[package - 134releng-armv7-default][biology/p5-Bio-Phylo] Failed for p5-Bio-Phylo-2.0.1 in configure
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Date: Wed, 28 May 2025 22:39:08 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: perl@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere3/data/134releng-armv7-default/bccdadf9a3a6/logs/p5-Bio-Phylo-2.0.1.log
Build URL: https://pkg-status.freebsd.org/ampere3/build.html?mastername=134releng-armv7-default&build=bccdadf9a3a6
Log:
=>> Building biology/p5-Bio-Phylo
build started at Wed May 28 22:30:31 UTC 2025
port directory: /usr/ports/biology/p5-Bio-Phylo
package name: p5-Bio-Phylo-2.0.1
building for: FreeBSD 134releng-armv7-default-job-05 13.4-RELEASE-p5 FreeBSD 13.4-RELEASE-p5 1304000 arm
maintained by: perl@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1125 Sep 11 2022 /usr/ports/biology/p5-Bio-Phylo/Makefile
Ports top last git commit: bccdadf9a3a
Ports top unclean checkout: no
Port dir last git commit: fb16dfecae4
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2-12-g74a54a88
Host OSVERSION: 1500035
Jail OSVERSION: 1304000
Job Id: 05
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--MAINTAINER--
perl@FreeBSD.org
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INSTALLDIRS="site" CC="cc" CCFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " LD="cc" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib"
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--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work/.cache HOME=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES"
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PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work/.cache HOME=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/p5-Bio-Phylo/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="ins
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--End MAKE_ENV--
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OSREL=13.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.40.2 PERL_VER=5.40 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.40 DOCSDIR="share/doc/Bio-Phylo" EXAMPLESDIR="share/examples/Bio-Phylo" DATADIR="share/Bio-Phylo" WWWDIR="www/Bio-Phylo" ETCDIR="etc/Bio-Phylo"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Bio-Phylo DOCSDIR=/usr/local/share/doc/Bio-Phylo EXAMPLESDIR=/usr/local/share/examples/Bio-Phylo WWWDIR=/usr/local/www/Bio-Phylo ETCDIR=/usr/local/etc/Bio-Phylo
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
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WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
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cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License ART10 GPLv1+ accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> p5-Bio-Phylo-2.0.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.1.2.pkg
[134releng-armv7-default-job-05] Installing pkg-2.1.2...
[134releng-armv7-default-job-05] Extracting pkg-2.1.2: .......... done
===> p5-Bio-Phylo-2.0.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of p5-Bio-Phylo-2.0.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License ART10 GPLv1+ accepted by the user
===> Fetching all distfiles required by p5-Bio-Phylo-2.0.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License ART10 GPLv1+ accepted by the user
===> Fetching all distfiles required by p5-Bio-Phylo-2.0.1 for building
=> SHA256 Checksum OK for Bio-Phylo-v2.0.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License ART10 GPLv1+ accepted by the user
===> Fetching all distfiles required by p5-Bio-Phylo-2.0.1 for building
===> Extracting for p5-Bio-Phylo-2.0.1
=> SHA256 Checksum OK for Bio-Phylo-v2.0.1.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for p5-Bio-Phylo-2.0.1
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> p5-Bio-Phylo-2.0.1 depends on package: p5-Archive-Zip>=0 - not found
===> Installing existing package /packages/All/p5-Archive-Zip-1.68.pkg
[134releng-armv7-default-job-05] Installing p5-Archive-Zip-1.68...
[134releng-armv7-default-job-05] `-- Installing perl5-5.40.2...
[134releng-armv7-default-job-05] `-- Extracting perl5-5.40.2: .......... done
[134releng-armv7-default-job-05] Extracting p5-Archive-Zip-1.68: .......... done
===> p5-Bio-Phylo-2.0.1 depends on package: p5-Archive-Zip>=0 - found
===> Returning to build of p5-Bio-Phylo-2.0.1
===> p5-Bio-Phylo-2.0.1 depends on package: p5-BioPerl>=0 - not found
===> Installing existing package /packages/All/p5-BioPerl-1.007008.pkg
[134releng-armv7-default-job-05] Installing p5-BioPerl-1.007008...
