[package - 135amd64-default][biology/ncbi-blast+] Failed for ncbi-blast+-2.16.0_5 in build
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Date: Mon, 21 Jul 2025 09:03:06 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: jwb@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/beefy16/data/135amd64-default/fc1a825d9035/logs/ncbi-blast+-2.16.0_5.log
Build URL: https://pkg-status.freebsd.org/beefy16/build.html?mastername=135amd64-default&build=fc1a825d9035
Log:
=>> Building biology/ncbi-blast+
build started at Mon Jul 21 08:57:54 UTC 2025
port directory: /usr/ports/biology/ncbi-blast+
package name: ncbi-blast+-2.16.0_5
building for: FreeBSD 135amd64-default-job-12 13.5-RELEASE-p2 FreeBSD 13.5-RELEASE-p2 amd64
maintained by: jwb@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 3578 Jun 22 01:02 /usr/ports/biology/ncbi-blast+/Makefile
Ports top last git commit: fc1a825d903
Ports top unclean checkout: no
Port dir last git commit: 69bfe8f1431
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2-12-g74a54a88
Host OSVERSION: 1500035
Jail OSVERSION: 1305000
Job Id: 12
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--MAINTAINER--
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#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
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=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-blast+-2.16.0_5 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-2.2.1.pkg
[135amd64-default-job-12] Installing pkg-2.2.1...
[135amd64-default-job-12] Extracting pkg-2.2.1: .......... done
===> ncbi-blast+-2.16.0_5 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of ncbi-blast+-2.16.0_5
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.16.0_5 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.16.0_5 for building
=> SHA256 Checksum OK for ncbi-blast-2.16.0+-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License PD accepted by the user
===> Fetching all distfiles required by ncbi-blast+-2.16.0_5 for building
===> Extracting for ncbi-blast+-2.16.0_5
=> SHA256 Checksum OK for ncbi-blast-2.16.0+-src.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for ncbi-blast+-2.16.0_5
===> Applying FreeBSD patches for ncbi-blast+-2.16.0_5 from /usr/ports/biology/ncbi-blast+/files
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> ncbi-blast+-2.16.0_5 depends on package: gmake>=4.4.1 - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[135amd64-default-job-12] Installing gmake-4.4.1...
[135amd64-default-job-12] `-- Installing gettext-runtime-0.23.1...
[135amd64-default-job-12] | `-- Installing indexinfo-0.3.1_1...
[135amd64-default-job-12] | `-- Extracting indexinfo-0.3.1_1: .... done
[135amd64-default-job-12] `-- Extracting gettext-runtime-0.23.1: .......... done
[135amd64-default-job-12] Extracting gmake-4.4.1: .......... done
===> ncbi-blast+-2.16.0_5 depends on package: gmake>=4.4.1 - found
===> Returning to build of ncbi-blast+-2.16.0_5
===> ncbi-blast+-2.16.0_5 depends on file: /usr/local/bin/python3.11 - not found
===> Installing existing package /packages/All/python311-3.11.13.pkg
[135amd64-default-job-12] Installing python311-3.11.13...
[135amd64-default-job-12] `-- Installing libffi-3.5.1...
[135amd64-default-job-12] `-- Extracting libffi-3.5.1: .......... done
[135amd64-default-job-12] `-- Installing mpdecimal-4.0.1...
[135amd64-default-job-12] `-- Extracting mpdecimal-4.0.1: .......... done
[135amd64-default-job-12] `-- Installing readline-8.2.13_2...
