[package - 150releng-arm64-default][biology/gkl] Failed for gkl-0.9.1 in build
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Date: Mon, 17 Nov 2025 12:16:19 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/150releng-arm64-default/4bb2e36e912e/logs/gkl-0.9.1.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=150releng-arm64-default&build=4bb2e36e912e
Log:
=>> Building biology/gkl
build started at Mon Nov 17 12:15:58 -00 2025
port directory: /usr/ports/biology/gkl
package name: gkl-0.9.1
building for: FreeBSD 150releng-arm64-default-job-09 15.0-BETA5 FreeBSD 15.0-BETA5 1500068 arm64
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 464 Sep 27 01:07 /usr/ports/biology/gkl/Makefile
Ports top last git commit: 4bb2e36e912
Ports top unclean checkout: no
Port dir last git commit: 25848df4724
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.4
Host OSVERSION: 1600000
Jail OSVERSION: 1500068
Job Id: 09
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XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gkl/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gkl/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/gkl/work/.cache HOME=/wrkdirs/usr/ports/biology/gkl/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/gkl/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/gkl/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> gkl-0.9.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.4.2_1.pkg
[150releng-arm64-default-job-09] Installing pkg-2.4.2_1...
[150releng-arm64-default-job-09] Extracting pkg-2.4.2_1: .......... done
===> gkl-0.9.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of gkl-0.9.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by gkl-0.9.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by gkl-0.9.1 for building
=> SHA256 Checksum OK for Intel-HLS-GKL-0.9.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License MIT accepted by the user
===> Fetching all distfiles required by gkl-0.9.1 for building
===> Extracting for gkl-0.9.1
=> SHA256 Checksum OK for Intel-HLS-GKL-0.9.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for gkl-0.9.1
===> Applying FreeBSD patches for gkl-0.9.1 from /usr/ports/biology/gkl/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> gkl-0.9.1 depends on executable: gmake - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[150releng-arm64-default-job-09] Installing gmake-4.4.1...
[150releng-arm64-default-job-09] `-- Installing gettext-runtime-0.23.1...
[150releng-arm64-default-job-09] | `-- Installing indexinfo-0.3.1_1...
[150releng-arm64-default-job-09] | `-- Extracting indexinfo-0.3.1_1: .... done
[150releng-arm64-default-job-09] `-- Extracting gettext-runtime-0.23.1: .......... done
[150releng-arm64-default-job-09] Extracting gmake-4.4.1: .......... done
===> gkl-0.9.1 depends on executable: gmake - found
===> Returning to build of gkl-0.9.1
===> gkl-0.9.1 depends on file: /usr/local/bin/cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.9.pkg
[150releng-arm64-default-job-09] Installing cmake-core-3.31.9...
[150releng-arm64-default-job-09] `-- Installing expat-2.7.3...
[150releng-arm64-default-job-09] `-- Extracting expat-2.7.3: .......... done
[150releng-arm64-default-job-09] `-- Installing jsoncpp-1.9.6_1...
[150releng-arm64-default-job-09] `-- Extracting jsoncpp-1.9.6_1: .......... done
[150releng-arm64-default-job-09] `-- Installing libidn2-2.3.8...
