<size_t>( )
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1151:13: error: constant expression evaluates to 342524915839 which cannot be narrowed to type 'size_t' (aka 'unsigned int') [-Wc++11-narrowing]
1151 | 342524915839llu, 431554351609llu, 543724411781llu, 685049831731llu,
| ^~~~~~~~~~~~~~~
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map/flat_hash_map.hpp:1151:13: note: insert an explicit cast to silence this issue
1151 | 342524915839llu, 431554351609llu, 543724411781llu, 685049831731llu,
| ^~~~~~~~~~~~~~~
| static_cast<size_t>( )
fatal error: too many errors emitted, stopping now [-ferror-limit=]
--- CMakeFiles/seqwish.dir/src/seqindex.cpp.o ---
In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.cpp:1:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11:
In file included from /usr/local/include/sdsl/csa_wt.hpp:24:
In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34:
In file included from /usr/local/include/sdsl/wt_gmr.hpp:27:
In file included from /usr/local/include/sdsl/vectors.hpp:8:
/usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled]
202 | std::numeric_limits<double>::infinity());
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
--- CMakeFiles/seqwish.dir/src/main.cpp.o ---
3 warnings and 20 errors generated.
*** [CMakeFiles/seqwish.dir/src/main.cpp.o] Error code 1
make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build
--- CMakeFiles/seqwish.dir/src/seqindex.cpp.o ---
In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.cpp:1:
In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11:
In file included from /usr/local/include/sdsl/csa_wt.hpp:24:
In file included from /usr/local/include/sdsl/wavelet_trees.hpp:41:
/usr/local/include/sdsl/construct.hpp:124:79: warning: instantiation of variable 'sdsl::key_text_trait<'\b'>::KEY_TEXT' required here, but no definition is available [-Wundefined-var-template]
124 | const char* KEY_TEXT = key_text_trait<t_index::alphabet_category::WIDTH>::KEY_TEXT;
| ^
/usr/local/include/sdsl/construct.hpp:90:5: note: in instantiation of function template specialization 'sdsl::construct<sdsl::csa_wt<>>' requested here
90 | construct(idx, file, config, num_bytes, index_tag);
| ^
/usr/local/include/sdsl/construct.hpp:63:5: note: in instantiation of function template specialization 'sdsl::construct<sdsl::csa_wt<>>' requested here
63 | construct(idx, file, config, num_bytes);
| ^
/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.cpp:91:5: note: in instantiation of function template specialization 'sdsl::construct<sdsl::csa_wt<>>' requested here
91 | construct(seq_name_csa, seqnamefile, 1);
| ^
/usr/local/include/sdsl/config.hpp:51:24: note: forward declaration of template entity is here
51 | static const char* KEY_TEXT;
| ^
/usr/local/include/sdsl/construct.hpp:124:79: note: add an explicit instantiation declaration to suppress this warning if 'sdsl::key_text_trait<'\b'>::KEY_TEXT' is explicitly instantiated in another translation unit
124 | const char* KEY_TEXT = key_text_trait<t_index::alphabet_category::WIDTH>::KEY_TEXT;
| ^
/usr/local/include/sdsl/construct.hpp:125:78: warning: instantiation of variable 'sdsl::key_bwt_trait<'\b'>::KEY_BWT' required here, but no definition is available [-Wundefined-var-template]
125 | const char* KEY_BWT = key_bwt_trait<t_index::alphabet_category::WIDTH>::KEY_BWT;
| ^
/usr/local/include/sdsl/config.hpp:57:24: note: forward declaration of template entity is here
57 | static const char* KEY_BWT;
| ^
/usr/local/include/sdsl/construct.hpp:125:78: note: add an explicit instantiation declaration to suppress this warning if 'sdsl::key_bwt_trait<'\b'>::KEY_BWT' is explicitly instantiated in another translation unit
125 | const char* KEY_BWT = key_bwt_trait<t_index::alphabet_category::WIDTH>::KEY_BWT;
| ^
3 warnings generated.
1 error
make[2]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build
*** [CMakeFiles/seqwish.dir/all] Error code 2
make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build
1 error
make[1]: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build
*** [all] Error code 2
make: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build
1 error
make: stopped in /wrkdirs/usr/ports/biology/seqwish/work/.build
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/seqwish