[135amd64-default-job-12] `-- Extracting readline-8.2.13_2: .......... done
[135amd64-default-job-12] Extracting python311-3.11.13: .......... done
=====
Message from python311-3.11.13:
--
Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:
<snip>
aits;
| ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp:33:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:38:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp:35:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp:39:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:252:
/usr/include/c++/v1/string:2535:5: error: implicit instantiation of undefined template 'std::char_traits<unsigned short>'
2535 | traits_type::In file included from cop/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cppy(:33s:
tIn file included from d/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/blob_storage.hpp:36:::
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp_:37_:
tIn file included from o_a/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38dd:
reIn file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hppss(:__61p:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp):252,:
s/usr/include/c++/v1/stringt:d2535::5:__t: oerror: _implicit instantiation of undefined template 'std::char_traits<unsigned short>'
address(__ 2535 | o l d_pt),ra i_t_sn__tcyopepy::)copy;
( s| ^
td::__to_a/usr/include/c++/v1/stringd:d2556r:3ess:(_ _note: pin instantiation of member function 'std::basic_string<unsigned short>::__grow_by' requested here)
, std::__to_a 2556 | _d_gdrroesws(__by(_old__p_)o,l d___n_ccoap,py __)de;
lt | ^
a_cap, __/usr/include/c++/v1/stringo:l2556d:_3s:z, __note: nin instantiation of member function 'std::basic_string<unsigned short>::__grow_by' requested here
_copy, _ _2556n | _ _d_eglro,w_ by(____onl_ad_dcadp),;
_ _| de ^
lta/usr/include/c++/v1/string:2858_c:ap7,: _note: _in instantiation of member function 'std::basic_string<unsigned short>::__grow_by_without_replace' requested here
ol 2858d_ | sz , __ n __c_ogproy, w___nby__dweilt,h _o_unt__raedpd)l;a
c e| ( ^
__cap, __sz +/usr/include/c++/v1/string:2858 __n :7:- note: _in instantiation of member function 'std::basic_string<unsigned short>::__grow_by_without_replace' requested here_
cap, 2858 | _ _ sz, __sz, 0);
| ^
__gr/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:ow5690_:b24y_: wnote: iin instantiation of member function 'std::basic_string<unsigned short>::append' requested hereth
out_rep l5690a | c e ( _ _ c a p , _ _s z r+e s_u_lnt -. _a_ppceanpd,( __1sz,, (T _C_shzar,)h i0);)
;|
^ | ^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl5690::603:19:24: note: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString<unsigned short>' requested here
in instantiation of member function 'std::basic_string<unsigned short>::append' requested here
603 | 5690 | r e t u r n C U t f 8 :res:x_uAslBast.icapStrpinegn(ds(t1r,, s(uTbCshart)hiit)u;t
| e ^
_on_error, (CUtf8::/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603EVa:li19: danote: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString<unsigned short>' requested here
te)v a603l | i d ratee)t;u
r n| CUt ^f
8::x_AsBasicSt/usr/include/c++/v1/__fwd/string.h:23r:29ing: (snote: trtemplate is declared here,
subst 23it | utset_roun_cte _rLrIoBCr,PP _(TCEUMtPfL8A:TE:_EVaVIlidatSe) vcaharli_dattreait)s;;
| | ^
^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _LIBCPP_TEMPLATE_VIS char_traits;
| ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cpp:33In file included from :
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp:33/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/blob_storage.hpp:
In file included from :/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:3638:
:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hpp:42In file included from :
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp::3735:
:
In file included from In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp::
In file included from 39/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp::
61In file included from :
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hppIn file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp::38:
252In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp:
:252/usr/include/c++/v1/string::
2538/usr/include/c++/v1/string::52538:: 5:error: error: implicit instantiation of undefined template 'std::char_traits<unsigned short>'
implicit instantiation of undefined template 'std::char_traits<unsigned short>'
2538 2538 | | t rtariats_titypse:_:tcopyy(p
e | ^::cop
y(
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here/usr/include/c++/v1/__fwd/string.h
:23:29: note: template is declared here 23 |
struct _L I23 | struct _LIBCPPBC_PPT_ETEMMPLPALTATE_VEIS_ VISc chhaar_rtr_atrits;a
i| t ^
s;
| ^
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp:33:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/error_codes.hpp:38:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbidiag.hppIn file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cpp:33:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/blob_storage.hpp:36:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistd.hpp:37:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:38:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_limits.hpp:61:42:
In file included from :
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbi_stack.hpp::35252:
:
In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistre.hpp/usr/include/c++/v1/string::392965:
:In file included from 22/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbictype.hpp:38: :
error: implicit instantiation of undefined template 'std::char_traits<unsigned short>'In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistl.hpp
:252:
/usr/include/c++/v1/string:2965:22: error: implicit instantiation of undefined template 'std::char_traits<unsigned short>'
2965 | 2965 retur | n r eapptuend(__sr, nt rappaietsnd(___st, ytprea:i:tlensgt_ht(y_p_se)):;:
l| e ^
ngth(__s/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp:5695:)24:) ;note:
in instantiation of member function 'std::basic_string<unsigned short>::append' requested here | ^
