[package - main-armv7-default][biology/seaview] Failed for seaview-5.0.5_2,1 in build
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Date: Wed, 01 Jan 2025 16:39:44 UTC
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.
Maintainer: bofh@FreeBSD.org
Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/pd594ba044905_s6ea1ce222c/logs/seaview-5.0.5_2,1.log
Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=pd594ba044905_s6ea1ce222c
Log:
=>> Building biology/seaview
build started at Wed Jan 1 16:39:14 UTC 2025
port directory: /usr/ports/biology/seaview
package name: seaview-5.0.5_2,1
building for: FreeBSD main-armv7-default-job-04 15.0-CURRENT FreeBSD 15.0-CURRENT 1500029 arm
maintained by: bofh@FreeBSD.org
Makefile datestamp: -rw-r--r-- 1 root wheel 1498 Jan 13 2024 /usr/ports/biology/seaview/Makefile
Ports top last git commit: d594ba04490
Ports top unclean checkout: no
Port dir last git commit: d4329229fbe
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.2
Host OSVERSION: 1500028
Jail OSVERSION: 1500029
Job Id: 04
!!! Jail is newer than host. (Jail: 1500029, Host: 1500028) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!
---Begin Environment---
SHELL=/bin/sh
OSVERSION=1500029
UNAME_v=FreeBSD 15.0-CURRENT 1500029
UNAME_r=15.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
LOCALBASE=/usr/local
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.2
MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/main-armv7-default/04/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=main-armv7-default
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.2
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---
---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
MAKE_ARGS=
---End Poudriere Port Flags/Env---
---Begin OPTIONS List---
---End OPTIONS List---
--MAINTAINER--
bofh@FreeBSD.org
--End MAINTAINER--
--CONFIGURE_ARGS--
--End CONFIGURE_ARGS--
--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seaview/work/.cache HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seaview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seaview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--
--MAKE_ENV--
HELPFILE='-DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\"' PHYMLNAME='-DPHYMLNAME=\"phyml\"' IFLTK='-I/usr/local/include' LFLTK='-L/usr/local/lib' USE_XFT='-DUSE_XFT' OPT="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seaview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seaview/work/.cache HOME=/wrkdirs/usr/ports/biology/seaview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seaview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seaview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-stro
ng " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444"
--End MAKE_ENV--
--PLIST_SUB--
OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seaview" EXAMPLESDIR="share/examples/seaview" DATADIR="share/seaview" WWWDIR="www/seaview" ETCDIR="etc/seaview"
--End PLIST_SUB--
--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seaview DOCSDIR=/usr/local/share/doc/seaview EXAMPLESDIR=/usr/local/share/examples/seaview WWWDIR=/usr/local/www/seaview ETCDIR=/usr/local/etc/seaview
--End SUB_LIST--
---Begin make.conf---
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure. It currently retries the same
# failed mirror and then fails rather then trying another. It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
.include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time (seconds, -t) unlimited
file size (512-blocks, -f) unlimited
data seg size (kbytes, -d) 524288
stack size (kbytes, -s) 65536
core file size (512-blocks, -c) unlimited
max memory size (kbytes, -m) unlimited
locked memory (kbytes, -l) unlimited
max user processes (-u) 89999
open files (-n) 8192
virtual mem size (kbytes, -v) unlimited
swap limit (kbytes, -w) unlimited
socket buffer size (bytes, -b) unlimited
pseudo-terminals (-p) unlimited
kqueues (-k) unlimited
umtx shared locks (-o) unlimited
pipebuf (-y) unlimited
--End resource limits--
=======================<phase: check-sanity >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> seaview-5.0.5_2,1 depends on file: /usr/local/sbin/pkg - not found
===> Installing existing package /packages/All/pkg-1.21.3.pkg
[main-armv7-default-job-04] Installing pkg-1.21.3...
[main-armv7-default-job-04] Extracting pkg-1.21.3: .......... done
===> seaview-5.0.5_2,1 depends on file: /usr/local/sbin/pkg - found
===> Returning to build of seaview-5.0.5_2,1
===========================================================================
=======================<phase: fetch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by seaview-5.0.5_2,1 for building
===========================================================================
=======================<phase: checksum >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by seaview-5.0.5_2,1 for building
=> SHA256 Checksum OK for seaview_5.0.5.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> License GPLv3 accepted by the user
===> Fetching all distfiles required by seaview-5.0.5_2,1 for building
===> Extracting for seaview-5.0.5_2,1
=> SHA256 Checksum OK for seaview_5.0.5.tar.gz.
