[package - 134i386-default][science/py-phonopy] Failed for py311-phonopy-2.38.0 in build
- Go to: [ bottom of page ] [ top of archives ] [ this month ]
Date: Thu, 13 Mar 2025 07:03:41 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy15/data/134i386-default/90289c6eaa01/logs/py311-phonopy-2.38.0.log
Build URL: https://pkg-status.freebsd.org/beefy15/build.html?mastername=134i386-default&build=90289c6eaa01
Log:
=>> Building science/py-phonopy
build started at Thu Mar 13 07:02:59 UTC 2025
port directory: /usr/ports/science/py-phonopy
package name: py311-phonopy-2.38.0
building for: FreeBSD 134i386-default-job-13 13.4-RELEASE-p4 FreeBSD 13.4-RELEASE-p4 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1614 Mar 6 01:01 /usr/ports/science/py-phonopy/Makefile
Ports top last git commit: 90289c6ea
Ports top unclean checkout: no
Port dir last git commit: 86693a228
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2-7-gf78625a5
Host OSVERSION: 1500028
Jail OSVERSION: 1304000
Job Id: 13
---Begin Environment---
SHELL=/bin/csh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1304000
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=13.4-RELEASE-p4
LOCALBASE=/usr/local
UNAME_v=FreeBSD 13.4-RELEASE-p4
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2-7-gf78625a5
MASTERMNT=/usr/local/poudriere/data/.m/134i386-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/134i386-default/13/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=134i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/134i386-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.2-7-gf78625a5
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py311
MAKE_ARGS= FLAVOR=py311
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-phonopy/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-phonopy/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-phonopy/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-phonopy/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-phonopy/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-phonopy/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-phonopy/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-phonopy/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-phonopy/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-phonopy/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-phonopy/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-phonopy/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="i
nstall -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/phonopy" EXAMPLESDIR="share/examples/phonopy" DATADIR="share/phonopy" WWWDIR="www/phonopy" ETCDIR="etc/phonopy"
--End PLIST_SUB--
--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_EXT_SUFFIX=.cpython-311 PYTHON_VER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/phonopy DOCSDIR=/usr/local/share/doc/phonopy EXAMPLESDIR=/usr/local/share/examples/phonopy WWWDIR=/usr/local/www/phonopy ETCDIR=/usr/local/etc/phonopy
--End SUB_LIST--
---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-phonopy-2.38.0 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.0.6.pkg
[134i386-default-job-13] Installing pkg-2.0.6...
[134i386-default-job-13] Extracting pkg-2.0.6: .......... done
===> py311-phonopy-2.38.0 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of py311-phonopy-2.38.0
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-phonopy-2.38.0 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-phonopy-2.38.0 for building
=> SHA256 Checksum OK for phonopy-2.38.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py311-phonopy-2.38.0 for building
===> Extracting for py311-phonopy-2.38.0
=> SHA256 Checksum OK for phonopy-2.38.0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for py311-phonopy-2.38.0
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> py311-phonopy-2.38.0 depends on executable: cmake - not found
===> Installing existing package /packages/All/cmake-core-3.31.6.pkg
[134i386-default-job-13] Installing cmake-core-3.31.6...
[134i386-default-job-13] `-- Installing expat-2.6.4...
[134i386-default-job-13] `-- Extracting expat-2.6.4: .......... done
[134i386-default-job-13] `-- Installing jsoncpp-1.9.6_1...
[134i386-default-job-13] `-- Extracting jsoncpp-1.9.6_1: .......... done
[134i386-default-job-13] `-- Installing libidn2-2.3.7...
[134i386-default-job-13] | `-- Installing indexinfo-0.3.1_1...
[134i386-default-job-13] | `-- Extracting indexinfo-0.3.1_1: .... done
[134i386-default-job-13] | `-- Installing libunistring-1.3...
[134i386-default-job-13] | `-- Extracting libunistring-1.3: .......... done
[134i386-default-job-13] `-- Extracting libidn2-2.3.7: .......... done
[134i386-default-job-13] `-- Installing libuv-1.50.0...
[134i386-default-job-13] `-- Extracting libuv-1.50.0: .......... done
[134i386-default-job-13] `-- Installing rhash-1.4.4_1...
[134i386-default-job-13] | `-- Installing gettext-runtime-0.23.1...