[134releng-armv7-default-job-05] `-- Installing p5-Data-Stag-0.14_2...
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<snip>
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[134releng-armv7-default-job-05] | | | `-- Installing p5-Sub-Identify-0.14...
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[134releng-armv7-default-job-05] | | | `-- Installing p5-namespace-clean-0.27...
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[134releng-armv7-default-job-05] | | `-- Extracting p5-DateTime-Locale-1.45: .......... done
[134releng-armv7-default-job-05] | | `-- Installing p5-DateTime-TimeZone-2.65,1...
[134releng-armv7-default-job-05] | | `-- Installing p5-Class-Singleton-1.6...
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[134releng-armv7-default-job-05] | | `-- Installing p5-Params-Validate-1.31...
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[134releng-armv7-default-job-05] `-- Installing p5-Module-Pluggable-5.2...
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[134releng-armv7-default-job-05] `-- Installing p5-RDF-Trine-1.019_1...
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[134releng-armv7-default-job-05] | `-- Installing p5-Cache-LRU-0.04_1...
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[134releng-armv7-default-job-05] | `-- Installing p5-DBD-SQLite-1.76...
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[134releng-armv7-default-job-05] | | `-- Extracting p5-Module-Runtime-Conflicts-0.003_1: ....... done
[134releng-armv7-default-job-05] | | `-- Installing p5-Package-DeprecationManager-0.18...
[134releng-armv7-default-job-05] | | `-- Extracting p5-Package-DeprecationManager-0.18: ...... done
[134releng-armv7-default-job-05] | | `-- Installing p5-Scalar-List-Utils-1.69,1...
[134releng-armv7-default-job-05] | | `-- Extracting p5-Scalar-List-Utils-1.69,1: .......... done
[134releng-armv7-default-job-05] | `-- Extracting p5-Moose-2.2207,1: .......... done
[134releng-armv7-default-job-05] | `-- Installing p5-MooseX-ArrayRef-0.005...
[134releng-armv7-default-job-05] | `-- Extracting p5-MooseX-ArrayRef-0.005: ......... done
[134releng-armv7-default-job-05] | `-- Installing p5-Text-CSV_XS-1.60...
[134releng-armv7-default-job-05] | `-- Extracting p5-Text-CSV_XS-1.60: ........ done
[134releng-armv7-default-job-05] | `-- Installing p5-Text-Table-1.135...
[134releng-armv7-default-job-05] | | `-- Installing p5-Text-Aligner-0.16_1...
[134releng-armv7-default-job-05] | | `-- Extracting p5-Text-Aligner-0.16_1: ...... done
[134releng-armv7-default-job-05] | `-- Extracting p5-Text-Table-1.135: ...... done
[134releng-armv7-default-job-05] | `-- Installing p5-XML-CommonNS-0.06_2...
[134releng-armv7-default-job-05] | | `-- Installing p5-XML-NamespaceFactory-1.02...
[134releng-armv7-default-job-05] | | `-- Extracting p5-XML-NamespaceFactory-1.02: ....... done
[134releng-armv7-default-job-05] | `-- Extracting p5-XML-CommonNS-0.06_2: ....... done
[134releng-armv7-default-job-05] | `-- Installing p5-XML-Namespace-0.02_1...
[134releng-armv7-default-job-05] | `-- Extracting p5-XML-Namespace-0.02_1: ....... done
[134releng-armv7-default-job-05] `-- Extracting p5-RDF-Trine-1.019_1: .......... done
[134releng-armv7-default-job-05] Extracting p5-RDF-Query-2.919: .......... done
=====
Message from p5-Moose-2.2207,1:
--
Note that this release of p5-Moose is incompatible with
older versions of the following modules:
Catalyst <= 5.80017
Devel::REPL <= 1.003008
Fey::ORM <= 0.23
File::ChangeNotify <= 0.15
KiokuDB <= 0.41
MooseX::Aliases <= 0.07
MooseX::AttributeHelpers <= 0.22
MooseX::AttributeInflate <= 0.02
MooseX::Attribute::Prototype <= 0.10
MooseX::ClassAttribute <= 0.13
MooseX::FollowPBP <= 0.02
MooseX::HasDefaults <= 0.02
MooseX::InstanceTracking <= 0.04
MooseX::LazyRequire <= 0.05
MooseX::MethodAttributes <= 0.22
MooseX::NonMoose <= 0.13
MooseX::Params::Validate <= 0.05
MooseX::Role::Cmd <= 0.06
MooseX::Role::WithOverloading <= 0.07
MooseX::SemiAffordanceAccessor <= 0.05
MooseX::Singleton <= 0.22
MooseX::StrictConstructor <= 0.08
MooseX::Types <= 0.19
MooseX::UndefTolerant <= 0.04
namespace::autoclean <= 0.08
Pod::Elemental <= 0.093280
They will need to be updated.