===========================================================================
=======================<phase: patch-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Patching for seaview-5.0.5_2,1
/usr/bin/sed -i.bak -e 's|^\(CC\) |#\1 | ; s|-ldl || ; s|^\(CXX\) |#\1 |' /wrkdirs/usr/ports/biology/seaview/work/seaview/Makefile
echo 'boolean javarun;' >> /wrkdirs/usr/ports/biology/seaview/work/seaview/csrc/phylip.c
===========================================================================
=======================<phase: build-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> seaview-5.0.5_2,1 depends on package: gmake>=4.4.1 - not found
===> Installing existing package /packages/All/gmake-4.4.1.pkg
[main-armv7-default-job-04] Installing gmake-4.4.1...
[main-armv7-default-job-04] `-- Installing gettext-runtime-0.22.5...
[main-armv7-default-job-04] | `-- Installing indexinfo-0.3.1...
[main-armv7-default-job-04] | `-- Extracting indexinfo-0.3.1: .... done
[main-armv7-default-job-04] `-- Extracting gettext-runtime-0.22.5: .......... done
[main-armv7-default-job-04] Extracting gmake-4.4.1: .......... done
===> seaview-5.0.5_2,1 depends on package: gmake>=4.4.1 - found
===> Returning to build of seaview-5.0.5_2,1
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found
===> Installing existing package /packages/All/libX11-1.8.9,1.pkg
[main-armv7-default-job-04] Installing libX11-1.8.9,1...
[main-armv7-default-job-04] `-- Installing libxcb-1.17.0...
[main-armv7-default-job-04] | `-- Installing libXau-1.0.11...
[main-armv7-default-job-04] | `-- Extracting libXau-1.0.11: .......... done
[main-armv7-default-job-04] | `-- Installing libXdmcp-1.1.5...
[main-armv7-default-job-04] | | `-- Installing xorgproto-2024.1...
[main-armv7-default-job-04] | | `-- Extracting xorgproto-2024.1: .......... done
[main-armv7-default-job-04] | `-- Extracting libXdmcp-1.1.5: ......... done
[main-armv7-default-job-04] `-- Extracting libxcb-1.17.0: .......... done
[main-armv7-default-job-04] Extracting libX11-1.8.9,1: .......... done
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found
===> Returning to build of seaview-5.0.5_2,1
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - not found
===> Installing existing package /packages/All/libXcursor-1.2.2.pkg
[main-armv7-default-job-04] Installing libXcursor-1.2.2...
[main-armv7-default-job-04] `-- Installing libXfixes-6.0.1...
[main-armv7-default-job-04] `-- Extracting libXfixes-6.0.1: .......... done
[main-armv7-default-job-04] `-- Installing libXrender-0.9.11...
[main-armv7-default-job-04] `-- Extracting libXrender-0.9.11: .......... done
[main-armv7-default-job-04] Extracting libXcursor-1.2.2: .......... done
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xcursor.pc - found
===> Returning to build of seaview-5.0.5_2,1
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - not found
===> Installing existing package /packages/All/libXext-1.3.6,1.pkg
[main-armv7-default-job-04] Installing libXext-1.3.6,1...
[main-armv7-default-job-04] Extracting libXext-1.3.6,1: .......... done
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xext.pc - found
===> Returning to build of seaview-5.0.5_2,1
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xfixes.pc - found
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - not found
===> Installing existing package /packages/All/libXft-2.3.8.pkg
[main-armv7-default-job-04] Installing libXft-2.3.8...
[main-armv7-default-job-04] `-- Installing fontconfig-2.15.0_3,1...
[main-armv7-default-job-04] | `-- Installing expat-2.6.4...
[main-armv7-default-job-04] | `-- Extracting expat-2.6.4: .......... done
[main-armv7-default-job-04] | `-- Installing freetype2-2.13.3...
[main-armv7-default-job-04] | | `-- Installing brotli-1.1.0,1...
[main-armv7-default-job-04] | | `-- Extracting brotli-1.1.0,1: .......... done
[main-armv7-default-job-04] | | `-- Installing png-1.6.44...
[main-armv7-default-job-04] | | `-- Extracting png-1.6.44: .......... done
[main-armv7-default-job-04] | `-- Extracting freetype2-2.13.3: .......... done
[main-armv7-default-job-04] `-- Extracting fontconfig-2.15.0_3,1: .......... done
[main-armv7-default-job-04] Extracting libXft-2.3.8: .......... done
==> Running trigger: fontconfig.ucl
Running fc-cache to build fontconfig cache...
=====
Message from freetype2-2.13.3:
--
The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as
the default, emulating a modern version of ClearType. This change inevitably
leads to different rendering results, and you might change port's options to
adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment
variable).
The environment variable "FREETYPE_PROPERTIES" can be used to control the
driver properties. Example:
FREETYPE_PROPERTIES=truetype:interpreter-version=35 \
cff:no-stem-darkening=1 \
autofitter:warping=1
This allows to select, say, the subpixel hinting mode at runtime for a given
application.