[134i386-default-job-13] | `-- Extracting gettext-runtime-0.23.1: .......... done
[134i386-default-job-13] `-- Extracting rhash-1.4.4_1: .......... done
[134i386-default-job-13] Extracting cmake-core-3.31.6: .......... done
===> py311-phonopy-2.38.0 depends on executable: cmake - found
===> Returning to build of py311-phonopy-2.38.0
===> py311-phonopy-2.38.0 depends on package: py311-nanobind>0 - not found
===> Installing existing package /packages/All/py311-nanobind-2.4.0.pkg
[134i386-default-job-13] Installing py311-nanobind-2.4.0...
[134i386-default-job-13] `-- Installing python311-3.11.11...
[134i386-default-job-13] | `-- Installing libffi-3.4.6...
[134i386-default-job-13] | `-- Extracting libffi-3.4.6: .......... done
[134i386-default-job-13] | `-- Installing mpdecimal-4.0.0...
[134i386-default-job-13] | `-- Extracting mpdecimal-4.0.0: .......... done
[134i386-default-job-13] | `-- Installing readline-8.2.13_2...
[134i386-default-job-13] | `-- Extracting readline-8.2.13_2: .......... done
[134i386-default-job-13] `-- Extracting python311-3.11.11: .......... done
[134i386-default-job-13] Extracting py311-nanobind-2.4.0: .......... done
=====
Message from python311-3.11.11:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
py311-gdbm databases/py-gdbm@py311
py311-sqlite3 databases/py-sqlite3@py311
py311-tkinter x11-toolkits/py-tkinter@py311
===> py311-phonopy-2.38.0 depends on package: py311-nanobind>0 - found
===> Returning to build of py311-phonopy-2.38.0
===> py311-phonopy-2.38.0 depends on package: py311-numpy>=1.16,1<1.27,1 - not found
===> Installing existing package /packages/All/py311-numpy-1.26.4_6,1.pkg
[134i386-default-job-13] Installing py311-numpy-1.26.4_6,1...
[134i386-default-job-13] `-- Installing gcc13-13.3.0_2...
[134i386-default-job-13] | `-- Installing binutils-2.44,1...
[134i386-default-job-13] | | `-- Installing zstd-1.5.7...
[134i386-default-job-13] | | `-- Installing liblz4-1.10.0,1...
[134i386-default-job-13] | | `-- Extracting liblz4-1.10.0,1: .......... done
[134i386-default-job-13] | | `-- Extracting zstd-1.5.7: .......... done
[134i386-default-job-13] | `-- Extracting binutils-2.44,1: .......... done
[134i386-default-job-13] | `-- Installing gmp-6.3.0...
[134i386-default-job-13] | `-- Extracting gmp-6.3.0: .......... done
[134i386-default-job-13] | `-- Installing mpc-1.3.1_1...
[134i386-default-job-13] | | `-- Installing mpfr-4.2.1,1...
[134i386-default-job-13] | | `-- Extracting mpfr-4.2.1,1: .......... done
[134i386-default-job-13] | `-- Extracting mpc-1.3.1_1: ......... done
[134i386-default-job-13] `-- Extracting gcc13-13.3.0_2: .......... done
[134i386-default-job-13] `-- Installing openblas-0.3.29_1,2...
[134i386-default-job-13] `-- Extracting openblas-0.3.29_1,2: .......... done
[134i386-default-job-13] `-- Installing suitesparse-umfpack-6.3.5_1...
[134i386-default-job-13] | `-- Installing suitesparse-amd-3.3.3...
[134i386-default-job-13] | | `-- Installing suitesparse-config-7.8.3_1...
[134i386-default-job-13] | | `-- Extracting suitesparse-config-7.8.3_1: .......... done
[134i386-default-job-13] | `-- Extracting suitesparse-amd-3.3.3: .......... done
[134i386-default-job-13] | `-- Installing suitesparse-camd-3.3.3...
[134i386-default-job-13] | `-- Extracting suitesparse-camd-3.3.3: .......... done
[134i386-default-job-13] | `-- Installing suitesparse-ccolamd-3.3.4...
[134i386-default-job-13] | `-- Extracting suitesparse-ccolamd-3.3.4: .......... done
[134i386-default-job-13] | `-- Installing suitesparse-cholmod-5.3.0_1...
