[package - 143amd64-quarterly][math/mlpack] Failed for mlpack-4.5.1 in build
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Date: Fri, 03 Oct 2025 00:06:57 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy20/data/143amd64-quarterly/e3fa556c9a50/logs/mlpack-4.5.1.log
Build URL: https://pkg-status.freebsd.org/beefy20/build.html?mastername=143amd64-quarterly&build=e3fa556c9a50
Log:
=>> Building math/mlpack
build started at Fri Oct 3 00:06:29 -00 2025
port directory: /usr/ports/math/mlpack
package name: mlpack-4.5.1
building for: FreeBSD 143amd64-quarterly-job-37 14.3-RELEASE-p4 FreeBSD 14.3-RELEASE-p4 amd64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1215 Oct 2 01:01 /usr/ports/math/mlpack/Makefile
Ports top last git commit: e3fa556c9
Ports top unclean checkout: no
Port dir last git commit: e3fa556c9
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.3-4-ga545ef33
Host OSVERSION: 1600000
Jail OSVERSION: 1403000
Job Id: 37
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===> The following configuration options are available for mlpack-4.5.1:
EXECUTABLES=on: Build command-line executables
===> Use 'make config' to modify these settings
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/mlpack/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/mlpack/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/mlpack/work/.cache HOME=/wrkdirs/usr/ports/math/mlpack/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/mlpack/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/mlpack/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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EXECUTABLES="" NO_EXECUTABLES="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mlpack DOCSDIR=/usr/local/share/doc/mlpack EXAMPLESDIR=/usr/local/share/examples/mlpack WWWDIR=/usr/local/www/mlpack ETCDIR=/usr/local/etc/mlpack
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USE_PACKAGE_DEPENDS=yes
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PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
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# failed mirror and then fails rather then trying another. It *does*
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kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> mlpack-4.5.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.3.1.pkg
[143amd64-quarterly-job-37] Installing pkg-2.3.1...
[143amd64-quarterly-job-37] Extracting pkg-2.3.1: .......... done
===> mlpack-4.5.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of mlpack-4.5.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by mlpack-4.5.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by mlpack-4.5.1 for building
=> SHA256 Checksum OK for mlpack-4.5.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by mlpack-4.5.1 for building
===> Extracting for mlpack-4.5.1
=> SHA256 Checksum OK for mlpack-4.5.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for mlpack-4.5.1
===> Applying FreeBSD patches for mlpack-4.5.1 from /usr/ports/math/mlpack/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> mlpack-4.5.1 depends on package: armadillo>0 - not found
===> Installing existing package /packages/All/armadillo-15.0.1.pkg
[143amd64-quarterly-job-37] Installing armadillo-15.0.1...
[143amd64-quarterly-job-37] `-- Installing arpack-ng-3.9.1_4...
[143amd64-quarterly-job-37] | `-- Installing blas-3.12.1...
[143amd64-quarterly-job-37] | | `-- Installing gcc13-13.3.0_3...
[143amd64-quarterly-job-37] | | `-- Installing binutils-2.44,1...
[143amd64-quarterly-job-37] | | | `-- Installing indexinfo-0.3.1_1...
[143amd64-quarterly-job-37] | | | `-- Extracting indexinfo-0.3.1_1: .... done
[143amd64-quarterly-job-37] | | | `-- Installing zstd-1.5.7...
[143amd64-quarterly-job-37] | | | `-- Installing liblz4-1.10.0,1...
[143amd64-quarterly-job-37] | | | `-- Extracting liblz4-1.10.0,1: .......... done
[143amd64-quarterly-job-37] | | | `-- Extracting zstd-1.5.7: .......... done
[143amd64-quarterly-job-37] | | `-- Extracting binutils-2.44,1: .......... done
[143amd64-quarterly-job-37] | | `-- Installing gmp-6.3.0...
[143amd64-quarterly-job-37] | | `-- Extracting gmp-6.3.0: .......... done
[143amd64-quarterly-job-37] | | `-- Installing mpc-1.3.1_1...
