[package - 141i386-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-29.0.1 in build
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Date: Sat, 08 Mar 2025 05:51:10 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: yuri@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy21/data/141i386-default/9229caa5b2ac/logs/ncbi-cxx-toolkit-29.0.1.log
Build URL: https://pkg-status.freebsd.org/beefy21/build.html?mastername=141i386-default&build=9229caa5b2ac
Log:
=>> Building biology/ncbi-cxx-toolkit
build started at Sat Mar 8 05:37:15 UTC 2025
port directory: /usr/ports/biology/ncbi-cxx-toolkit
package name: ncbi-cxx-toolkit-29.0.1
building for: FreeBSD 141i386-default-job-11 14.1-RELEASE-p8 FreeBSD 14.1-RELEASE-p8 i386
maintained by: yuri@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1840 Mar 8 01:01 /usr/ports/biology/ncbi-cxx-toolkit/Makefile
Ports top last git commit: 9229caa5b
Ports top unclean checkout: no
Port dir last git commit: b8776527e
Port dir unclean checkout: no
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-cxx-toolkit-29.0.1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.0.6.pkg
[141i386-default-job-11] Installing pkg-2.0.6...
[141i386-default-job-11] Extracting pkg-2.0.6: .......... done
===> ncbi-cxx-toolkit-29.0.1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-cxx-toolkit-29.0.1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
=> ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/ncbi/ncbi-cxx-toolkit-public/tar.gz/release/29.0.1?dummy=/ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz
fetch: https://codeload.github.com/ncbi/ncbi-cxx-toolkit-public/tar.gz/release/29.0.1?dummy=/ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/ncbi/ncbi-cxx-toolkit-public/tar.gz/release/29.0.1?dummy=/ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz: size of remote file is not known
ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz 56 MB 6684 kBps 08s
===> Fetching all distfiles required by ncbi-cxx-toolkit-29.0.1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-29.0.1 for building
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-cxx-toolkit-29.0.1 for building
===> Extracting for ncbi-cxx-toolkit-29.0.1
=> SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for ncbi-cxx-toolkit-29.0.1
===> Applying FreeBSD patches for ncbi-cxx-toolkit-29.0.1 from /usr/ports/biology/ncbi-cxx-toolkit/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-cxx-toolkit-29.0.1 depends on package: gmake>=4.4.1 - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[141i386-default-job-11] Installing gmake-4.4.1...
[141i386-default-job-11] `-- Installing gettext-runtime-0.23.1...
[141i386-default-job-11] | `-- Installing indexinfo-0.3.1_1...
[141i386-default-job-11] | `-- Extracting indexinfo-0.3.1_1: .... done
[141i386-default-job-11] `-- Extracting gettext-runtime-0.23.1: .......... done
[141i386-default-job-11] Extracting gmake-4.4.1: .......... done
===> ncbi-cxx-toolkit-29.0.1 depends on package: gmake>=4.4.1 - found
===> Returning to build of ncbi-cxx-toolkit-29.0.1
===> ncbi-cxx-toolkit-29.0.1 depends on file: /usr/local/bin/python3.11 - not found
===> Installing existing package /packages/All/python311-3.11.11.pkg
[141i386-default-job-11] Installing python311-3.11.11...
[141i386-default-job-11] `-- Installing libffi-3.4.6...
[141i386-default-job-11] `-- Extracting libffi-3.4.6: .......... done
<snip>
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/checksum.cpp -o checksum.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/checksum_cityhash.cpp -o checksum_cityhash.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/strbuffer.cpp -o strbuffer.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/itree.cpp -o itree.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/smalldns.cpp -o smalldns.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/thread_pool_old.cpp -o thread_pool_old.o
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/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/util_misc.cpp -o util_misc.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/histogram_binning.cpp -o histogram_binning.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/table_printer.cpp -o table_printer.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/retry_ctx.cpp -o retry_ctx.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/stream_source.cpp -o stream_source.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/file_manifest.cpp -o file_manifest.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/cache_async.cpp -o cache_async.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/multipattern_search.cpp -o multipattern_search.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/crc32_sse.cpp -o crc32_sse.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/incr_time.cpp -o incr_time.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/memory_streambuf.cpp -o memory_streambuf.o
/bin/rm -f libxutil.so .libxutil.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o libxutil.so -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O -fPIC random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o incr_time.o memory_streambuf.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib -lm -pthread
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib
/bin/ln -f libxutil.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib/libxutil.so
/bin/ln -f .xutil.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/status/.xutil.dep
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util'
/usr/local/bin/gmake -C regexp all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/regexp'
NOTE: Skipping project regexp due to unmet requirements:
LocalPCRE
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/regexp'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/regexp TMPL=regexp mark-as-disabled
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/regexp'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/regexp'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/regexp'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/regexp'
/usr/local/bin/gmake -C xregexp all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp TMPL=xregexp export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
gmake[5]: Nothing to be done for 'export-headers'.