===> p5-Bio-Phylo-2.0.1 depends on package: p5-RDF-Query>=0 - found
===> Returning to build of p5-Bio-Phylo-2.0.1
===> p5-Bio-Phylo-2.0.1 depends on package: p5-RDF-Trine>=0 - found
===> p5-Bio-Phylo-2.0.1 depends on package: p5-SVG>=0 - not found
===> Installing existing package /packages/All/p5-SVG-2.87.pkg
[134releng-armv7-default-job-05] Installing p5-SVG-2.87...
[134releng-armv7-default-job-05] Extracting p5-SVG-2.87: .......... done
===> p5-Bio-Phylo-2.0.1 depends on package: p5-SVG>=0 - found
===> Returning to build of p5-Bio-Phylo-2.0.1
===> p5-Bio-Phylo-2.0.1 depends on package: p5-SWF-Builder>=0 - not found
===> Installing existing package /packages/All/p5-SWF-Builder-0.16_2.pkg
[134releng-armv7-default-job-05] Installing p5-SWF-Builder-0.16_2...
[134releng-armv7-default-job-05] `-- Installing p5-Math-Bezier-Convert-0.02_1...
[134releng-armv7-default-job-05] `-- Extracting p5-Math-Bezier-Convert-0.02_1: ... done
[134releng-armv7-default-job-05] `-- Installing p5-SWF-File-0.42_2,1...
[134releng-armv7-default-job-05] | `-- Installing p5-Data-TemporaryBag-0.09_1...
[134releng-armv7-default-job-05] | `-- Extracting p5-Data-TemporaryBag-0.09_1: ....... done
[134releng-armv7-default-job-05] `-- Extracting p5-SWF-File-0.42_2,1: .......... done
[134releng-armv7-default-job-05] Extracting p5-SWF-Builder-0.16_2: .......... done
===> p5-Bio-Phylo-2.0.1 depends on package: p5-SWF-Builder>=0 - found
===> Returning to build of p5-Bio-Phylo-2.0.1
===> p5-Bio-Phylo-2.0.1 depends on package: p5-XML-LibXML>=0 - found
===> p5-Bio-Phylo-2.0.1 depends on package: p5-XML-Twig>=0 - found
===> p5-Bio-Phylo-2.0.1 depends on package: p5-XML-XML2JSON>=0 - not found
===> Installing existing package /packages/All/p5-XML-XML2JSON-0.06_1.pkg
[134releng-armv7-default-job-05] Installing p5-XML-XML2JSON-0.06_1...
[134releng-armv7-default-job-05] `-- Installing p5-YAML-Syck-1.34_1...
[134releng-armv7-default-job-05] `-- Extracting p5-YAML-Syck-1.34_1: .......... done
[134releng-armv7-default-job-05] Extracting p5-XML-XML2JSON-0.06_1: ....... done
===> p5-Bio-Phylo-2.0.1 depends on package: p5-XML-XML2JSON>=0 - found
===> Returning to build of p5-Bio-Phylo-2.0.1
===> p5-Bio-Phylo-2.0.1 depends on package: p5-libxml>=0 - found
===> p5-Bio-Phylo-2.0.1 depends on package: perl5>=5.40.r<5.41 - found
===> p5-Bio-Phylo-2.0.1 depends on package: perl5>=5.40.r<5.41 - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for p5-Bio-Phylo-2.0.1
*** Signal 11
Stop.
make: stopped in /usr/ports/biology/p5-Bio-Phylo