[143amd64-quarterly-job-37] | | | `-- Installing mpfr-4.2.2,1...
[143amd64-quarterly-job-37] | | | `-- Extracting mpfr-4.2.2,1: .......... done
[143amd64-quarterly-job-37] | | `-- Extracting mpc-1.3.1_1: ......... done
[143amd64-quarterly-job-37] | | `-- Extracting gcc13-13.3.0_3: .......... done
<snip>
Don't forget to add -pthread to your linker options when
linking your code.
===> mlpack-4.5.1 depends on package: cereal>0 - found
===> Returning to build of mlpack-4.5.1
===> mlpack-4.5.1 depends on package: ensmallen>0 - not found
===> Installing existing package /packages/All/ensmallen-2.22.1.pkg
[143amd64-quarterly-job-37] Installing ensmallen-2.22.1...
[143amd64-quarterly-job-37] Extracting ensmallen-2.22.1: .......... done
===> mlpack-4.5.1 depends on package: ensmallen>0 - found
===> Returning to build of mlpack-4.5.1
===> mlpack-4.5.1 depends on file: /usr/local/include/stb/stb_image.h - not found
===> Installing existing package /packages/All/stb-2.37.20241109.pkg
[143amd64-quarterly-job-37] Installing stb-2.37.20241109...
[143amd64-quarterly-job-37] Extracting stb-2.37.20241109: .......... done
===> mlpack-4.5.1 depends on file: /usr/local/include/stb/stb_image.h - found
===> Returning to build of mlpack-4.5.1
===> mlpack-4.5.1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.9.pkg
[143amd64-quarterly-job-37] Installing cmake-core-3.31.9...
[143amd64-quarterly-job-37] `-- Installing expat-2.7.3...
[143amd64-quarterly-job-37] `-- Extracting expat-2.7.3: .......... done
[143amd64-quarterly-job-37] `-- Installing jsoncpp-1.9.6_1...
[143amd64-quarterly-job-37] `-- Extracting jsoncpp-1.9.6_1: .......... done
[143amd64-quarterly-job-37] `-- Installing libidn2-2.3.8...
[143amd64-quarterly-job-37] | `-- Installing libunistring-1.4...
[143amd64-quarterly-job-37] | `-- Extracting libunistring-1.4: .......... done
[143amd64-quarterly-job-37] `-- Extracting libidn2-2.3.8: .......... done
[143amd64-quarterly-job-37] `-- Installing libuv-1.51.0...
[143amd64-quarterly-job-37] `-- Extracting libuv-1.51.0: .......... done
[143amd64-quarterly-job-37] `-- Installing rhash-1.4.4_1...
[143amd64-quarterly-job-37] | `-- Installing gettext-runtime-0.23.1...
[143amd64-quarterly-job-37] | `-- Extracting gettext-runtime-0.23.1: .......... done
[143amd64-quarterly-job-37] `-- Extracting rhash-1.4.4_1: .......... done
[143amd64-quarterly-job-37] Extracting cmake-core-3.31.9: .......... done
===> mlpack-4.5.1 depends on file: /usr/local/bin/cmake - found
===> Returning to build of mlpack-4.5.1
===> mlpack-4.5.1 depends on executable: ninja - not found
===> Installing existing package /packages/All/ninja-1.13.1,4.pkg
[143amd64-quarterly-job-37] Installing ninja-1.13.1,4...
[143amd64-quarterly-job-37] `-- Installing python311-3.11.13_1...
[143amd64-quarterly-job-37] | `-- Installing libffi-3.5.1...
[143amd64-quarterly-job-37] | `-- Extracting libffi-3.5.1: .......... done
[143amd64-quarterly-job-37] | `-- Installing mpdecimal-4.0.1...