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/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp TMPL=xregexp_template_tester export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp TMPL=xregexp flag-stamps
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp TMPL=xregexp_template_tester flag-stamps
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp TMPL=xregexp all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/regexp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/arg_regexp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/mask_regexp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/convert_dates_iso8601.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/regexp.cpp -o regexp.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/arg_regexp.cpp -o arg_regexp.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/mask_regexp.cpp -o mask_regexp.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -I/usr/local/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o
/bin/rm -f libxregexp.so .libxregexp.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o libxregexp.so -Wl,-rpath,/usr/local/lib -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O -fPIC regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib -lxutil -L/usr/local/lib -lpcre
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib
/bin/ln -f libxregexp.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib/libxregexp.so
/bin/ln -f .xregexp.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/status/.xregexp.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp TMPL=xregexp_template_tester all
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/regexp_template_tester.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o
/bin/rm -f libxregexp_template_tester.so .libxregexp_template_tester.so.stamp
/usr/bin/c++ -stdlib=libc++ -std=gnu++20 -shared -o libxregexp_template_tester.so -Wl,-rpath,/usr/local/lib -Wl,-rpath,/usr/local/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fstack-protector-strong -O -fPIC regexp_template_tester.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib -L/usr/local/lib -lpcre
/bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib
/bin/ln -f libxregexp_template_tester.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib/libxregexp_template_tester.so
/bin/ln -f .xregexp_template_tester.dep /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/status/.xregexp_template_tester.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/xregexp'
/usr/local/bin/gmake -C compress all_r || exit 5
gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress'
/usr/local/bin/gmake -C bzip2 all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/bzip2'
NOTE: Skipping project bzip2 due to unmet requirements:
LocalBZ2
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/bzip2'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/bzip2 TMPL=bzip2 mark-as-disabled
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/bzip2'
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/bzip2'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/bzip2'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/bzip2'
/usr/local/bin/gmake -C zlib all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib'
NOTE: Skipping project zlib due to unmet requirements:
LocalZ
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib TMPL=zlib mark-as-disabled
gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib'
gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib'
/usr/local/bin/gmake -C zlib_cloudflare all_r || exit 5
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare TMPL=zlib_cf export-headers
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
gmake[5]: Nothing to be done for 'export-headers'.
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare TMPL=zlib_cf flag-stamps
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
/usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare TMPL=zlib_cf all
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/deflate.c:149:2: error: "Only 64-bit Intel and ARM architectures are supported"
149 | #error "Only 64-bit Intel and ARM architectures are supported"
| ^
1 error generated.
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/deflate.c:149:2: error: "Only 64-bit Intel and ARM architectures are supported"
149 | #error "Only 64-bit Intel and ARM architectures are supported"
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/deflate.c:161:16: warning: call to undeclared function 'hash_func'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
161 | s->ins_h = hash_func(s, &s->window[str]);
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/deflate.c:170:20: warning: call to undeclared function 'hash_func'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
170 | s->ins_h = hash_func(s, &s->window[startpos + idx]);
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/deflate.c:1304:17: warning: unused variable 'i' [-Wunused-variable]
1304 | int i;
| ^
/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/deflate.c:1377:25: warning: call to undeclared function 'hash_func'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
1377 | ins_h = hash_func(s, &s->window[str]);
| ^
4 warnings and 1 error generated.
gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/Makefile.rules:111: deflate.o] Error 1
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/adler32.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/adler32_simd.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/crc32.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/deflate.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/infback.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/inffast.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/inflate.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/inftrees.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/trees.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/zutil.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/ncbi_z_compress.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/uncompr.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/gzclose.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/gzlib.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/gzread.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/gzwrite.c.
/usr/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include/util/compress/zlib_cloudflare -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/adler32.c -o adler32.o
/usr/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include/util/compress/zlib_cloudflare -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/adler32_simd.c -o adler32_simd.o
/usr/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include/util/compress/zlib_cloudflare -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/crc32.c -o crc32.o
/usr/bin/cc -msse4.2 -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/inc -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include -I/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include/util/compress/zlib_cloudflare -DNCBI_BUILD_SESSION_ID=9581cb49-fbdf-11ef-b394-a036bc746cc7 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/util/compress/zlib_cloudflare/deflate.c -o deflate.o
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
FAILED: src/util/compress/zlib_cloudflare/Makefile.zlib_cf.lib
gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
/bin/rm -f libzcf.so libzcf.so .zcf.dep .libzcf.so.stamp
/bin/rm -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/lib/libzcf.so /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/status/.zcf.dep
gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/Makefile.meta_l:336: all.nonusr] Error 2
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress/zlib_cloudflare'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util/compress'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build/util'
gmake[1]: *** [/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1815-ReleaseMTDLL/build'
gmake: *** [Makefile:24: all] Error 2
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-cxx-toolkit