5695 | /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/ncbistr.hpp : 5695 :24 : note: in instantiation of member function 'std::basic_string<unsigned short>::append' requested here
5695 | re su l t . arepspuelntd.(aspupbesntdi(tsuutbes_toint_uetrer_oorn_);e
| ^
rror);
| ^
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inl:603:19: note: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include/corelib/impl/stringutf8_deprecated.inlin instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString<unsigned short>' requested here:
603:19: note: in instantiation of function template specialization 'ncbi::CUtf8::x_AsBasicString<unsigned short>' requested here
603 | 603 | re turren tCUutrfn8 :C:Utx_fAsBa8sic::Sx_AstBarsinicgStri(ngstr(,ssturb,sstuibtsuttie_otun_tee_ornr_oerr,r o(rC,U t(fC8U:t:fE8V:a:lEiVdaaltied)avtael)ivdaaltied)a;t
e )| ^
;
| ^
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
/usr/include/c++/v1/__fwd/string.h:23:29: note: template is declared here
23 | struct _L I23B | CsPtPru_cTtE MP_LLATEI_VBICSP Pc_hTaEMrPL_AtTrEa_itsVI;S
c h| ^ar_
traits;
| ^
16 errors generated.
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.rules:103: ncbi_os_unix.o] Error 1
16 errors generated.
gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/Makefile.rules:103: blob_storage.o] Error 1
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib'
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ddumpable.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/env_reg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/metareg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_config.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_param.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_process.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_safe_static.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_signal.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_stack.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_system.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiapp.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiargs.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiatomic.cpp.
Updating dependency information for ncbicfg.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidbg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidiag_p.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbidll.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbienv.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexec.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiexpt.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbifile.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimempool.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbimtx.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbiobj.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbireg.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbistre.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbithr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbitime.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/obj_store.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/plugin_manager_store.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/rwstreambuf.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/stream_utils.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/syslog.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/version.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_ctx.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_control.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/expr.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_strings.c.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/resource_info.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/interprocess_lock.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_autoinit.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/perf_log.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_toolkit.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbierror.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_url.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_cookies.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/guard.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_message.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/request_status.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_fast.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_dbsvcmapper.cpp.
Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_pool_balancer.cpp.
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=7dc783c9-6611-11f0-a946-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=7dc783c9-6611-11f0-a946-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o
/usr/bin/c++ -stdlib=libc++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wno-deprecated-register -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -isystem /usr/local/include -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/include -DNCBI_BUILD_SESSION_ID=7dc783c9-6611-11f0-a946-0cc47ad937e2 /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib'
FAILED: src/corelib/Makefile.corelib.lib
gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib'
gmake[4]: warning: -j3 forced in submake: resetting jobserver mode.
/bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp
/bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxncbi.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xncbi.dep \
/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/lib/libxncbi-static.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/status/.xncbi-static.dep
gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib'
gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_l:336: all.nonusr] Error 2
gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib'
gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_l:288: all_l.real] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build/corelib'
gmake[1]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.16.0+-src/c++/ReleaseMT/build'
gmake: *** [Makefile:24: all] Error 2
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped in /usr/ports/biology/ncbi-blast+