[143amd64-quarterly-job-37] | `-- Extracting mpdecimal-4.0.1: .......... done
[143amd64-quarterly-job-37] `-- Extracting python311-3.11.13_1: .......... done
[143amd64-quarterly-job-37] Extracting ninja-1.13.1,4: ........ done
=====
Message from python311-3.11.13_1:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> mlpack-4.5.1 depends on executable: ninja - found
===> Returning to build of mlpack-4.5.1
===> mlpack-4.5.1 depends on package: pkgconf>=1.3.0_1 - not found
===> Installing existing package /packages/All/pkgconf-2.4.3,1.pkg
[143amd64-quarterly-job-37] Installing pkgconf-2.4.3,1...
[143amd64-quarterly-job-37] Extracting pkgconf-2.4.3,1: .......... done
===> mlpack-4.5.1 depends on package: pkgconf>=1.3.0_1 - found
===> Returning to build of mlpack-4.5.1
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for mlpack-4.5.1
===> Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/mlpack/work/.build
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- The C compiler identification is Clang 19.1.7
-- The CXX compiler identification is Clang 19.1.7
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_CXX_ATOMICS64_WITHOUT_LIB
-- Performing Test HAVE_CXX_ATOMICS64_WITHOUT_LIB - Success
-- Found Armadillo: /usr/local/lib/libarmadillo.so (found suitable version "15.0.1", minimum required is "10.8")
-- Found StbImage: /usr/local/include/stb
-- Check that STB static implementation mode links correctly...
-- Check that STB static implementation mode links correctly... success
-- Found Ensmallen: /usr/local/include (found suitable version "2.22.1", minimum required is "2.10.0")
-- Found cereal: /usr/local/include (found suitable version "1.3.2", minimum required is "1.1.2")
-- Found OpenMP_C: -fopenmp=libomp (found version "5.1")
-- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1")
-- Found OpenMP: TRUE (found version "5.1")
CMake Warning (dev) at CMake/TargetDistclean.cmake:14 (add_custom_command):
Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming
POST_BUILD to preserve backward compatibility.
Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:389 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning at CMakeLists.txt:459 (message):
txt2man not found; man pages will not be generated.
-- Not building Julia bindings.
-- Not building Markdown bindings.
-- Not building Python bindings.
-- Not building Go bindings.
-- Not building R bindings.
-- Found PkgConfig: /usr/local/bin/pkgconf (found version "2.4.3")
-- Configuring done (2.1s)
-- Generating done (0.1s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_COLOR_MAKEFILE
CMAKE_C_FLAGS_RELEASE
CMAKE_MODULE_LINKER_FLAGS
CMAKE_SHARED_LINKER_FLAGS
CMAKE_VERBOSE_MAKEFILE
FETCHCONTENT_FULLY_DISCONNECTED
THREADS_HAVE_PTHREAD_ARG
-- Build files have been written to: /wrkdirs/usr/ports/math/mlpack/work/.build
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for mlpack-4.5.1
[ 1% 1/97] /usr/bin/c++ -DMLPACK_CUSTOM_CONFIG_FILE=mlpack/config-local.hpp -DNDEBUG -I/wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src -I/usr/local/include -I/usr/local/include/stb -I/wrkdirs/usr/ports/math/mlpack/work/.build/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -ftemplate-depth=1000 -Wno-unused-function -pthread -O3 -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++17 -DBINDING_TYPE=BINDING_TYPE_CLI -MD -MT src/mlpack/methods/CMakeFiles/mlpack_approx_kfn.dir/approx_kfn/approx_kfn_main.cpp.o -MF src/mlpack/methods/CMakeFiles/mlpack_approx_kfn.dir/approx_kfn/approx_kfn_main.cpp.o.d -o src/mlpack/methods/CMakeFiles/mlpack_approx_kfn.dir/approx_kfn/approx_kfn_main.cpp.o -c /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/methods/approx_kfn/approx_kfn_main.cpp
FAILED: [code=1] src/mlpack/methods/CMakeFiles/mlpack_approx_kfn.dir/approx_kfn/approx_kfn_main.cpp.o