If LONG_PCF_NAMES port's option was enabled, the PCF family names may include
the foundry and information whether they contain wide characters. For example,
"Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at
run time with using pcf:no-long-family-names property, if needed. Example:
FREETYPE_PROPERTIES=pcf:no-long-family-names=1
How to recreate fontconfig cache with using such environment variable,
if needed:
# env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv
The controllable properties are listed in the section "Controlling FreeType
Modules" in the reference's table of contents
(/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed).
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xft.pc - found
===> Returning to build of seaview-5.0.5_2,1
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - not found
===> Installing existing package /packages/All/libXinerama-1.1.5,1.pkg
[main-armv7-default-job-04] Installing libXinerama-1.1.5,1...
[main-armv7-default-job-04] Extracting libXinerama-1.1.5,1: .......... done
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xinerama.pc - found
===> Returning to build of seaview-5.0.5_2,1
===> seaview-5.0.5_2,1 depends on file: /usr/local/libdata/pkgconfig/xrender.pc - found
===========================================================================
=======================<phase: lib-depends >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===> seaview-5.0.5_2,1 depends on shared library: libfltk.so - not found
===> Installing existing package /packages/All/fltk-1.3.10.pkg
[main-armv7-default-job-04] Installing fltk-1.3.10...
[main-armv7-default-job-04] `-- Installing jpeg-turbo-3.0.4...
[main-armv7-default-job-04] `-- Extracting jpeg-turbo-3.0.4: .......... done
[main-armv7-default-job-04] `-- Installing libGLU-9.0.3...
[main-armv7-default-job-04] | `-- Installing libglvnd-1.7.0...
[main-armv7-default-job-04] | `-- Extracting libglvnd-1.7.0: .......... done
[main-armv7-default-job-04] `-- Extracting libGLU-9.0.3: ..... done
[main-armv7-default-job-04] Extracting fltk-1.3.10: .......... done
===> seaview-5.0.5_2,1 depends on shared library: libfltk.so - found (/usr/local/lib/libfltk.so)
===> Returning to build of seaview-5.0.5_2,1
===> seaview-5.0.5_2,1 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so)
===> seaview-5.0.5_2,1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so)
===> seaview-5.0.5_2,1 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so)
===========================================================================
=======================<phase: configure >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Configuring for seaview-5.0.5_2,1
===========================================================================
=======================<phase: build >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===> Building for seaview-5.0.5_2,1
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx
use_mase_files.cxx:396:36: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
396 | while(c != '\n' && c != '\r' && c != EOF) c = getc(in);
| ~ ^ ~~~
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx
1 warning generated.
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx
trees.cxx:190:25: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
190 | while((c = fgetc(in)) != EOF) {
| ~~~~~~~~~~~~~~~ ^ ~~~
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx
1 warning generated.
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx
c++ -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -I. -I/usr/local/include -Icsrc -DDEFAULT_HELPFILE=\"/usr/local/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/raa_acnuc.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/parser.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/md5.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/zsockr.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/misc_acnuc.c
csrc/misc_acnuc.c:870:7: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare]
870 | if(c == EOF || c == '\n' || c == '\r') break;
| ~ ^ ~~~
1 warning generated.
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/dnapars.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/protpars.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/seq.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/phylip.c
treerecs_draw.cxx:1010:33: warning: result of comparison of constant -1 with expression of type 'char' is always true [-Wtautological-constant-out-of-range-compare]
1010 | while( ( ch = fgetc(source) ) != EOF )
| ~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~
1 warning generated.
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/lwl.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/bionj.c
cc -c -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Dunix -Icsrc csrc/phyml_util.c
c++ -o seaview -fstack-protector-strong seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -lpthread -lz -Wl,-z,muldefs
ld: error: undefined symbol: Fl_SVG_Image::resize(int, int)
>>> referenced by treerecs_draw.cxx
>>> treerecs_draw.o:(svg_zoom_callback(Fl_Widget*, void*))
>>> referenced by treerecs_draw.cxx
>>> treerecs_draw.o:(svg_scrollbar_x_callback(Fl_Widget*, void*))
>>> referenced by treerecs_draw.cxx
>>> treerecs_draw.o:(svg_scrollbar_y_callback(Fl_Widget*, void*))
>>> referenced 2 more times
ld: error: undefined symbol: Fl_SVG_Image::Fl_SVG_Image(char const*, char const*)
>>> referenced by treerecs_draw.cxx
>>> treerecs_draw.o:(Fl_SVG_Box::Fl_SVG_Box(int, int, int, int, char const*))
c++: error: linker command failed with exit code 1 (use -v to see invocation)
gmake: *** [Makefile:46: seaview] Error 1
===> Compilation failed unexpectedly.
Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to
the maintainer.
*** Error code 1
Stop.
make: stopped making "build" in /usr/ports/biology/seaview