[134i386-default-job-13] | | `-- Installing suitesparse-colamd-3.3.4...
[134i386-default-job-13] | | `-- Extracting suitesparse-colamd-3.3.4: .......... done
[134i386-default-job-13] | `-- Extracting suitesparse-cholmod-5.3.0_1: .......... done
[134i386-default-job-13] `-- Extracting suitesparse-umfpack-6.3.5_1: .......... done
[134i386-default-job-13] Extracting py311-numpy-1.26.4_6,1: .......... done
=====
Message from gcc13-13.3.0_2:
--
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using
-Wl,-rpath=/usr/local/lib/gcc13
For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===> py311-phonopy-2.38.0 depends on package: py311-numpy>=1.16,1<1.27,1 - found
===> Returning to build of py311-phonopy-2.38.0
===> py311-phonopy-2.38.0 depends on package: py311-scikit-build-core>0 - not found
===> Installing existing package /packages/All/py311-scikit-build-core-0.11.0.pkg
[134i386-default-job-13] Installing py311-scikit-build-core-0.11.0...
[134i386-default-job-13] `-- Installing py311-packaging-24.2...
[134i386-default-job-13] `-- Extracting py311-packaging-24.2: .......... done
[134i386-default-job-13] `-- Installing py311-pathspec-0.12.1...
[134i386-default-job-13] `-- Extracting py311-pathspec-0.12.1: .......... done
[134i386-default-job-13] Extracting py311-scikit-build-core-0.11.0: .......... done
===> py311-phonopy-2.38.0 depends on package: py311-scikit-build-core>0 - found
===> Returning to build of py311-phonopy-2.38.0
===> py311-phonopy-2.38.0 depends on package: py311-setuptools-scm>=0 - not found
===> Installing existing package /packages/All/py311-setuptools-scm-8.0.4.pkg
[134i386-default-job-13] Installing py311-setuptools-scm-8.0.4...
[134i386-default-job-13] `-- Installing py311-typing-extensions-4.12.2...
[134i386-default-job-13] `-- Extracting py311-typing-extensions-4.12.2: .......... done
[134i386-default-job-13] Extracting py311-setuptools-scm-8.0.4: .......... done
===> py311-phonopy-2.38.0 depends on package: py311-setuptools-scm>=0 - found
===> Returning to build of py311-phonopy-2.38.0
===> py311-phonopy-2.38.0 depends on executable: cython-3.11 - not found
===> Installing existing package /packages/All/py311-cython-0.29.37_2.pkg
[134i386-default-job-13] Installing py311-cython-0.29.37_2...
[134i386-default-job-13] Extracting py311-cython-0.29.37_2: .......... done
===> py311-phonopy-2.38.0 depends on executable: cython-3.11 - found
===> Returning to build of py311-phonopy-2.38.0
===> py311-phonopy-2.38.0 depends on file: /usr/local/bin/python3.11 - found
===> py311-phonopy-2.38.0 depends on package: py311-build>=0 - not found
===> Installing existing package /packages/All/py311-build-1.2.2_2.pkg
[134i386-default-job-13] Installing py311-build-1.2.2_2...
[134i386-default-job-13] `-- Installing py311-pyproject-hooks-1.2.0...
[134i386-default-job-13] `-- Extracting py311-pyproject-hooks-1.2.0: .......... done
[134i386-default-job-13] Extracting py311-build-1.2.2_2: .......... done
===> py311-phonopy-2.38.0 depends on package: py311-build>=0 - found
===> Returning to build of py311-phonopy-2.38.0
===> py311-phonopy-2.38.0 depends on package: py311-installer>=0 - not found
===> Installing existing package /packages/All/py311-installer-0.7.0.pkg
[134i386-default-job-13] Installing py311-installer-0.7.0...
[134i386-default-job-13] Extracting py311-installer-0.7.0: .......... done
===> py311-phonopy-2.38.0 depends on package: py311-installer>=0 - found
===> Returning to build of py311-phonopy-2.38.0
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for py311-phonopy-2.38.0
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for py311-phonopy-2.38.0
* Getting build dependencies for wheel...
WARNING: Use build.verbose instead of cmake.verbose for scikit-build-core >= 0.10
ERROR Missing dependencies:
setuptools-scm
setuptools
*** Error code 1
Stop.
make: stopped in /usr/ports/science/py-phonopy