/usr/bin/c++ -DMLPACK_CUSTOM_CONFIG_FILE=mlpack/config-local.hpp -DNDEBUG -I/wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src -I/usr/local/include -I/usr/local/include/stb -I/wrkdirs/usr/ports/math/mlpack/work/.build/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -ftemplate-depth=1000 -Wno-unused-function -pthread -O3 -fopenmp=libomp -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++17 -DBINDING_TYPE=BINDING_TYPE_CLI -MD -MT src/mlpack/methods/CMakeFiles/mlpack_approx_kfn.dir/approx_kfn/approx_kfn_main.cpp.o -MF src/mlpack/methods/CMakeFiles/mlpack_approx_kfn.dir/approx_kfn/approx_kfn_main.cpp.o.d -o src/mlpack/methods/CMakeFiles/mlpack_approx_kfn.dir/approx_kfn/approx_kfn_main.cpp.o -c /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/methods/approx_kfn/approx_kfn_main.cpp
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/methods/approx_kfn/approx_kfn_main.cpp:12:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core.hpp:35:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/prereqs.hpp:23:
/usr/local/include/cereal/types/tuple.hpp:98:41: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw]
98 | serialize<Height - 1>::template apply( ar, tuple );
| ^
/usr/local/include/cereal/types/tuple.hpp:119:85: error: a template argument list is expected after a name prefixed by the template keyword [-Wmissing-template-arg-list-after-template-kw]
119 | tuple_detail::serialize<std::tuple_size<std::tuple<Types...>>::value>::template apply( ar, tuple );
| ^
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/methods/approx_kfn/approx_kfn_main.cpp:12:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core.hpp:44:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core/util/io.hpp:32:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core/data/save.hpp:24:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core/data/save_image.hpp:24:
/usr/local/include/stb/stb_image_write.h:514:32: warning: missing field 'context' initializer [-Wmissing-field-initializers]
514 | stbi__write_context s = { 0 };
| ^
/usr/local/include/stb/stb_image_write.h:522:32: warning: missing field 'context' initializer [-Wmissing-field-initializers]
522 | stbi__write_context s = { 0 };
| ^
/usr/local/include/stb/stb_image_write.h:613:32: warning: missing field 'context' initializer [-Wmissing-field-initializers]
613 | stbi__write_context s = { 0 };
| ^
/usr/local/include/stb/stb_image_write.h:621:32: warning: missing field 'context' initializer [-Wmissing-field-initializers]
621 | stbi__write_context s = { 0 };
| ^
/usr/local/include/stb/stb_image_write.h:789:32: warning: missing field 'context' initializer [-Wmissing-field-initializers]
789 | stbi__write_context s = { 0 };
| ^
/usr/local/include/stb/stb_image_write.h:796:32: warning: missing field 'context' initializer [-Wmissing-field-initializers]
796 | stbi__write_context s = { 0 };
| ^
/usr/local/include/stb/stb_image_write.h:1609:32: warning: missing field 'context' initializer [-Wmissing-field-initializers]
1609 | stbi__write_context s = { 0 };
| ^
/usr/local/include/stb/stb_image_write.h:1618:32: warning: missing field 'context' initializer [-Wmissing-field-initializers]
1618 | stbi__write_context s = { 0 };
| ^
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/methods/approx_kfn/approx_kfn_main.cpp:12:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core.hpp:56:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core/metrics/metrics.hpp:18:
In file included from /wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core/metrics/bleu.hpp:165:
/wrkdirs/usr/ports/math/mlpack/work/mlpack-4.5.1/src/mlpack/core/metrics/bleu_impl.hpp:193:20: warning: unused parameter 'version' [-Wunused-parameter]
193 | const uint32_t version)
| ^
9 warnings and 2 errors generated.
ninja: build stopped: subcommand failed.
*** Error code 1
Stop.
make: stopped in /usr/ports/math/mlpack