<snip>
--- src/main/native/pairhmm/CMakeFiles/gkl_pairhmm_omp.dir/all ---
/usr/lib/clang/19/include/raointintrin.h:105:3: error: use of undeclared identifier '__builtin_ia32_axor32'
105 | __builtin_ia32_axor32((int *)__A, __B);
| ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
--- src/main/native/pairhmm/CMakeFiles/gkl_pairhmm.dir/all ---
In file included from /wrkdirs/usr/ports/biology/gkl/work/GKL-0.9.1/src/main/native/pairhmm/IntelPairHmm.cc:33:
In file included from /wrkdirs/usr/ports/biology/gkl/work/GKL-0.9.1/src/main/native/pairhmm/../common/avx.h:32:
In file included from /usr/lib/clang/19/include/x86intrin.h:15:
In file included from /usr/lib/clang/19/include/immintrin.h:17:
In file included from /usr/lib/clang/19/include/x86gprintrin.h:26:
/usr/lib/clang/19/include/crc32intrin.h:73:10: error: use of undeclared identifier '__builtin_ia32_crc32si'
73 | return __builtin_ia32_crc32si(__C, __D);
| ^
In file included from /wrkdirs/usr/ports/biology/gkl/work/GKL-0.9.1/src/main/native/pairhmm/IntelPairHmm.cc:33:
In file included from /wrkdirs/usr/ports/biology/gkl/work/GKL-0.9.1/src/main/native/pairhmm/../common/avx.h:32:
In file included from /usr/lib/clang/19/include/x86intrin.h:15:
In file included from /usr/lib/clang/19/include/immintrin.h:17:
In file included from /usr/lib/clang/19/include/x86gprintrin.h:34:
/usr/lib/clang/19/include/raointintrin.h:39:3: error: use of undeclared identifier '__builtin_ia32_aadd32'; did you mean '__builtin_arm_addg'?
39 | __builtin_ia32_aadd32((int *)__A, __B);
| ^
/usr/lib/clang/19/include/raointintrin.h:39:3: error: argument to '__builtin_arm_addg' must be a constant integer
39 | __builtin_ia32_aadd32((int *)__A, __B);
| ^ ~~~
/usr/lib/clang/19/include/raointintrin.h:61:3: error: use of undeclared identifier '__builtin_ia32_aand32'
61 | __builtin_ia32_aand32((int *)__A, __B);
| ^
/usr/lib/clang/19/include/raointintrin.h:83:3: error: use of undeclared identifier '__builtin_ia32_aor32'
83 | __builtin_ia32_aor32((int *)__A, __B);
| ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
--- src/main/native/compression/CMakeFiles/otc_zlibExternal.dir/all ---
11 warnings generated.
--- minigzip64.o ---
cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -I/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/ -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o /wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/minigzip.c
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/minigzip.c:351:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
351 | void error(msg)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/minigzip.c:362:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
362 | void gz_compress(in, out)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/minigzip.c:430:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
430 | void gz_uncompress(in, out)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/minigzip.c:457:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
457 | void file_compress(file, mode)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/minigzip.c:496:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
496 | void file_uncompress(file)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/minigzip.c:556:5: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
556 | int main(argc, argv)
| ^
6 warnings generated.
--- example.o ---
cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -I/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/ -c -o example.o /wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:88:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
88 | void test_compress(compr, comprLen, uncompr, uncomprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:114:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
114 | void test_gzio(fname, uncompr, uncomprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:200:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
200 | void test_deflate(compr, comprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:238:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
238 | void test_inflate(compr, comprLen, uncompr, uncomprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:279:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
279 | void test_large_deflate(compr, comprLen, uncompr, uncomprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:334:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
334 | void test_large_inflate(compr, comprLen, uncompr, uncomprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:375:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
375 | void test_flush(compr, comprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:413:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
413 | void test_sync(compr, comprLen, uncompr, uncomprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:456:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
456 | void test_dict_deflate(compr, comprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:493:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
493 | void test_dict_inflate(compr, comprLen, uncompr, uncomprLen)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/test/example.c:544:5: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
544 | int main(argc, argv)
| ^
11 warnings generated.
--- adler32.o ---
cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o adler32.o /wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/adler32.c
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/adler32.c:63:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
63 | uLong ZEXPORT adler32_z(adler, buf, len)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/adler32.c:150:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
150 | uLong ZEXPORT adler32(adler, buf, len)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/adler32.c:159:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
159 | local uLong adler32_combine_(adler1, adler2, len2)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/adler32.c:188:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
188 | uLong ZEXPORT adler32_combine(adler1, adler2, len2)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/adler32.c:196:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
196 | uLong ZEXPORT adler32_combine64(adler1, adler2, len2)
| ^
5 warnings generated.
--- crc32.o ---
cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -fPIC -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -include zconf.h -c -o crc32.o /wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c
--- src/main/native/pairhmm/CMakeFiles/gkl_pairhmm.dir/all ---
1 warning and 20 errors generated.
--- src/main/native/pairhmm/CMakeFiles/gkl_pairhmm_omp.dir/all ---
1 warning and 20 errors generated.
--- src/main/native/pairhmm/CMakeFiles/gkl_pairhmm.dir/all ---
*** [src/main/native/pairhmm/CMakeFiles/gkl_pairhmm.dir/IntelPairHmm.cc.o] Error code 1
make[2]: stopped making "src/main/native/pairhmm/CMakeFiles/gkl_pairhmm.dir/build" in /wrkdirs/usr/ports/biology/gkl/work/.build
make[2]: 1 error
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--- src/main/native/pairhmm/CMakeFiles/gkl_pairhmm_omp.dir/all ---
*** [src/main/native/pairhmm/CMakeFiles/gkl_pairhmm_omp.dir/IntelPairHmm.cc.o] Error code 1
make[2]: stopped making "src/main/native/pairhmm/CMakeFiles/gkl_pairhmm_omp.dir/build" in /wrkdirs/usr/ports/biology/gkl/work/.build
make[2]: 1 error
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--- src/main/native/pairhmm/CMakeFiles/gkl_pairhmm.dir/all ---
*** [src/main/native/pairhmm/CMakeFiles/gkl_pairhmm.dir/all] Error code 2
make[1]: stopped making "all" in /wrkdirs/usr/ports/biology/gkl/work/.build
--- src/main/native/pairhmm/CMakeFiles/gkl_pairhmm_omp.dir/all ---
*** [src/main/native/pairhmm/CMakeFiles/gkl_pairhmm_omp.dir/all] Error code 2
make[1]: stopped making "all" in /wrkdirs/usr/ports/biology/gkl/work/.build
--- src/main/native/compression/CMakeFiles/otc_zlibExternal.dir/all ---
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:126:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
126 | local z_word_t byte_swap(word)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:551:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
551 | local z_crc_t multmodp(a, b)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:575:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
575 | local z_crc_t x2nmodp(n, k)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:726:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
726 | local z_crc_t crc_word(data)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:735:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
735 | local z_word_t crc_word_big(data)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:748:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
748 | unsigned long ZEXPORT crc32_z(crc, buf, len)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:1072:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
1072 | unsigned long ZEXPORT crc32(crc, buf, len)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:1081:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
1081 | uLong ZEXPORT crc32_combine64(crc1, crc2, len2)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:1093:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
1093 | uLong ZEXPORT crc32_combine(crc1, crc2, len2)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:1102:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
1102 | uLong ZEXPORT crc32_combine_gen64(len2)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:1112:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
1112 | uLong ZEXPORT crc32_combine_gen(len2)
| ^
/wrkdirs/usr/ports/biology/gkl/work/.build/src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal/crc32.c:1119:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype]
1119 | uLong ZEXPORT crc32_combine_op(crc1, crc2, op)
| ^
12 warnings generated.
*** [src/main/native/compression/otc_zlibExternal-prefix/src/otc_zlibExternal-stamp/otc_zlibExternal-build] Error code 6
make[2]: stopped making "src/main/native/compression/CMakeFiles/otc_zlibExternal.dir/build" in /wrkdirs/usr/ports/biology/gkl/work/.build
make[2]: 1 error
make[2]: stopped making "src/main/native/compression/CMakeFiles/otc_zlibExternal.dir/build" in /wrkdirs/usr/ports/biology/gkl/work/.build
*** [src/main/native/compression/CMakeFiles/otc_zlibExternal.dir/all] Error code 2
make[1]: stopped making "all" in /wrkdirs/usr/ports/biology/gkl/work/.build
make[1]: 3 errors
make[1]: stopped making "all" in /wrkdirs/usr/ports/biology/gkl/work/.build
*** [all] Error code 2
make: stopped making "all" in /wrkdirs/usr/ports/biology/gkl/work/.build
make: 1 error
make: stopped making "all" in /wrkdirs/usr/ports/biology/gkl/work/.build
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/biology/gkl